Lag0039366 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039366
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr2: 42250165 .. 42252256 (+)
RNA-Seq Expression	Lag0039366
Synteny	Lag0039366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTAGAATAAATGGCATTCATAGAAATCCCTGGGAGAGCATATCAAAACAGTGGAGGTTGGTGCAGTATCTTCCCTCTTCTAAATTGGCAATGGTAAAAGAGTTCTTGTTTTGGGAAGATGTATGGCTTGGTCATGGTGAGACTCTTATGCTTAGATTTTCACACCTTTTTAGGGTGTCTTCAAAACCAAATTGTTCTGTTTTTACTGTTGGGATGGAATTTACCGATCTTGAAAACTCATCACAAGAAGAAACTGTAAGGAAGAGGAAATAGGGAATTTAGTTCTCTATTATCATTTTCGGAAGTCACTCAGATACAAGCCAAAGATGATTCAAGATTTTTTTTGGCTCTGGGTATTCTCCTCCTTTTTTAAGGACATTCTTCATTAGCTTTTACTTGGTCTCTCATTGGCCTCAAAGTCTCTTTTATTGTGGTCTAATGCATTCAAGGCTTTTCTTTCGAAACTATGGATGAAAGAATTTTGAGAATCCTCGAGGATAAAGCTTCTTCCGCCATGGGTTCTCTGTCAGATGGCGGAGGAAGACCTCGATCATATTCTCTATCAGATGACAGAGGAAGACCTCGATCAGATGTTGGGGGTGGCCTAGCCATGGGTTCATTCAAAAGGTTAAGGCACTTAAAGGAGTTTTGGAAGAATGGAACTATGCCACCTTTGGTTGCACTCAAATCAAGAAAGTTGACTTGCCTAATGAGCTAAACAGGATTGATGGCCAAGAGGAAACTTATGGTATTGATTGAGCCCTTAACCAAAGAAGAATCGAGATTAAGACATAATACTTCCTATTTCATCCAAAGAAGAGACATCTTGGTGTCAAAAATGAAAATTGAAATGGGCCCTTAAAAGGCGATAAAAACAGTAGTTTCTTTCCCGATTATGTCCTCTCGGTGAAGGAAAAATACCATGGTTGAAATCCTGTTTGAGCTTGGTGTGATAGACGATGATATTGAGACTAAATTTATCGATTTCTTTAAAGGGCTTTACACGAAGAATCGAGGTAATAGAAAACTTCCATCCATCGATAATTGGGATTCAATATTTGTAGAACAGTCACATGCTCCTTCGCTAATGAGGAAATATTGAATAGCCACATTCAAAATTTGGGCACAAGCAAGGCCCCTGGACTAGATGGCTTTTCTTCCGAGTTCTTTAAAAATCATTGGAACTTCCTCAAGGATGACATTAAGAGTGTTCCAAGGCTTTTTTTTTTTTTTTTTTTGTTTGTTAGAATGCCATTATTAACTCAAGTTTAAATGAAACATATATTAGCCTCATCCCCAAGAAGAGCGATGCCGAAACGGTGGGTGAGCCTTACATCGTGCATTTATAAGATCATTGCCAGGGTACTTTCTTAGCATCTTAAAAGGGTTCTTCCTTGCACCATCATAAATTTTGCCTTTCTGGCTAACAGACAGATTATTGATGCATCCAACTCATTTTGGGGGGGGGGGGGGGTTGTCATCAAACTGGATATTGAAAAAGCCTTCAACATGCCTTCAACATGGTTGATTGGGAATTTCTCTGAGGACATTTTAGTTGCAAAAGGGTTTGTCACAAGTGGAGAAGATGGATCTTGGGTTGTATTTCATTGGCCAATTACTCCATTATCATCCATGGTAAACCTAGGGGTAAGATTATTTAGGGGTCTTCGCCAAGGAGATCCCCTCTCCTTTTTATCCTTATGGTTTACTGCTTAAGTCAGATGCTATTGAAAGAGGCTAGTCTTGGAAACATAAAAAGATTTGAGGTTGGGGTTATCGACTCTCCATAAATCACCTTCAGTTGGTCAATGTTACGATTCTCTTTTCTTCGCCCGTCAAAGGCTTGCTAACATCTTTCTTCTCCACCATTCACGCCTTCAAAGAAGCCTCGGGTCTCCACATTAATCATAAGATGTTTGAGTTTATAGGCATCAATTTACCATTGGAAATCGTTGCCTCCCTTGCCTCTGATTTTGGCTGTGAGGTCGTATCATGGCCAACGACTTATGTGGGTCTCCTTCTTCATGGAAAGCCCTTTACCATTTCTTTTGGGATCTTATTATTGAGAAGGTTGAGAGACGGCTAA

mRNA sequence

ATGAGAGGTAGAATAAATGGCATTCATAGAAATCCCTGGGAGAGCATATCAAAACAGTGGAGGTTGGTGCAGTATCTTCCCTCTTCTAAATTGGCAATGGTAAAAGAGTTCTTGTTTTGGGAAGATGTATGGCTTGGTCATGGCTTTTCTTTCGAAACTATGGATGAAAGAATTTTGAGAATCCTCGAGGATAAAGCTTCTTCCGCCATGGGTTCTCTGTCAGATGGCGGAGGAAGACCTCGATCATATTCTCTATCAGATGACAGAGGAAGACCTCGATCAGATGTTGGGGGTGGCCTAGCCATGGGTTCATTCAAAAGACAGATTATTGATGCATCCAACTCATTTTGGGGGGGGGGGGGGGTTGTCATCAAACTGGATATTGAAAAAGCCTTCAACATGCCTTCAACATGGTTGATTGGGAATTTCTCTGAGGACATTTTAGTTGCAAAAGGGTTTGTCACAAGTGGAGAAGATGGATCTTGGGTTGTATTTCATTGGCCAATTACTCCATTATCATCCATGGTAAACCTAGGGTTGGTCAATGTTACGATTCTCTTTTCTTCGCCCGTCAAAGGCTTGCTAACATCTTTCTTCTCCACCATTCACGCCTTCAAAGAAGCCTCGGGTCTCCACATTAATCATAAGATGTTTGAGTTTATAGGCATCAATTTACCATTGGAAATCGTTGCCTCCCTTGCCTCTGATTTTGGCTGTGAGGTCGTATCATGGCCAACGACTTATGTGGGTCTCCTTCTTCATGGAAAGCCCTTTACCATTTCTTTTGGGATCTTATTATTGAGAAGGTTGAGAGACGGCTAA

Coding sequence (CDS)

ATGAGAGGTAGAATAAATGGCATTCATAGAAATCCCTGGGAGAGCATATCAAAACAGTGGAGGTTGGTGCAGTATCTTCCCTCTTCTAAATTGGCAATGGTAAAAGAGTTCTTGTTTTGGGAAGATGTATGGCTTGGTCATGGCTTTTCTTTCGAAACTATGGATGAAAGAATTTTGAGAATCCTCGAGGATAAAGCTTCTTCCGCCATGGGTTCTCTGTCAGATGGCGGAGGAAGACCTCGATCATATTCTCTATCAGATGACAGAGGAAGACCTCGATCAGATGTTGGGGGTGGCCTAGCCATGGGTTCATTCAAAAGACAGATTATTGATGCATCCAACTCATTTTGGGGGGGGGGGGGGGTTGTCATCAAACTGGATATTGAAAAAGCCTTCAACATGCCTTCAACATGGTTGATTGGGAATTTCTCTGAGGACATTTTAGTTGCAAAAGGGTTTGTCACAAGTGGAGAAGATGGATCTTGGGTTGTATTTCATTGGCCAATTACTCCATTATCATCCATGGTAAACCTAGGGTTGGTCAATGTTACGATTCTCTTTTCTTCGCCCGTCAAAGGCTTGCTAACATCTTTCTTCTCCACCATTCACGCCTTCAAAGAAGCCTCGGGTCTCCACATTAATCATAAGATGTTTGAGTTTATAGGCATCAATTTACCATTGGAAATCGTTGCCTCCCTTGCCTCTGATTTTGGCTGTGAGGTCGTATCATGGCCAACGACTTATGTGGGTCTCCTTCTTCATGGAAAGCCCTTTACCATTTCTTTTGGGATCTTATTATTGAGAAGGTTGAGAGACGGCTAA

Protein sequence

MRGRINGIHRNPWESISKQWRLVQYLPSSKLAMVKEFLFWEDVWLGHGFSFETMDERILRILEDKASSAMGSLSDGGGRPRSYSLSDDRGRPRSDVGGGLAMGSFKRQIIDASNSFWGGGGVVIKLDIEKAFNMPSTWLIGNFSEDILVAKGFVTSGEDGSWVVFHWPITPLSSMVNLGLVNVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCEVVSWPTTYVGLLLHGKPFTISFGILLLRRLRDG

Homology

[Close]

BLAST of Lag0039366 vs. NCBI nr
Match: VVA31869.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-06
Identity = 56/202 (27.72%), Postives = 87/202 (43.07%), Query Frame = 0


Query: 101 AMGSF--KRQIIDA---SNSF------WGGGGVVIKLDIEKAFNMPSTWLIGNFSEDILV 160
           + G+F  KRQI+DA   +N            G+V K+D EKA++    W   NF +D+L 
Sbjct: 196 SQGAFVQKRQILDAVLVANEVVEEVRKQNRKGLVFKIDFEKAYDHVE-W---NFVDDVLA 255

Query: 161 AKGF-------VTSGEDGSWVVFHWPITPLSSMV----------------------NLGL 220
            KGF       +  G+  S  +F      LS ++                      +L  
Sbjct: 256 RKGFGFRASRGLRQGDPLSPFLFTLVSDVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQF 315

Query: 221 VNVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCE 263
            + TI F    +    +    +  F + SG+ IN      +GIN  +E + ++A  +GCE
Sbjct: 316 ADDTIFFLDGKEEYWLNLLQMLKLFCDVSGMKINKAKSCILGINFSIETLNNMAGSWGCE 375

[Close]

BLAST of Lag0039366 vs. NCBI nr
Match: XP_004146266.1 (uncharacterized protein LOC101206158 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 7.0e-06
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 168 PITPLSSMVNLGL-VNVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLP 227
           PI+P   MV+LG  ++  +  +SP+  L   F    + F+ ASG  IN    E +GINL 
Sbjct: 94  PISPSLLMVDLGARLSHPVASNSPI-ALQHLFEVMRYIFEVASGFSINLSKSELLGINLD 153

Query: 228 LEIVASLASDFGCEVVSWPTTYVGLLLHGKPFTISFGILLLRRLR 272
             IV SLA  FGC++  WP+TY+ LLL G   + +F   ++  +R
Sbjct: 154 ASIVDSLACSFGCKLGLWPSTYLSLLLGGNSTSSAFWQPIVEHIR 197

[Close]

BLAST of Lag0039366 vs. NCBI nr
Match: RVW40781.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-05
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0


Query: 106 KRQIIDA---------SNSFWGGGGVVIKLDIEKAFNMPSTWLIGNFSEDILVAKGFVTS 165
           +RQI+DA         S     G G+V KLDIEKA++  + W    F   +L   GF   
Sbjct: 428 RRQILDAVLVANKAIDSRKRSAGAGLVCKLDIEKAYDHVN-W---KFLLSVLEKMGFGPK 487

Query: 166 GEDGSWVVFHWPITPLSSMVNLGLVNVTILFSSPVKG---------LLTSFFSTIHAFKE 225
               SW++F+     ++ +VN         + S  +G         L+   FS++ +  E
Sbjct: 488 WR--SWILFYISTVRMAILVNGTPTEFFSTYRSLRQGDPLSPYLFVLIMEAFSSLISKAE 547

Query: 226 ASGLHINHKMFEFIGINLPLEIVASLASDFGCEVVSWPTTYVGLLL 254
             GL IN K  E I +   +E V   A+ FGC+V ++PTTY+GL L
Sbjct: 548 EKGLKINLKKSEIIPVG-GVEDVDRAAAVFGCKVGNFPTTYLGLPL 586

[Close]

BLAST of Lag0039366 vs. NCBI nr
Match: CAD1844395.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-04
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 182 NVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCEV 241
           +V I F   +K   T+    + AF + SGL+IN+     I INLP ++ +SLA+ FGC V
Sbjct: 735 DVLIFFDGSIKS-ATTIMVILQAFSKCSGLNINYMKSALIPINLPTDLASSLATIFGCPV 794

Query: 242 VSWPTTYVGLLLHGKPFTISFGILLLRRL 271
             +P  Y+GL L  K    S  I L+ +L
Sbjct: 795 HGFPLNYLGLPLSQKKLLKSDYIPLIEKL 822

[Close]

BLAST of Lag0039366 vs. NCBI nr
Match: CAN82685.1 (hypothetical protein VITISV_000485 [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-04
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 184 TILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCEVVS 243
           TI FS      L +    +  F + S L IN +     GIN   E+++SLAS F C V  
Sbjct: 633 TIFFSKASLEHLQNLKIILLVFGQVSSLKINLEKSTISGINTKQELLSSLASVFDCRVSE 692

Query: 244 WPTTYVGLLLHGKPFTISFGILLLRRL 271
           WP +Y+GL L G P TI F  L++ R+
Sbjct: 693 WPLSYLGLPLGGNPKTIGFWDLVVERI 719

[Close]

BLAST of Lag0039366 vs. ExPASy TrEMBL
Match: A0A5E4FWN6 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035884 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 56/202 (27.72%), Postives = 87/202 (43.07%), Query Frame = 0


Query: 101 AMGSF--KRQIIDA---SNSF------WGGGGVVIKLDIEKAFNMPSTWLIGNFSEDILV 160
           + G+F  KRQI+DA   +N            G+V K+D EKA++    W   NF +D+L 
Sbjct: 196 SQGAFVQKRQILDAVLVANEVVEEVRKQNRKGLVFKIDFEKAYDHVE-W---NFVDDVLA 255

Query: 161 AKGF-------VTSGEDGSWVVFHWPITPLSSMV----------------------NLGL 220
            KGF       +  G+  S  +F      LS ++                      +L  
Sbjct: 256 RKGFGFRASRGLRQGDPLSPFLFTLVSDVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQF 315

Query: 221 VNVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCE 263
            + TI F    +    +    +  F + SG+ IN      +GIN  +E + ++A  +GCE
Sbjct: 316 ADDTIFFLDGKEEYWLNLLQMLKLFCDVSGMKINKAKSCILGINFSIETLNNMAGSWGCE 375

[Close]

BLAST of Lag0039366 vs. ExPASy TrEMBL
Match: A5AY60 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000485 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-05
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 184 TILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCEVVS 243
           TI FS      L +    +  F + S L IN +     GIN   E+++SLAS F C V  
Sbjct: 633 TIFFSKASLEHLQNLKIILLVFGQVSSLKINLEKSTISGINTKQELLSSLASVFDCRVSE 692

Query: 244 WPTTYVGLLLHGKPFTISFGILLLRRL 271
           WP +Y+GL L G P TI F  L++ R+
Sbjct: 693 WPLSYLGLPLGGNPKTIGFWDLVVERI 719

[Close]

BLAST of Lag0039366 vs. ExPASy TrEMBL
Match: A5BQI4 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030910 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-05
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 184 TILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCEVVS 243
           TI FS      L +    +  F + SGL IN +     GIN   E+++SLAS F C V  
Sbjct: 347 TIFFSKASMEHLQNLKIILLVFXQVSGLKINLEKSTISGINTRQELLSSLASVFDCRVSE 406

Query: 244 WPTTYVGLLLHGKPFTISFGILLLRRL 271
           WP +Y+GL L G P TI F   ++ R+
Sbjct: 407 WPLSYLGLPLGGNPKTIGFWDPVVERI 433

[Close]

BLAST of Lag0039366 vs. ExPASy TrEMBL
Match: M5WZA0 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020022mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-05
Identity = 54/220 (24.55%), Postives = 84/220 (38.18%), Query Frame = 0


Query: 101 AMGSF--KRQIIDASNSFWGGGGVVIKLDIEKAFNMPSTWLIGNFSEDILVAKGF----- 160
           + G+F  KRQI+DA        G+V K+D EKA++    W   NF +D+L  KGF     
Sbjct: 687 SQGAFVQKRQILDAVKK----KGLVFKIDFEKAYDHVE-W---NFVDDVLARKGFGVKWR 746

Query: 161 -----------------------------VTSGEDGSWVVFHWPITPLSSMV-------- 220
                                        +  G+  S  +F      LS ++        
Sbjct: 747 GWIIGCLESVNFSIMINGKPRGKFRASRGLRQGDPLSLFLFTLVSDVLSRIIERAQDVNL 806

Query: 221 --------------NLGLVNVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIG 263
                         +L   + TI      +    +    +  F + SG+ IN      +G
Sbjct: 807 VHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCDVSGMKINKAKSCILG 866

[Close]

BLAST of Lag0039366 vs. ExPASy TrEMBL
Match: A0A6V7QNP6 (Reverse transcriptase domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS27606 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-05
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 182 NVTILFSSPVKGLLTSFFSTIHAFKEASGLHINHKMFEFIGINLPLEIVASLASDFGCEV 241
           +V I F   +K   T+    + AF + SGL+IN+     I INLP ++ +SLA+ FGC V
Sbjct: 735 DVLIFFDGSIKS-ATTIMVILQAFSKCSGLNINYMKSALIPINLPTDLASSLATIFGCPV 794

Query: 242 VSWPTTYVGLLLHGKPFTISFGILLLRRL 271
             +P  Y+GL L  K    S  I L+ +L
Sbjct: 795 HGFPLNYLGLPLSQKKLLKSDYIPLIEKL 822

The following BLAST results are available for this feature:

BLAST of Lag0039366 vs. NCBI nr


Match Name	E-value	Identity	Description
VVA31869.1	2.4e-06	27.72	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
XP_004146266.1	7.0e-06	38.10	uncharacterized protein LOC101206158 [Cucumis sativus]	[more]
RVW40781.1	7.8e-05	31.93	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
CAD1844395.1	1.7e-04	38.20	unnamed protein product [Ananas comosus var. bracteatus]	[more]
CAN82685.1	1.7e-04	39.08	hypothetical protein VITISV_000485 [Vitis vinifera]	[more]

BLAST of Lag0039366 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0039366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5E4FWN6	1.2e-06	27.72	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]
A5AY60	8.4e-05	39.08	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A5BQI4	8.4e-05	39.08	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
M5WZA0	8.4e-05	24.55	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A6V7QNP6	8.4e-05	38.20	Reverse transcriptase domain-containing protein OS=Ananas comosus var. bracteatu...	[more]

BLAST of Lag0039366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039366.1	Lag0039366.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity