Lag0039421 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039421
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein Ycf2-like
Locationchr2: 43354080 .. 43354613 (+)
RNA-Seq ExpressionLag0039421
SyntenyLag0039421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAACATCCACCAAATCTTGGGAGAGAAGTGCAGAGAAGCTTTCAGGAACACCCCTTTTGACGACCTCCTTAACTTCTCATTCAAGAAGACATCTTCCCAGTTACTGTTGTACCCGACCCAGCATCAGTGCAAACCAAAACGGGCATCAGAGCTTTATTTCATGATTGGTGGAAAAATCCTAAAGTTTGGTCTACGGGAGTTTGCACTAATTACGGGATTGAATTGTGGCCCATTGCCACAACTTGACAGAGACAGACTGAAAGATTCTTCAAGATTCAAGAATGAGTACTTCATCGACGGTGAGGGGGTCAAAAGAAAGACCCTGTATATAGTATTCAAGGCAATCAAACATGGTGTTGAGTCATACCTCACAAAGATGGTGCAGGTACACTGTTTAGAAAGCTTTCTATTACCCAAACAAGAAAAAGTGCACATTGAAGAGGATCATCTGCTAATGGTTGAAGACCAGGAGTTGTTCAACACCTTGATGTGCAATTTGCTTACCGCAAGTGTACGGGTCAAGTTATAA

mRNA sequence

ATGTACAACATCCACCAAATCTTGGGAGAGAAGTGCAGAGAAGCTTTCAGGAACACCCCTTTTGACGACCTCCTTAACTTCTCATTCAAGAAGACATCTTCCCAGTTACTGTTGTACCCGACCCAGCATCAGTGCAAACCAAAACGGGCATCAGAGCTTTATTTCATGATTGGTGGAAAAATCCTAAAGTTTGGTCTACGGGAGTTTGCACTAATTACGGGATTGAATTGTGGCCCATTGCCACAACTTGACAGAGACAGACTGAAAGATTCTTCAAGATTCAAGAATGAGTACTTCATCGACGGTGAGGGGGTCAAAAGAAAGACCCTGTATATAGTATTCAAGGCAATCAAACATGGTGTTGAGTCATACCTCACAAAGATGGTGCAGGTACACTGTTTAGAAAGCTTTCTATTACCCAAACAAGAAAAAGTGCACATTGAAGAGGATCATCTGCTAATGGTTGAAGACCAGGAGTTGTTCAACACCTTGATGTGCAATTTGCTTACCGCAAGTGTACGGGTCAAGTTATAA

Coding sequence (CDS)

ATGTACAACATCCACCAAATCTTGGGAGAGAAGTGCAGAGAAGCTTTCAGGAACACCCCTTTTGACGACCTCCTTAACTTCTCATTCAAGAAGACATCTTCCCAGTTACTGTTGTACCCGACCCAGCATCAGTGCAAACCAAAACGGGCATCAGAGCTTTATTTCATGATTGGTGGAAAAATCCTAAAGTTTGGTCTACGGGAGTTTGCACTAATTACGGGATTGAATTGTGGCCCATTGCCACAACTTGACAGAGACAGACTGAAAGATTCTTCAAGATTCAAGAATGAGTACTTCATCGACGGTGAGGGGGTCAAAAGAAAGACCCTGTATATAGTATTCAAGGCAATCAAACATGGTGTTGAGTCATACCTCACAAAGATGGTGCAGGTACACTGTTTAGAAAGCTTTCTATTACCCAAACAAGAAAAAGTGCACATTGAAGAGGATCATCTGCTAATGGTTGAAGACCAGGAGTTGTTCAACACCTTGATGTGCAATTTGCTTACCGCAAGTGTACGGGTCAAGTTATAA

Protein sequence

MYNIHQILGEKCREAFRNTPFDDLLNFSFKKTSSQLLLYPTQHQCKPKRASELYFMIGGKILKFGLREFALITGLNCGPLPQLDRDRLKDSSRFKNEYFIDGEGVKRKTLYIVFKAIKHGVESYLTKMVQVHCLESFLLPKQEKVHIEEDHLLMVEDQELFNTLMCNLLTASVRVKL
Homology
BLAST of Lag0039421 vs. NCBI nr
Match: KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 68/159 (42.77%), Postives = 99/159 (62.26%), Query Frame = 0

Query: 4   IHQILGEKCREAFRNTPFDDLLNFSFKKTSSQLLLYPTQHQCKPKRASELYFMIGGKILK 63
           I + LG++    FR   F   LN S    SSQLLL+  Q  CKPK  S+L F+IGG++L+
Sbjct: 192 IKENLGDRLINRFREGIFGHFLNLSITNQSSQLLLHLIQRMCKPKSTSQLQFLIGGRVLR 251

Query: 64  FGLREFALITGLNCGPLPQLDRDRLKDSSRFKNEYFIDGEGVKRKTLYIVFKAIKHGVES 123
           FGLREFALITGL C  +P ++ + +    R K  YF + + V R+ L ++F     G + 
Sbjct: 252 FGLREFALITGLRCHEIPDINHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDD 311

Query: 124 YLTKMVQVHCLESFLLPKQEKVHIEEDHLLMVEDQELFN 163
              KM +++ LESFL+PKQE   ++ DH++MV+D E+F+
Sbjct: 312 DRIKMAKLYFLESFLIPKQECPSVDWDHIIMVDDDEVFD 350

BLAST of Lag0039421 vs. NCBI nr
Match: XP_024031030.1 (uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031032.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031033.1 uncharacterized protein LOC21394043 [Morus notabilis])

HSP 1 Score: 117.9 bits (294), Expect = 9.1e-23
Identity = 63/159 (39.62%), Postives = 102/159 (64.15%), Query Frame = 0

Query: 4   IHQILGEKCREAFRNTPFDDLLNFSFKKTSSQLLLYPTQHQCKPKRASELYFMIGGKILK 63
           +++ L  + +E FR   F  LL+F  KK  SQL+ +    QC   + +EL+F I G I+K
Sbjct: 111 LNEKLTARQKELFRKGCFGHLLDFKIKKFPSQLIHHLILRQCPQAKKNELWFDIEGAIVK 170

Query: 64  FGLREFALITGLNCGPLPQLDRDRLKDSSRFKNEYFIDGEGVKRKTLYIVFKAIKHGVES 123
           FG++EFALITGLNC   P +   +L +S+  K ++F  G+ V+R  L  VF+A + G + 
Sbjct: 171 FGMKEFALITGLNCSNYPFIFEKQLPESTT-KRKFFRKGKSVQRIKLNDVFRANRGGTDE 230

Query: 124 YLTKMVQVHCLESFLLPKQEKVHIEEDHLLMVEDQELFN 163
            + K+ +++CLES L+PK+ + +I+ +HL MV++ ELF+
Sbjct: 231 DIVKLAKLYCLESLLIPKKIENNIDPNHLKMVDNPELFD 268

BLAST of Lag0039421 vs. NCBI nr
Match: EXC30509.1 (hypothetical protein L484_010758 [Morus notabilis])

HSP 1 Score: 117.9 bits (294), Expect = 9.1e-23
Identity = 63/159 (39.62%), Postives = 102/159 (64.15%), Query Frame = 0

Query: 4   IHQILGEKCREAFRNTPFDDLLNFSFKKTSSQLLLYPTQHQCKPKRASELYFMIGGKILK 63
           +++ L  + +E FR   F  LL+F  KK  SQL+ +    QC   + +EL+F I G I+K
Sbjct: 111 LNEKLTARQKELFRKGCFGHLLDFKIKKFPSQLIHHLILRQCPQAKKNELWFDIEGAIVK 170

Query: 64  FGLREFALITGLNCGPLPQLDRDRLKDSSRFKNEYFIDGEGVKRKTLYIVFKAIKHGVES 123
           FG++EFALITGLNC   P +   +L +S+  K ++F  G+ V+R  L  VF+A + G + 
Sbjct: 171 FGMKEFALITGLNCSNYPFIFEKQLPESTT-KRKFFRKGKSVQRIKLNDVFRANRGGTDE 230

Query: 124 YLTKMVQVHCLESFLLPKQEKVHIEEDHLLMVEDQELFN 163
            + K+ +++CLES L+PK+ + +I+ +HL MV++ ELF+
Sbjct: 231 DIVKLAKLYCLESLLIPKKIENNIDPNHLKMVDNPELFD 268

BLAST of Lag0039421 vs. NCBI nr
Match: XP_038883715.1 (uncharacterized protein LOC120074618 isoform X1 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-21
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 0

Query: 4   IHQILGEKCREAFRNTPFDDLLNFSFKKTSSQLLLYPTQHQCKPKRASELYFMIGGKILK 63
           I   L E+  + F+ + F D L+    K SSQL  +  + QC     +EL+F + G+I K
Sbjct: 593 IKNTLNERQLKKFKKSCFGDFLDLKITKFSSQLFYHLVRRQCCSTNRNELWFNLEGRIHK 652

Query: 64  FGLREFALITGLNCGPLPQLDRDRLKDSSRFKNEYFIDGEGVKRKTLYIVFKAIKHGVES 123
           FG++EF+LITGLNCG LP++D  +++   +F   YF   + +KR  L+ VF  +  G   
Sbjct: 653 FGMKEFSLITGLNCGELPEIDMSKIQ-KGKFNKRYFGGEKTIKRTKLHEVFTEMDKGRNK 712

Query: 124 YLTKMVQVHCLESFLLPKQEKVHIEEDHLLMVEDQELFN 163
            + KM +++ LE F+L KQ +  I  ++ L+V+D+E F+
Sbjct: 713 DVVKMAKLYILEMFILGKQIRTGINHEYTLLVDDKEQFD 750

BLAST of Lag0039421 vs. NCBI nr
Match: XP_038883719.1 (uncharacterized protein LOC120074618 isoform X5 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-21
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 0

Query: 4   IHQILGEKCREAFRNTPFDDLLNFSFKKTSSQLLLYPTQHQCKPKRASELYFMIGGKILK 63
           I   L E+  + F+ + F D L+    K SSQL  +  + QC     +EL+F + G+I K
Sbjct: 587 IKNTLNERQLKKFKKSCFGDFLDLKITKFSSQLFYHLVRRQCCSTNRNELWFNLEGRIHK 646

Query: 64  FGLREFALITGLNCGPLPQLDRDRLKDSSRFKNEYFIDGEGVKRKTLYIVFKAIKHGVES 123
           FG++EF+LITGLNCG LP++D  +++   +F   YF   + +KR  L+ VF  +  G   
Sbjct: 647 FGMKEFSLITGLNCGELPEIDMSKIQ-KGKFNKRYFGGEKTIKRTKLHEVFTEMDKGRNK 706

Query: 124 YLTKMVQVHCLESFLLPKQEKVHIEEDHLLMVEDQELFN 163
            + KM +++ LE F+L KQ +  I  ++ L+V+D+E F+
Sbjct: 707 DVVKMAKLYILEMFILGKQIRTGINHEYTLLVDDKEQFD 744

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047596.12.5e-2842.77protein Ycf2-like [Cucumis melo var. makuwa][more]
XP_024031030.19.1e-2339.62uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacte... [more]
EXC30509.19.1e-2339.62hypothetical protein L484_010758 [Morus notabilis][more]
XP_038883715.12.9e-2136.48uncharacterized protein LOC120074618 isoform X1 [Benincasa hispida][more]
XP_038883719.12.9e-2136.48uncharacterized protein LOC120074618 isoform X5 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015410Domain of unknown function DUF1985PFAMPF09331DUF1985coord: 44..162
e-value: 8.5E-18
score: 64.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039421.1Lag0039421.1mRNA