Lag0039410 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039410
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 43158353 .. 43159024 (-)
RNA-Seq ExpressionLag0039410
SyntenyLag0039410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTTCTTATGGGACTTAACGAATCTTTCAGTCAGATTCGCACACAATTACTCCTTATGGAGCCTGAGCCGTCCGTCCAGCGAGCCTTCTCCATTGTTGCCAAGAAGTTGAATAGAGGATTTCAGTCATTTCTCCTTCTATATCTTCGGCCAATTCGGTAAGCTCGCCCACTGCTCTCCTCGTTAAGGCTAAGTCGTCTTCCACCTCTTGTTCACAGAACAAAACACCAAAAAGAAAGAACGTCAGATGTGCACTCATTGTAATGTTTTGGGACACACTGTCGACCGTTGTTACAAGTTGCACGGATACTCTCCGGGTTATCGCAATCAGAAATCCAGCTCTACAAAGTCAGATGCTTCAAGTTCTAGCACCTCCAGTGGTGATTCTTTGGCCCAATTTGACAATCGAACAGTGTAAAGGCTTATTGGTTTGTGCTTCAAAATCATTTTGACTAAGGCTGGCTTCTTCTGATAGCTCTTCCTCTACTCATGTAGCAGGTATTTGTTCTCATTCTTCAAACTCCCAATGGCTTACTTTCTACATCATGGGGTGTTAGATTCTGGTTGCCTCCATTCATATATGCTTTTTACGAGAATTCTTTGCTCATATGGTCCCTGTATCTGGAAAGTTTGTCACACTGCCTAACCAAACCAGAATATTTTGGTTGA

mRNA sequence

ATGGCCTTTCTTATGGGACTTAACGAATCTTTCAGTCAGATTCGCACACAATTACTCCTTATGGAGCCTGAGCCGTCCGTCCAGCGAGCCTTCTCCATTGTTGCCAAGAAGTTGAATAGAGGATTTCAGTCATTTCTCCTTCTATATCTTCGGCCAATTCGTTGCACGGATACTCTCCGGGTTATCGCAATCAGAAATCCAGCTCTACAAAGTCAGATGCTTCAAGTTCTAGCACCTCCAGTGGTGATTCTTTGGCCCAATTTGACAATCGAACAGTGTAAAGGCTTATTGGTATTTGTTCTCATTCTTCAAACTCCCAATGGCTTACTTTCTACATCATGGGGTGTTAGATTCTGGTTGCCTCCATTCATATATGCTTTTTACGAGAATTCTTTGCTCATATGGTCCCTGTATCTGGAAAGTTTGTCACACTGCCTAACCAAACCAGAATATTTTGGTTGA

Coding sequence (CDS)

ATGGCCTTTCTTATGGGACTTAACGAATCTTTCAGTCAGATTCGCACACAATTACTCCTTATGGAGCCTGAGCCGTCCGTCCAGCGAGCCTTCTCCATTGTTGCCAAGAAGTTGAATAGAGGATTTCAGTCATTTCTCCTTCTATATCTTCGGCCAATTCGTTGCACGGATACTCTCCGGGTTATCGCAATCAGAAATCCAGCTCTACAAAGTCAGATGCTTCAAGTTCTAGCACCTCCAGTGGTGATTCTTTGGCCCAATTTGACAATCGAACAGTGTAAAGGCTTATTGGTATTTGTTCTCATTCTTCAAACTCCCAATGGCTTACTTTCTACATCATGGGGTGTTAGATTCTGGTTGCCTCCATTCATATATGCTTTTTACGAGAATTCTTTGCTCATATGGTCCCTGTATCTGGAAAGTTTGTCACACTGCCTAACCAAACCAGAATATTTTGGTTGA

Protein sequence

MAFLMGLNESFSQIRTQLLLMEPEPSVQRAFSIVAKKLNRGFQSFLLLYLRPIRCTDTLRVIAIRNPALQSQMLQVLAPPVVILWPNLTIEQCKGLLVFVLILQTPNGLLSTSWGVRFWLPPFIYAFYENSLLIWSLYLESLSHCLTKPEYFG
Homology
[Close]
BLAST of Lag0039410 vs. NCBI nr
Match: XP_031737360.1 (uncharacterized protein LOC116402241 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-05
Identity = 27/40 (67.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1  MAFLMGLNESFSQIRTQLLLMEPEPSVQRAFSIVAKKLNR 41
          M+FLMGLN+SFSQIRTQLLLMEPEP++Q+ FS+V +++ +
Sbjct: 1  MSFLMGLNDSFSQIRTQLLLMEPEPTLQKVFSLVVQEVEQ 40

[Close]
BLAST of Lag0039410 vs. NCBI nr
Match: XP_022141216.1 (uncharacterized protein LOC111011669 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-05
Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1  MAFLMGLNESFSQIRTQLLLMEPEPSVQRAFSIVAKKLNR 41
          MAFLMGLNESF+Q+R QLLLMEPE ++ RAFS+VA+++ +
Sbjct: 1  MAFLMGLNESFNQVRAQLLLMEPEXTINRAFSLVAQEVEQ 40

[Close]
BLAST of Lag0039410 vs. NCBI nr
Match: XP_038896588.1 (uncharacterized protein LOC120084843 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-05
Identity = 27/40 (67.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   MAFLMGLNESFSQIRTQLLLMEPEPSVQRAFSIVAKKLNR 41
           MAFLMGLN+S + IR+QLLLMEPEPS+ RAFS+VA+++++
Sbjct: 114 MAFLMGLNDSSAPIRSQLLLMEPEPSINRAFSLVAQEIDQ 153

[Close]
BLAST of Lag0039410 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-05
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1   MAFLMGLNESFSQIRTQLLLMEPEPSVQRAFSIVAKKLNR 41
           MAFLMGLN SFSQIR QLLLMEP P++ RAF++VA+++ +
Sbjct: 195 MAFLMGLNVSFSQIRAQLLLMEPAPTINRAFALVAQEMQQ 234

[Close]
BLAST of Lag0039410 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-05
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MAFLMGLNESFSQIRTQLLLMEPEPSVQRAFSIVAKK 38
           M FLMGLNESFSQ+R QLLLMEPEP++ R FS+V+++
Sbjct: 194 MCFLMGLNESFSQLRVQLLLMEPEPTINRVFSLVSQE 230

The following BLAST results are available for this feature:
BLAST of Lag0039410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031737360.12.0e-0567.50uncharacterized protein LOC116402241 [Cucumis sativus][more]
XP_022141216.14.4e-0567.50uncharacterized protein LOC111011669 [Momordica charantia][more]
XP_038896588.17.4e-0567.50uncharacterized protein LOC120084843 [Benincasa hispida][more]
XP_022154919.19.7e-0567.50uncharacterized protein LOC111022065 [Momordica charantia][more]
XP_022152756.19.7e-0570.27uncharacterized protein LOC111020399 [Momordica charantia][more]
BLAST of Lag0039410 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039410.1Lag0039410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding