Lag0039372 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039372
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGlycerophosphodiester phosphodiesterase
Locationchr2: 42317898 .. 42318834 (-)
RNA-Seq ExpressionLag0039372
SyntenyLag0039372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATCTCCACCGCTAGACATGGAAGGAGGCGTTGGATTGGGCACAGAACATTGCGCAATCGATTCCCCTTCAGATTTTCTTCCCGTCGACTCTTTCGTCTCACTATCCTATGCCTCGCTTTCATGGCAATTCTTCCTCCCATTTTCTTCCATTTCAAGCTCAAGCGCTTTCAGCAGGTACCCCTTCTCCCTCTCTGCTCTCTACCCTCTTATTCAATTCCAACATCTCATGATTGCTTCTGTTTCTTCTCTGTACAGATGCAACAAAGGAACTGCAAATGGCTGAATGATCCTCCTCTTGTGTGTGCTCATGGGGGCGACTCATCCAAGGCCTTTCCGAACACTGTACTTGTCCTCTATTCTCTTTCTCCGTCCAAAGTTTTCTCAATAAATTGAAATATCGAATCATCTTCGGTTCCCTTTGTGGTTCTTTGTTGGTTATGTTCTTGTCCTCTTCAATTCGAACAGATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCTGATGGAGTCTTATTTGCACTTCATGACAGGTATTTATCAAAAGTGTGTATAACACATGTATGTGCACAGATTAAATTATTAAGATATTCCTAGCATTGGGTTGTGGTCAAGGTGTATAAAGTCTTGAAATATTCTGTGGTTTGAGCTGATATGCCACAATAGTTGGTGATATTGAGCTAATATGCCACAATAGTTGGGTTCACTCGGTTCTTTTATCATACTTTACGACGTTTTATTCTCATATTAAGAAACTTTTGAAGATATTTGGAGGTTTGATTATTACCTGACAGGCAGGGACTTGCAGAGGATAACCGGATCAAATACTTCCAAAGTTGGAAATTTTAGCATGAAAGAGGTGAGTGCAGATTCTGCTGTTCCGTTTGATATCTATATTTAG

mRNA sequence

ATGGCGATCTCCACCGCTAGACATGGAAGGAGGCGTTGGATTGGGCACAGAACATTGCGCAATCGATTCCCCTTCAGATTTTCTTCCCGTCGACTCTTTCGTCTCACTATCCTATGCCTCGCTTTCATGGCAATTCTTCCTCCCATTTTCTTCCATTTCAAGCTCAAGCGCTTTCAGCAGATGCAACAAAGGAACTGCAAATGGCTGAATGATCCTCCTCTTGTGTGTGCTCATGGGGGCGACTCATCCAAGGCCTTTCCGAACACTATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCTGATGGAGTCTTATTTGCACTTCATGACAGGGACTTGCAGAGGATAACCGGATCAAATACTTCCAAAGTTGGAAATTTTAGCATGAAAGAGGTGAGTGCAGATTCTGCTGTTCCGTTTGATATCTATATTTAG

Coding sequence (CDS)

ATGGCGATCTCCACCGCTAGACATGGAAGGAGGCGTTGGATTGGGCACAGAACATTGCGCAATCGATTCCCCTTCAGATTTTCTTCCCGTCGACTCTTTCGTCTCACTATCCTATGCCTCGCTTTCATGGCAATTCTTCCTCCCATTTTCTTCCATTTCAAGCTCAAGCGCTTTCAGCAGATGCAACAAAGGAACTGCAAATGGCTGAATGATCCTCCTCTTGTGTGTGCTCATGGGGGCGACTCATCCAAGGCCTTTCCGAACACTATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCTGATGGAGTCTTATTTGCACTTCATGACAGGGACTTGCAGAGGATAACCGGATCAAATACTTCCAAAGTTGGAAATTTTAGCATGAAAGAGGTGAGTGCAGATTCTGCTGTTCCGTTTGATATCTATATTTAG

Protein sequence

MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQMQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRDLQRITGSNTSKVGNFSMKEVSADSAVPFDIYI
Homology
[Close]
BLAST of Lag0039372 vs. NCBI nr
Match: XP_031741802.1 (glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0 

Query: 1   MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQ 60
           MAIST+R GRRRWIG RT RNRFPFRFSSRRLFRLTILCLA +AILPPI+FHFKLKRFQQ
Sbjct: 1   MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLAIIAILPPIYFHFKLKRFQQ 60

Query: 61  MQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120
           +QQRNCKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH
Sbjct: 61  IQQRNCKWLTHPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120

Query: 121 DRDLQRITGSNTSKVGNFSMKEVSADSAV 150
           DRDLQRITGSN+SKVGN+SMKE+    AV
Sbjct: 121 DRDLQRITGSNSSKVGNYSMKEIKNLGAV 149

[Close]
BLAST of Lag0039372 vs. NCBI nr
Match: XP_011656047.1 (glycerophosphodiester phosphodiesterase GDPD4 isoform X3 [Cucumis sativus] >KAE8648976.1 hypothetical protein Csa_007803 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0 

Query: 1   MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQ 60
           MAIST+R GRRRWIG RT RNRFPFRFSSRRLFRLTILCLA +AILPPI+FHFKLKRFQQ
Sbjct: 1   MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLAIIAILPPIYFHFKLKRFQQ 60

Query: 61  MQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120
           +QQRNCKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH
Sbjct: 61  IQQRNCKWLTHPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120

Query: 121 DRDLQRITGSNTSKVGNFSMKEVSADSAV 150
           DRDLQRITGSN+SKVGN+SMKE+    AV
Sbjct: 121 DRDLQRITGSNSSKVGNYSMKEIKNLGAV 149

[Close]
BLAST of Lag0039372 vs. NCBI nr
Match: XP_004141522.1 (glycerophosphodiester phosphodiesterase GDPD4 isoform X4 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0 

Query: 1   MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQ 60
           MAIST+R GRRRWIG RT RNRFPFRFSSRRLFRLTILCLA +AILPPI+FHFKLKRFQQ
Sbjct: 1   MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLAIIAILPPIYFHFKLKRFQQ 60

Query: 61  MQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120
           +QQRNCKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH
Sbjct: 61  IQQRNCKWLTHPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120

Query: 121 DRDLQRITGSNTSKVGNFSMKEVSADSAV 150
           DRDLQRITGSN+SKVGN+SMKE+    AV
Sbjct: 121 DRDLQRITGSNSSKVGNYSMKEIKNLGAV 149

[Close]
BLAST of Lag0039372 vs. NCBI nr
Match: XP_031741801.1 (glycerophosphodiester phosphodiesterase GDPD4 isoform X1 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0 

Query: 1   MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQ 60
           MAIST+R GRRRWIG RT RNRFPFRFSSRRLFRLTILCLA +AILPPI+FHFKLKRFQQ
Sbjct: 1   MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLAIIAILPPIYFHFKLKRFQQ 60

Query: 61  MQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120
           +QQRNCKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH
Sbjct: 61  IQQRNCKWLTHPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120

Query: 121 DRDLQRITGSNTSKVGNFSMKEVSADSAV 150
           DRDLQRITGSN+SKVGN+SMKE+    AV
Sbjct: 121 DRDLQRITGSNSSKVGNYSMKEIKNLGAV 149

[Close]
BLAST of Lag0039372 vs. NCBI nr
Match: XP_038890900.1 (glycerophosphodiester phosphodiesterase GDPD4 isoform X6 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0 

Query: 1   MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQ 60
           MAIS +R GRRRWIG R  RNRFPFRFSSRRLFRLTILCLAF+AILPPI+FHFKLKRFQQ
Sbjct: 1   MAISISRVGRRRWIGQRPWRNRFPFRFSSRRLFRLTILCLAFIAILPPIYFHFKLKRFQQ 60

Query: 61  MQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120
           MQQR CKWLN PPLVCAHGGDSSKAFPNTMDAY+ ALRSQANCIEVDVSRSSDGVLFALH
Sbjct: 61  MQQRKCKWLNHPPLVCAHGGDSSKAFPNTMDAYNKALRSQANCIEVDVSRSSDGVLFALH 120

Query: 121 DRDLQRITGSNTSKVGNFSMKEVSADS 148
           DRDLQRITGSNTSKVGNFSMKE+ A S
Sbjct: 121 DRDLQRITGSNTSKVGNFSMKELMAKS 147

[Close]
BLAST of Lag0039372 vs. ExPASy Swiss-Prot
Match: F4I8H8 (Glycerophosphodiester phosphodiesterase GDPD4 OS=Arabidopsis thaliana OX=3702 GN=GDPD4 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.8e-41
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 0 

Query: 1   MAISTARHGRRRWIGHRTLRNRFPFRFSSRRLFRLTILCLAFMAILPPIFFHFKLKRFQQ 60
           MAI   RH RR + G  T R RF     SR   R  +  + F+AI PP++FHFKL+R +Q
Sbjct: 1   MAIFEWRHRRRPFDGGGTRRRRFFSPLYSRNFKRTILFAVIFLAIFPPLYFHFKLRRIRQ 60

Query: 61  MQQRNCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALH 120
           +  + C WL+ PPLVCAHGGDS+ AFPNTMDAYS A+RS+ +CIEVDVSRSSDGVLFALH
Sbjct: 61  IVAQKCDWLHHPPLVCAHGGDSTLAFPNTMDAYSFAIRSRVDCIEVDVSRSSDGVLFALH 120

Query: 121 DRDLQRITGSNTSKVGNFSMKEV 144
           +RDLQRI  +++ +VG+ SMK++
Sbjct: 121 NRDLQRIARNSSVQVGDLSMKQI 143

[Close]
BLAST of Lag0039372 vs. ExPASy Swiss-Prot
Match: O14169 (Phosphatidylglycerol phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4D7.02c PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 72  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRDLQRITG 130
           PPLV AH G  +K   NT+ A+  A+++ A+C+E DV  + D V+  LHDR+L R+ G
Sbjct: 31  PPLVIAHRGYKAKYPENTILAFQQAVKAGADCVETDVRLTKDEVVCILHDRNLNRVFG 88

[Close]
BLAST of Lag0039372 vs. ExPASy Swiss-Prot
Match: P9WMU2 (Probable glycerophosphodiester phosphodiesterase 1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=glpQ1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 73  PLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRDLQRITGSNT 132
           P V AH G S+    +T+ AY +AL+  A+ +E DV  + DG L  +HDR L R T +  
Sbjct: 12  PFVVAHRGASAARPEHTLAAYDLALKEGADGVECDVRLTRDGHLVCVHDRRLDR-TSTGA 71

Query: 133 SKVGNFSMKEV 144
             V   ++ ++
Sbjct: 72  GLVSTMTLAQL 81

[Close]
BLAST of Lag0039372 vs. ExPASy Swiss-Prot
Match: P9WMU3 (Probable glycerophosphodiester phosphodiesterase 1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=glpQ1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 73  PLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRDLQRITGSNT 132
           P V AH G S+    +T+ AY +AL+  A+ +E DV  + DG L  +HDR L R T +  
Sbjct: 12  PFVVAHRGASAARPEHTLAAYDLALKEGADGVECDVRLTRDGHLVCVHDRRLDR-TSTGA 71

Query: 133 SKVGNFSMKEV 144
             V   ++ ++
Sbjct: 72  GLVSTMTLAQL 81

[Close]
BLAST of Lag0039372 vs. ExPASy Swiss-Prot
Match: Q99LY2 (Lysophospholipase D GDPD3 OS=Mus musculus OX=10090 GN=Gdpd3 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 21/60 (35.00%), Postives = 34/60 (56.67%), Query Frame = 0 

Query: 72  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRDLQRITGSN 131
           P  + AH G S +   NTM+A   ++  +A+ +E D   + DGV+   HD++L R +G N
Sbjct: 38  PIRLAAHRGGSGERLENTMEAVENSMAQRADLLEFDCQLTRDGVVVVSHDKNLSRQSGLN 97

The following BLAST results are available for this feature:
BLAST of Lag0039372 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031741802.14.8e-6888.59glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis sativus][more]
XP_011656047.14.8e-6888.59glycerophosphodiester phosphodiesterase GDPD4 isoform X3 [Cucumis sativus] >KAE8... [more]
XP_004141522.14.8e-6888.59glycerophosphodiester phosphodiesterase GDPD4 isoform X4 [Cucumis sativus][more]
XP_031741801.14.8e-6888.59glycerophosphodiester phosphodiesterase GDPD4 isoform X1 [Cucumis sativus][more]
XP_038890900.11.1e-6789.80glycerophosphodiester phosphodiesterase GDPD4 isoform X6 [Benincasa hispida][more]
BLAST of Lag0039372 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I8H88.8e-4158.04Glycerophosphodiester phosphodiesterase GDPD4 OS=Arabidopsis thaliana OX=3702 GN... [more]
O141691.1e-0644.83Phosphatidylglycerol phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ... [more]
P9WMU23.9e-0435.21Probable glycerophosphodiester phosphodiesterase 1 OS=Mycobacterium tuberculosis... [more]
P9WMU33.9e-0435.21Probable glycerophosphodiester phosphodiesterase 1 OS=Mycobacterium tuberculosis... [more]
Q99LY28.6e-0435.00Lysophospholipase D GDPD3 OS=Mus musculus OX=10090 GN=Gdpd3 PE=1 SV=2[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamilyGENE3D3.20.20.190Phosphatidylinositol (PI) phosphodiesterasecoord: 52..149
e-value: 8.9E-19
score: 69.8
IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamilySUPERFAMILY51695PLC-like phosphodiesterasescoord: 71..129
IPR030395Glycerophosphodiester phosphodiesterase domainPFAMPF03009GDPDcoord: 82..144
e-value: 2.3E-11
score: 43.9
IPR030395Glycerophosphodiester phosphodiesterase domainPROSITEPS51704GP_PDEcoord: 73..155
score: 16.854956
IPR044236Glycerophosphodiester phosphodiesterase GDPD4PANTHERPTHR47449GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD4coord: 8..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039372.1Lag0039372.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006071 glycerol metabolic process
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008889 glycerophosphodiester phosphodiesterase activity
molecular_function GO:0008081 phosphoric diester hydrolase activity