Lag0039502 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039502
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Type 1 membrane protein, putative isoform 1
Location	chr2: 44999255 .. 45000383 (+)
RNA-Seq Expression	Lag0039502
Synteny	Lag0039502

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATTAGGATTTACATGTTTTCCGGTTGAAGATAGAGAAATATTGATGGGGGATGAGACAATTGTTTTTCCTAGAACTGGATTTCCCCCATTCTTTTCGTACTTCAAGCTCTTAGTATATTTATTGGTATTACCTATAACTAACTGCACTTCCCTTTATCTTTTTCTCTTAAACAATCTGTAGGAGAACACATGGTGGATTGAGGTTGTGGGAGTCTAAGGATGACATGAAATGGGGGCATGACAAGTTTGAAGAAATGACTTTGCAAGAAAGGTATTGTGAGAAGGTAATGATTTGTTTTTTTATATGCACTAAATGCATGACTTGAGTCTCTCTCTATCTCTCTCAAACGTGTTCTTTCTTTATACCGAATTAGAGGAAAACTTCCAAGGGCCATCCACGAGGTCGAGGTATTAGTCGGCATGGATCATGGTTTATTTGTGCATTATGCTCAATTGCAGATGGAGGACAGAGAGTTCATTGGTAGTTTTTTGTCTCCTTCACAATATTAGAAGGGCTATACACATTCAAGAGGATTTGTCACAAAATGTGCAAGGTCCATCTGAGTTCATCACTGGCTCTTTCGATAGCATCAAGGTACACTATTTTCCTTGATTTTGATGTTTCTTTGTTTTCGATGACATTGTTCAACTTCATTTATTCTAATCAATATTGACCAACGTGTTAGTAGACATTCAAAGTTCAAAGTGATTCTGAAGGAGATGTTTATCATAGATGGAGACTATTTATTGTTACTTTGTCCAAGATATTCCACTTGCTCCAAAAAGCATATGTTGGTAAGTGGTTGGTGCTTTGGTTTGGGAGTGTATCAATTATTCATGATTAATTAAACTTTAGTCTCTTTCAGCTACCCATCTTTGTCAAGAAGTGACAAATTTTATTTAACATGATATATAACACATTGGCTTTGATGTCATTCTCTCGCTCAATGATGACTTGACAAACATACATTTAAATGTCAATGGCACTCCTTTTGATTTTGGAACAAATGAGTTAGGTTTTTAAGATATTATCTTTTACTTAGATACCTGTAATTTAACTTGCAGGTCAAATTGTTGGAGTTGTTTTCTTTTCTGGATCATCATCACCGAAGGCAGAAAAATGA

mRNA sequence

ATGCTATTAGGATTTACATGTTTTCCGGTTGAAGATAGAGAAATATTGATGGGGGATGAGACAATTGTTTTTCCTAGAACTGGATTTCCCCCATTCTTTTCGAGAACACATGGTGGATTGAGGTTGTGGGAGTCTAAGGATGACATGAAATGGGGGCATGACAAGTTTGAAGAAATGACTTTGCAAGAAAGATGGAGGACAGAGAGTTCATTGGTAGTTTTTTGTCTCCTTCACAATATTAGAAGGGCTATACACATTCAAGAGGATTTGTCACAAAATGTGCAAGGTCCATCTGAGTTCATCACTGGCTCTTTCGATAGCATCAAGACATTCAAAGTTCAAAGTGATTCTGAAGGAGATGTTTATCATAGATGGAGACTATTTATTGTTACTTTGTCCAAGATATTCCACTTGCTCCAAAAAGCATATGTTGGTCAAATTGTTGGAGTTGTTTTCTTTTCTGGATCATCATCACCGAAGGCAGAAAAATGA

Coding sequence (CDS)

ATGCTATTAGGATTTACATGTTTTCCGGTTGAAGATAGAGAAATATTGATGGGGGATGAGACAATTGTTTTTCCTAGAACTGGATTTCCCCCATTCTTTTCGAGAACACATGGTGGATTGAGGTTGTGGGAGTCTAAGGATGACATGAAATGGGGGCATGACAAGTTTGAAGAAATGACTTTGCAAGAAAGATGGAGGACAGAGAGTTCATTGGTAGTTTTTTGTCTCCTTCACAATATTAGAAGGGCTATACACATTCAAGAGGATTTGTCACAAAATGTGCAAGGTCCATCTGAGTTCATCACTGGCTCTTTCGATAGCATCAAGACATTCAAAGTTCAAAGTGATTCTGAAGGAGATGTTTATCATAGATGGAGACTATTTATTGTTACTTTGTCCAAGATATTCCACTTGCTCCAAAAAGCATATGTTGGTCAAATTGTTGGAGTTGTTTTCTTTTCTGGATCATCATCACCGAAGGCAGAAAAATGA

Protein sequence

MLLGFTCFPVEDREILMGDETIVFPRTGFPPFFSRTHGGLRLWESKDDMKWGHDKFEEMTLQERWRTESSLVVFCLLHNIRRAIHIQEDLSQNVQGPSEFITGSFDSIKTFKVQSDSEGDVYHRWRLFIVTLSKIFHLLQKAYVGQIVGVVFFSGSSSPKAEK

Homology

[Close]

BLAST of Lag0039502 vs. NCBI nr
Match: XP_022974872.1 (uncharacterized protein LOC111473645 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 7.6e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 73  VFCLLHNIRRAIHIQEDLSQNVQGPSEFITGSFDSIKTFKVQSDSEGDVYHRWRLFIVTL 132
           + CL+HNIRRAIHI EDLSQNVQ PSE ITGSF+SIK FK QSDSEGD   R RLF VTL
Sbjct: 208 LLCLVHNIRRAIHIHEDLSQNVQSPSELITGSFNSIKAFKDQSDSEGDADRRSRLFTVTL 267

Query: 133 SKIFHLLQKAYVGQIVGVVFFSGSSSPKAEK 164
           SKIFHLLQKAY G+IVGV+FFSGSSSPKAEK
Sbjct: 268 SKIFHLLQKAYDGEIVGVIFFSGSSSPKAEK 298

[Close]

BLAST of Lag0039502 vs. NCBI nr
Match: XP_023540910.1 (uncharacterized protein LOC111801150 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 75  CLLHNIRRAIHIQEDLSQNVQGPSEFITGSFDSIKTFKVQSDSEGDVYHRWRLFIVTLSK 134
           CL+HNI+RAIHI EDLSQNVQ PSE ITGSF+SIK FK QSDSEGD   R RLF VTLSK
Sbjct: 210 CLVHNIKRAIHIHEDLSQNVQSPSELITGSFNSIKAFKDQSDSEGDADRRSRLFTVTLSK 269

Query: 135 IFHLLQKAYVGQIVGVVFFSGSSSPKAEK 164
           IFHLLQKAY GQIVGV+FFSGSSSPKAEK
Sbjct: 270 IFHLLQKAYDGQIVGVIFFSGSSSPKAEK 298

[Close]

BLAST of Lag0039502 vs. NCBI nr
Match: XP_022924693.1 (uncharacterized protein LOC111432114 [Cucurbita moschata])

HSP 1 Score: 144.8 bits (364), Expect = 6.4e-31
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 73  VFCLLHNIRRAIHIQEDLSQNVQGPSEFITGSFDSIKTFKVQSDSEGDVYHRWRLFIVTL 132
           + CL+HNI+RAIHI EDLSQNVQ PSE ITGSFDSIK F+ QSDSEGD  HR RLFIV L
Sbjct: 208 LLCLIHNIKRAIHIHEDLSQNVQSPSELITGSFDSIKAFQDQSDSEGDAGHRSRLFIVAL 267

Query: 133 SKIFHLLQKAYVGQIVGVVFFSGSSSPKAEK 164
           SKIF LLQKAY GQIVGVV FSGSSSP AEK
Sbjct: 268 SKIFQLLQKAYDGQIVGVVLFSGSSSPNAEK 298

[Close]

BLAST of Lag0039502 vs. NCBI nr
Match: XP_023526693.1 (uncharacterized protein LOC111790109 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-30
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 73  VFCLLHNIRRAIHIQEDLSQNVQGPSEFITGSFDSIKTFKVQSDSEGDVYHRWRLFIVTL 132
           + CL+HN++RAIHI EDLSQNVQ PSE ITGSFDSIK F+ QSDSEGD  HR RLFIV L
Sbjct: 208 LLCLIHNVKRAIHIHEDLSQNVQSPSELITGSFDSIKAFQDQSDSEGDASHRSRLFIVAL 267

Query: 133 SKIFHLLQKAYVGQIVGVVFFSGSSSPKAEK 164
           SKIF LLQKAY GQIVGVV FSGSSSP AE+
Sbjct: 268 SKIFQLLQKAYDGQIVGVVLFSGSSSPNAEQ 298

[Close]

BLAST of Lag0039502 vs. NCBI nr
Match: KAG7018854.1 (hypothetical protein SDJN02_20727 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-30
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 73  VFCLLHNIRRAIHIQEDLSQNVQGPSEFITGSFDSIKTFKVQSDSEGDVYHRWRLFIVTL 132
           + CL+HN++RAIHI EDLSQNVQ PS+ ITGSFDSIK F+ QSDSEGD  HR RLFIV L
Sbjct: 208 LLCLIHNVKRAIHIHEDLSQNVQSPSDLITGSFDSIKAFQDQSDSEGDAGHRSRLFIVAL 267

Query: 133 SKIFHLLQKAYVGQIVGVVFFSGSSSPKAEK 164
           SKIF LLQKAY GQIVGVV FSGSSSP AEK
Sbjct: 268 SKIFQLLQKAYDGQIVGVVLFSGSSSPNAEK 298

[Close]

BLAST of Lag0039502 vs. ExPASy Swiss-Prot
Match: Q93ZJ9 (Protein MLN51 homolog OS=Arabidopsis thaliana OX=3702 GN=MLN51 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 35  RTHGGLRLWESKDDMKWGHDKFEEMTLQER 65
           R  GG RLW+S+D+ KWGHDKFEEM  Q++
Sbjct: 157 RMRGGRRLWQSRDERKWGHDKFEEMNTQKQ 186

The following BLAST results are available for this feature:

BLAST of Lag0039502 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974872.1	7.6e-32	81.32	uncharacterized protein LOC111473645 [Cucurbita maxima]	[more]
XP_023540910.1	1.3e-31	83.15	uncharacterized protein LOC111801150 [Cucurbita pepo subsp. pepo]	[more]
XP_022924693.1	6.4e-31	80.22	uncharacterized protein LOC111432114 [Cucurbita moschata]	[more]
XP_023526693.1	1.9e-30	78.02	uncharacterized protein LOC111790109 [Cucurbita pepo subsp. pepo]	[more]
KAG7018854.1	1.9e-30	78.02	hypothetical protein SDJN02_20727 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0039502 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ9	3.7e-05	63.33	Protein MLN51 homolog OS=Arabidopsis thaliana OX=3702 GN=MLN51 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37735:SF1	OS08G0567000 PROTEIN	coord: 66..162
None	No IPR available	PANTHER	PTHR37735	OS08G0567000 PROTEIN	coord: 66..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039502.1	Lag0039502.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity