Lag0039487 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039487
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr2: 44747682 .. 44748101 (-)
RNA-Seq Expression	Lag0039487
Synteny	Lag0039487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTTTGAGGTTTCTCTCAAAGATCTTCATTCTCCGATGTTTCTTCTGTCAAATATTTGCAATTTGATCTCGATACGGCTGGATTCTTCAAACTATGTCTTGTGGAAGTTTCAATTCACTTCTATGTTGCGTGCACATAAACTTTTTGGTTTTGTTGATGGATCGCATCCTGCTCCTCCAAAAACTCTTCCGGTTTTTTCTACTGAGAGTTCTTCAACCGATTCTGCTACATCTACTGTTAATCCATCGTATGGAGACTGGTTGGCCAAAGATCAAGCGCTTATGACCTTAATTAATCAATGCTACACTGTCTCCAGAAGCCTTGGCATATATCGTTGGCTGCAATTCTTCTCAAGAGGAATGGGAAGCCCTAGAGAAACATTACTCTTCTTCTTCGAGGACAAATATTGTTAA

mRNA sequence

ATGGCTTCTTTTGAGGTTTCTCTCAAAGATCTTCATTCTCCGATGTTTCTTCTGTCAAATATTTGCAATTTGATCTCGATACGGCTGGATTCTTCAAACTATGTCTTGTGGAAGTTTCAATTCACTTCTATGTTGCGTGCACATAAACTTTTTGGTTTTGTTGATGGATCGCATCCTGCTCCTCCAAAAACTCTTCCGGTTTTTTCTACTGAGAGTTCTTCAACCGATTCTGCTACATCTACTGTTAATCCATCGTATGGAGACTGGTTGGCCAAAGATCAAGCGCTTATGACCTTAATTAATCAATGCTACACTGTCTCCAGAAGCCTTGGCATATATCGTTGGCTGCAATTCTTCTCAAGAGGAATGGGAAGCCCTAGAGAAACATTACTCTTCTTCTTCGAGGACAAATATTGTTAA

Coding sequence (CDS)

ATGGCTTCTTTTGAGGTTTCTCTCAAAGATCTTCATTCTCCGATGTTTCTTCTGTCAAATATTTGCAATTTGATCTCGATACGGCTGGATTCTTCAAACTATGTCTTGTGGAAGTTTCAATTCACTTCTATGTTGCGTGCACATAAACTTTTTGGTTTTGTTGATGGATCGCATCCTGCTCCTCCAAAAACTCTTCCGGTTTTTTCTACTGAGAGTTCTTCAACCGATTCTGCTACATCTACTGTTAATCCATCGTATGGAGACTGGTTGGCCAAAGATCAAGCGCTTATGACCTTAATTAATCAATGCTACACTGTCTCCAGAAGCCTTGGCATATATCGTTGGCTGCAATTCTTCTCAAGAGGAATGGGAAGCCCTAGAGAAACATTACTCTTCTTCTTCGAGGACAAATATTGTTAA

Protein sequence

MASFEVSLKDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLINQCYTVSRSLGIYRWLQFFSRGMGSPRETLLFFFEDKYC

Homology

[Close]

BLAST of Lag0039487 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-25
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 9   KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF 68
           KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T    
Sbjct: 14  KDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRT---- 73

Query: 69  STESSSTDSATSTVNPSYGDWLAKDQALMTLIN 102
              SSST +     NPSY DW+AKDQALMT+IN
Sbjct: 74  -NNSSSTSTVPPQSNPSYEDWIAKDQALMTVIN 101

[Close]

BLAST of Lag0039487 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-25
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 9   KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF 68
           KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T    
Sbjct: 14  KDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRT---- 73

Query: 69  STESSSTDSATSTVNPSYGDWLAKDQALMTLIN 102
              SSST +     NPSY DW+AKDQALMT+IN
Sbjct: 74  -NNSSSTSTVPPQSNPSYEDWIAKDQALMTVIN 101

[Close]

BLAST of Lag0039487 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-25
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 9   KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF 68
           KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T    
Sbjct: 14  KDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRT---- 73

Query: 69  STESSSTDSATSTVNPSYGDWLAKDQALMTLIN 102
              SSST +     NPSY DW+AKDQALMT+IN
Sbjct: 74  -NNSSSTSTVPPQSNPSYEDWIAKDQALMTVIN 101

[Close]

BLAST of Lag0039487 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-25
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 9   KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF 68
           KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T    
Sbjct: 14  KDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRT---- 73

Query: 69  STESSSTDSATSTVNPSYGDWLAKDQALMTLIN 102
              SSST +     NPSY DW+AKDQALMT+IN
Sbjct: 74  -NNSSSTSTVPPQSNPSYEDWIAKDQALMTVIN 101

[Close]

BLAST of Lag0039487 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-24
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 9   KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF 68
           KDLHSP+FLLSNICNL+SIRLDS++++LWKFQ T++L+AHKLFGF+DGS  AP + L   
Sbjct: 31  KDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASS 90

Query: 69  STESSSTDSATS--TVNPSYGDWLAKDQALMTLIN 102
           S   S   + TS   +NP + DW+AKDQALMTLIN
Sbjct: 91  SETESQPTTTTSLPVINPHFEDWIAKDQALMTLIN 125

[Close]

BLAST of Lag0039487 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 28  RLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYG 87
           +L S+NY++W  Q  ++   ++L GF+DGS P PP T+         TD A   VNP Y 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATI--------GTD-AVPRVNPDYT 84

Query: 88  DWLAKDQALMTLI 101
            W  +D+ + + I
Sbjct: 85  RWRRQDKLIYSAI 88

The following BLAST results are available for this feature:

BLAST of Lag0039487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448007.1	5.9e-25	64.52	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	5.9e-25	64.52	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	5.9e-25	64.52	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	5.9e-25	64.52	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
XP_022150845.1	2.2e-24	63.16	uncharacterized protein LOC111018892 [Momordica charantia]	[more]

BLAST of Lag0039487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.4e-05	35.62	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 23..62 e-value: 2.8E-11 score: 43.0
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 18..105
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 18..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039487.1	Lag0039487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding