Lag0039479 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039479
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr2: 44643956 .. 44647227 (-)
RNA-Seq Expression	Lag0039479
Synteny	Lag0039479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAATTTTGCTTAGGGAATTGCTCTTCGCTCCACGCAACGATCAGCAGTGAATTTGTAAGGATGCGGGAAGAGCGTGACCTGCAAGATAAACAAACGCTGCACACCGGTGTGGTGTAGACCACGCGTGCTCCGATGCTTAAGTTAGCTACTGGCCGAAGAACAAGTAGAGTGTATTTAGGGTTAAGTTTTTGCATACCTGTGCGTGTTGGTGGTTCCTCCTTTTGTAAGTCCCCTTAGGGTTTCGGCTGCTCGCCACCGGAGCGTTCGTGGGCCTTTGGCCCTGGTCGGCCTCGGCATTGGGCCGAGGCCGACCACATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCGTCACATCTGGAGGGCCGGGTTGGGCTCCGGCCCTTCGGTCTTCTTCACCTTGGCCTCTTCTAGCTTCTGGGCCGATTCACCGGGGCCCATCCTGCACAAAATATCACAGAACGATTTCTGCCCATAACACAAGTTACTCTAAAACATGGTAATAATCATAATTTTCACTCAAGAAAACACACCAATTGTTCATATTTTTTCAAAATTTATAAAACGAAAGCTAATAGAGACTAAATTTGTTTTGAAAAAGTTAACCACATAGACTAATTTTAAGTTTAGGGACCATAGACACAAATCTGAAAGTTCAGAGACTAAACTTGTAATTTAACCTAATCGATATTAGGTATTTAAAAATTGTATCAATGCTTCTAAAGTTGCATTTATATGAACTTATGCCCCTGATATAAAATCCTGGATCCGTCACTGCATTGATGCATGCTTGTTATCATCATTCTCATTCTCTTTCATTTTTTAGAGAATGAGAATGATGATAACAAGCACGCAAATATTTGCGTGCATTAGGGTTCGAACCCTAATGCACGCAAATATTTTTTTTTTCAGTTTTTTTTTTTAGTTTTTCATTTTTCTTTTCTTTGTTTATTTATAATAGTTCAGTTTTTCCCTTATCTTTTCTTTGTTTATTCATAATAGTTCTATGTAATTTCAATAAATCTTTAGATTAGTCATTATTAATTTGAAGTTACTCTAAAACATGGTAATAATCATAATTTTCACTCAAGAAAACACACCAATTGTTCATATTTTTTCAAAATTTATAAAGCAAAAGCTAATAGAGACTAAATTTGTTTTGAAAAAGTTAATCATAGACTAATTTTATGTTTAGGGACCATAGACACAAATCTGAAAGTTCAGAGACTAAACTTGTAATTTAACCTAATCGATATTAGGTATTTAAATATTGTATCAATGCTTCTAAAGTTGCATTTATATGAACTTGTGCCTCCTGATATAAAATCTTGGATCCGCCACTGCATTGATGCATGCTTGTTATCATCATTCTCATTCTCTTTCATTTTTTCCTTCCATGCTTGTCGTCACTGTCTTTAGATCTAAAATGAAACATACCAAAATTGGTACGTTTTCATTTAAAACCTCCTTTGTTCCAAATACACGAAACTAAAATATGAAACAAAGAAGACCCAAAATGTGGTGATCAGATTTTTTTTTTTTTTTTTCTTGAGACATGTGGTGATCATGAAATTGAACCATTATTTATTTGTCCAATTAGTGTAATTTATCCAATATTTTTACCGTTGGTGGCCAGAAAAAATTAGATTTACAATTTATTCCCAGGGTTCTATATTGGATTTCTTTTAACCCATTTGCTCTTATTTTATTAAAAATTTTAAAATTCAGAACATGATAGAAACTTGCCTCTCTGCGATATGACGGTGCTTGAATATTTCGCGGAAAATTGGCAACATTTTTCAAAATGTCACAATACAAGATATTGAATTTTATTTAAAAAGAGACATAAAGTCCTTCAACTGTTTCCAATACATTATTGGAACAGTAATAAACAACCTTTATATAACAATACTTTTTTTTAAAAAAAAAAAATTAACATATTAAACTTTTCTTCTAACATTACTCCGCAATTAAAATTGTTATAGGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCGAAAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGACCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGAATAGCCCCGGTTTTGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAACAGGTATAAAACCCCCTCTTCACCACGGAAGAAGGGTTCCGAAACTCGATTCTTGACTCTCCCCTTTACTATCTGTAGCTTCTCCTCGGTTTTCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGTGAGTCCTCTGTCCGGATTTTGGCATCAACAGTTGTCGCCGTCTGTGGGGAAGAGTGCTTGCCAATTCAGACCGTGCATCGGTGGTGTTCTGTAGGATGAATCGAGTTCAGAAACTAGAAGGAAACCTCGGGTATGAGCAGAAAACGGCGAACCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGGAGGCTGTTGCGAGGTTCCGCATGTCAGAGATGCTGCTGGACTTGACCCAAGGGGACAGCCCGCGGAGGAACTGGAATCTGTACCACTAACGTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTGAGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGGATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAATGTGGATAGGGATTTCAAGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTTGTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTAGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACCAGAGGAGGTCGAGGCCGACCAGGAACAATGGCTTTCTTTATGTTTACTTTACATAG

mRNA sequence

ATGGTTGAATTTTGCTTAGGGAATTGCTCTTCGCTCCACGCAACGATCAGCAGTGAATTTGGTTTCGGCTGCTCGCCACCGGAGCGTTCGTGGGCCTTTGGCCCTGGTCGGCCTCGGCATTGGGCCGAGGCCGACCACATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCGTCACATCTGGAGGGCCGGGTTGGGCTCCGGCCCTTCGGTCTTCTTCACCTTGGCCTCTTCTAGCTTCTGGGCCGATTCACCGGGGCCCATCCTGCACAAAATATCACAGAACGATTTCTGCCCATAACACAAGTTACTCTAAAACATGGGACCATAGACACAAATCTGAAAGTTCAGAGACTAAACTTGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCGAAAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGACCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGAATAGCCCCGGTTTTGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACTTGTCGCCGTCTGTGGGGAAGAGTGCTTGCCAATTCAGACCGTGCATCGGTGGTGTTCTGTAGGATGAATCGAGTTCAGAAACTAGAAGGAAACCTCGGGTATGAGCAGAAAACGGCGAACCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGGAGGCTGTTGCGAGGTTCCGCATGTCAGAGATGCTGCTGGACTTGACCCAAGGGGACAGCCCGCGGAGGAACTGGAATCTGTACCACTAACGTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTGAGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGGATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAATGTGGATAGGGATTTCAAGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTTGTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTAGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACCAGAGGAGGTCGAGGCCGACCAGGAACAATGGCTTTCTTTATGTTTACTTTACATAG

Coding sequence (CDS)

ATGGTTGAATTTTGCTTAGGGAATTGCTCTTCGCTCCACGCAACGATCAGCAGTGAATTTGGTTTCGGCTGCTCGCCACCGGAGCGTTCGTGGGCCTTTGGCCCTGGTCGGCCTCGGCATTGGGCCGAGGCCGACCACATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCGTCACATCTGGAGGGCCGGGTTGGGCTCCGGCCCTTCGGTCTTCTTCACCTTGGCCTCTTCTAGCTTCTGGGCCGATTCACCGGGGCCCATCCTGCACAAAATATCACAGAACGATTTCTGCCCATAACACAAGTTACTCTAAAACATGGGACCATAGACACAAATCTGAAAGTTCAGAGACTAAACTTGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCGAAAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGACCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGAATAGCCCCGGTTTTGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACTTGTCGCCGTCTGTGGGGAAGAGTGCTTGCCAATTCAGACCGTGCATCGGTGGTGTTCTGTAGGATGAATCGAGTTCAGAAACTAGAAGGAAACCTCGGGTATGAGCAGAAAACGGCGAACCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGGAGGCTGTTGCGAGGTTCCGCATGTCAGAGATGCTGCTGGACTTGACCCAAGGGGACAGCCCGCGGAGGAACTGGAATCTGTACCACTAACGTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTGAGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGGATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAATGTGGATAGGGATTTCAAGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTTGTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTAGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACCAGAGGAGGTCGAGGCCGACCAGGAACAATGGCTTTCTTTATGTTTACTTTACATAG

Protein sequence

MVEFCLGNCSSLHATISSEFGFGCSPPERSWAFGPGRPRHWAEADHMLGLSLRMRPSVTSGGPGWAPALRSSSPWPLLASGPIHRGPSCTKYHRTISAHNTSYSKTWDHRHKSESSETKLVILDHTDGQGADEDNRAEVGPKDRPRGRPDQRVGPMVGLGLLPRPSIWSASAKGRGRPFGPFARTEPDDLFSVPDAPNSPGFAWFAPKHHRIPKNPRRTNRHRRRCGLHHAGVQRFFAGLAGHVFPSFYKFTVGVTCRRLWGRVLANSDRASVVFCRMNRVQKLEGNLGYEQKTANQTEVGLGMEKADPNPEGCCEQKAPNQIEVGLGMEKADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDQRRSRPTRNNGFLYVYFT

Homology

[Close]

BLAST of Lag0039479 vs. NCBI nr
Match: XP_022156048.1 (uncharacterized protein LOC111023016 [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-50
Identity = 106/151 (70.20%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 331 KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGF 390
           +A P+PG      H  ++  LD RG  AEE+ESVPLT EE+RVNIGTKLG E+R  L+ F
Sbjct: 48  EARPSPG------HRLNSTTLD-RGGSAEEVESVPLTVEEQRVNIGTKLGNEERESLINF 107

Query: 391 LRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLK 450
           LR+NAD+FAWS EDMP ID GVMVH+LNVD   KPVKQ+RRAFN ERNE+VA  V+ELLK
Sbjct: 108 LRSNADVFAWSPEDMPRIDRGVMVHRLNVDESCKPVKQKRRAFNQERNEIVAEHVNELLK 167

Query: 451 AGFIREVHYPQWLSNVVLVKKANGKWRMCID 482
            GFIREVHYPQW+SNVVLVKK NGKWRMCID
Sbjct: 168 TGFIREVHYPQWISNVVLVKKPNGKWRMCID 191

[Close]

BLAST of Lag0039479 vs. NCBI nr
Match: XP_022158042.1 (uncharacterized protein LOC111024621 [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-49
Identity = 109/211 (51.66%), Postives = 136/211 (64.45%), Query Frame = 0


Query: 304 MEKADPNPEG--CCEQKAPNQIEVGLG----MEKADPNP--------------------- 363
           M++ D NPEG  C E+++      GLG         PNP                     
Sbjct: 1   MKRVDTNPEGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESIPLTPGD 60

Query: 364 ------GGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGF 423
                 G  C  P    +  +  RG+P +E+ES+PLTS++RRVNIGT+LG ++R  L+ F
Sbjct: 61  RAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTSDDRRVNIGTRLGNKKRASLISF 120

Query: 424 LRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLK 482
           LR+N D+FAWSHEDMPGI+ G+MVHQLNV+   KPVKQ+ RAFN ERNE++A QV+ELLK
Sbjct: 121 LRSNTDVFAWSHEDMPGINRGIMVHQLNVNEGCKPVKQKHRAFNPERNEILAEQVEELLK 180

[Close]

BLAST of Lag0039479 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 7.7e-43
Identity = 106/204 (51.96%), Postives = 123/204 (60.29%), Query Frame = 0


Query: 332 ADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFL 391
           A P+PG      H  ++  LD RG+PAEE+ESVPLT+E+RRVNIGTKLG+E+R  L+ FL
Sbjct: 89  ARPSPG------HRLNSTTLD-RGEPAEEVESVPLTAEDRRVNIGTKLGSEERESLINFL 148

Query: 392 RANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKA 451
           R+NAD+F WS EDMPGID GVMVH+LNVD   KPVKQ+RRAFN ERNE+VA QVDELL+ 
Sbjct: 149 RSNADVFTWSPEDMPGIDRGVMVHRLNVDESCKPVKQKRRAFNQERNEIVAEQVDELLET 208

Query: 452 GFIRE-----------------------------------VHYP---------------- 482
           GFIRE                                   V  P                
Sbjct: 209 GFIREPTNLDEGAPLLAFAFSSVTLNEIGRARKRQWLLALVQKPNMGVTFSGPTILICDN 268

[Close]

BLAST of Lag0039479 vs. NCBI nr
Match: XP_024035690.1 (uncharacterized protein LOC112096473 [Citrus clementina])

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-36
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 352 DPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGID 411
           + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI 
Sbjct: 865 EKRGTPAEDLVSVMICNKDPTKMVKVGSNLPDQHREQLIGFLRKNLDVFAWSHADMPGIP 924

Query: 412 PGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLV 471
           P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL AGFIRE  YP+W+SNVVLV
Sbjct: 925 PSIACHKLNVDPHHRPVKQKRRAFNQERYDAIEQEVDRLLAAGFIREAVYPEWVSNVVLV 984

Query: 472 KKANGKWRMCID 482
           KK+NGKWRMC+D
Sbjct: 985 KKSNGKWRMCVD 996

[Close]

BLAST of Lag0039479 vs. NCBI nr
Match: XP_024045974.1 (uncharacterized protein LOC112100756 [Citrus clementina] >XP_024046421.1 uncharacterized protein LOC112100815 [Citrus clementina])

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-36
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 352  DPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGID 411
            + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI 
Sbjct: 884  EKRGTPAEDLVSVMICNKDPTKMVKVGSNLPDQHREQLIGFLRKNLDVFAWSHADMPGIP 943

Query: 412  PGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLV 471
            P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL AGFIRE  YP W+SNVVLV
Sbjct: 944  PSIACHKLNVDPHHRPVKQKRRAFNQERYDAIEQEVDRLLAAGFIREAVYPDWVSNVVLV 1003

Query: 472  KKANGKWRMCID 482
            KK+NGKWRMC+D
Sbjct: 1004 KKSNGKWRMCVD 1015

[Close]

BLAST of Lag0039479 vs. ExPASy TrEMBL
Match: A0A6J1DPJ5 (uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023016 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-51
Identity = 106/151 (70.20%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 331 KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGF 390
           +A P+PG      H  ++  LD RG  AEE+ESVPLT EE+RVNIGTKLG E+R  L+ F
Sbjct: 48  EARPSPG------HRLNSTTLD-RGGSAEEVESVPLTVEEQRVNIGTKLGNEERESLINF 107

Query: 391 LRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLK 450
           LR+NAD+FAWS EDMP ID GVMVH+LNVD   KPVKQ+RRAFN ERNE+VA  V+ELLK
Sbjct: 108 LRSNADVFAWSPEDMPRIDRGVMVHRLNVDESCKPVKQKRRAFNQERNEIVAEHVNELLK 167

Query: 451 AGFIREVHYPQWLSNVVLVKKANGKWRMCID 482
            GFIREVHYPQW+SNVVLVKK NGKWRMCID
Sbjct: 168 TGFIREVHYPQWISNVVLVKKPNGKWRMCID 191

[Close]

BLAST of Lag0039479 vs. ExPASy TrEMBL
Match: A0A6J1DW49 (uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024621 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.2e-50
Identity = 109/211 (51.66%), Postives = 136/211 (64.45%), Query Frame = 0


Query: 304 MEKADPNPEG--CCEQKAPNQIEVGLG----MEKADPNP--------------------- 363
           M++ D NPEG  C E+++      GLG         PNP                     
Sbjct: 1   MKRVDTNPEGQQCFEEESLEVAANGLGEICPSPDHQPNPTTFDKGEPVGGVESIPLTPGD 60

Query: 364 ------GGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGF 423
                 G  C  P    +  +  RG+P +E+ES+PLTS++RRVNIGT+LG ++R  L+ F
Sbjct: 61  RAVDGLGEICSSPDQLPSPTIFDRGEPTKEVESIPLTSDDRRVNIGTRLGNKKRASLISF 120

Query: 424 LRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLK 482
           LR+N D+FAWSHEDMPGI+ G+MVHQLNV+   KPVKQ+ RAFN ERNE++A QV+ELLK
Sbjct: 121 LRSNTDVFAWSHEDMPGINRGIMVHQLNVNEGCKPVKQKHRAFNPERNEILAEQVEELLK 180

[Close]

BLAST of Lag0039479 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-43
Identity = 106/204 (51.96%), Postives = 123/204 (60.29%), Query Frame = 0


Query: 332 ADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFL 391
           A P+PG      H  ++  LD RG+PAEE+ESVPLT+E+RRVNIGTKLG+E+R  L+ FL
Sbjct: 89  ARPSPG------HRLNSTTLD-RGEPAEEVESVPLTAEDRRVNIGTKLGSEERESLINFL 148

Query: 392 RANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKA 451
           R+NAD+F WS EDMPGID GVMVH+LNVD   KPVKQ+RRAFN ERNE+VA QVDELL+ 
Sbjct: 149 RSNADVFTWSPEDMPGIDRGVMVHRLNVDESCKPVKQKRRAFNQERNEIVAEQVDELLET 208

Query: 452 GFIRE-----------------------------------VHYP---------------- 482
           GFIRE                                   V  P                
Sbjct: 209 GFIREPTNLDEGAPLLAFAFSSVTLNEIGRARKRQWLLALVQKPNMGVTFSGPTILICDN 268

[Close]

BLAST of Lag0039479 vs. ExPASy TrEMBL
Match: A0A2N9ECS2 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4658 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-39
Identity = 82/128 (64.06%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 356 QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVM 415
           +P E+LE + LT  +E+RR  IGT + AE RG +V FLR NAD+FAWSHEDMPGI   VM
Sbjct: 632 EPTEKLEEITLTEGNEKRRTRIGTTMPAEIRGSIVQFLRENADVFAWSHEDMPGISTEVM 691

Query: 416 VHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKAN 475
           VH+LNV+    PVKQ+RR F  ERNE V ++VD+LL AGFIREV+YP+WL+NVV+VKK N
Sbjct: 692 VHKLNVNPSVHPVKQKRRVFAPERNEAVMTEVDKLLTAGFIREVYYPEWLANVVMVKKPN 751

Query: 476 GKWRMCID 482
           GKWRMC+D
Sbjct: 752 GKWRMCVD 759

[Close]

BLAST of Lag0039479 vs. ExPASy TrEMBL
Match: A0A2N9FDC4 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16759 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-39
Identity = 81/128 (63.28%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 356 QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVM 415
           +P E+LE + LT  +E+RR  IGT + AE RG +V FLR NAD+FAWSHEDMPGI   VM
Sbjct: 655 EPTEKLEEITLTEGNEKRRTRIGTTMPAEIRGSIVQFLRENADVFAWSHEDMPGISTEVM 714

Query: 416 VHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKAN 475
           VH+LNV+    PVKQ+RR F  ERNE + ++VD+LL AGFIREV+YP+WL+NVV+VKK N
Sbjct: 715 VHKLNVNPSVHPVKQKRRVFAPERNEAIMTEVDKLLTAGFIREVYYPEWLANVVMVKKPN 774

Query: 476 GKWRMCID 482
           GKWRMC+D
Sbjct: 775 GKWRMCVD 782

The following BLAST results are available for this feature:

BLAST of Lag0039479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156048.1	1.7e-50	70.20	uncharacterized protein LOC111023016 [Momordica charantia]	[more]
XP_022158042.1	1.9e-49	51.66	uncharacterized protein LOC111024621 [Momordica charantia]	[more]
XP_022156571.1	7.7e-43	51.96	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_024035690.1	1.4e-36	56.82	uncharacterized protein LOC112096473 [Citrus clementina]	[more]
XP_024045974.1	2.4e-36	56.82	uncharacterized protein LOC112100756 [Citrus clementina] >XP_024046421.1 unchara...	[more]

BLAST of Lag0039479 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0039479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPJ5	8.3e-51	70.20	uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DW49	9.2e-50	51.66	uncharacterized protein LOC111024621 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DVC6	3.7e-43	51.96	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A2N9ECS2	1.1e-39	64.06	RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4658 P...	[more]
A0A2N9FDC4	1.5e-39	63.28	Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16759 PE=4 SV=1	[more]

BLAST of Lag0039479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 406..491 e-value: 8.3E-20 score: 73.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..156
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 383..483
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 383..483
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 413..484

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039479.1	Lag0039479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity