Lag0039362 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039362
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPhloem filament protein
Locationchr2: 42161944 .. 42162357 (+)
RNA-Seq ExpressionLag0039362
SyntenyLag0039362
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAGCATTGGAGGGGGATTTGGCATCAACTTGGGTGGTTGGGTTGATCCCTTCCTTGGCCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCGACATCCTCCGAGTCCCGAACTTCCTTCTTATGGCAAATGGATAGAAATCTCTGTCCACGAACAAGAGGTGAAAGAAGTTGCAAGGTTTGCGGTGGCAGAGTACAATCGCATAAACGATGACTGTTTGAAATACAAGTCCACATCTGCAGCTTGGTATATGGCTTTGGATGAGAAGAGCAAACAGTTCCGCCTCATTCTTCAAGTGGAAGACTGTTTGGGACGTAGGCTCCACTATGAGGCTATTGTTCATGAAAACAGAGTTCATCATGAAAATGTCTGGACGCTTGAATCATTCAAGCGTGCATGA

mRNA sequence

ATGCGCAGCATTGGAGGGGGATTTGGCATCAACTTGGGTGGTTGGGTTGATCCCTTCCTTGGCCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCGACATCCTCCGAGTCCCGAACTTCCTTCTTATGGCAAATGGATAGAAATCTCTGTCCACGAACAAGAGGTGAAAGAAGTTGCAAGGTTTGCGGTGGCAGAGTACAATCGCATAAACGATGACTGTTTGAAATACAAGTCCACATCTGCAGCTTGGTATATGGCTTTGGATGAGAAGAGCAAACAGTTCCGCCTCATTCTTCAAGTGGAAGACTGTTTGGGACGTAGGCTCCACTATGAGGCTATTGTTCATGAAAACAGAGTTCATCATGAAAATGTCTGGACGCTTGAATCATTCAAGCGTGCATGA

Coding sequence (CDS)

ATGCGCAGCATTGGAGGGGGATTTGGCATCAACTTGGGTGGTTGGGTTGATCCCTTCCTTGGCCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCGACATCCTCCGAGTCCCGAACTTCCTTCTTATGGCAAATGGATAGAAATCTCTGTCCACGAACAAGAGGTGAAAGAAGTTGCAAGGTTTGCGGTGGCAGAGTACAATCGCATAAACGATGACTGTTTGAAATACAAGTCCACATCTGCAGCTTGGTATATGGCTTTGGATGAGAAGAGCAAACAGTTCCGCCTCATTCTTCAAGTGGAAGACTGTTTGGGACGTAGGCTCCACTATGAGGCTATTGTTCATGAAAACAGAGTTCATCATGAAAATGTCTGGACGCTTGAATCATTCAAGCGTGCATGA

Protein sequence

MRSIGGGFGINLGGWVDPFLGHGHGHGHGHGHGHGRHPPSPELPSYGKWIEISVHEQEVKEVARFAVAEYNRINDDCLKYKSTSAAWYMALDEKSKQFRLILQVEDCLGRRLHYEAIVHENRVHHENVWTLESFKRA
Homology
BLAST of Lag0039362 vs. NCBI nr
Match: KAG6588840.1 (hypothetical protein SDJN03_17405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 7.6e-09
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 0

Query: 33   GHGRHPPSPELPSYGKWIEIS-VHEQEVKEVARFAVAEYNRINDDCLKYKSTSAAWYMAL 92
            GH   P  P  P   KWI+IS +    V+EV++FA+ ++N  + D LKY      WYM +
Sbjct: 901  GHCVGPVDP--PKVEKWIKISNLQFSFVQEVSKFALDDFNVKSGDSLKYDGVYDGWYMEM 960

Query: 93   DEKSKQFRLILQVEDCLGRRLHYEAIVHENRVHHENVWTLESFK 136
             + + +FR+ L+ +DCLGR  HYEA V+  +   + +  +ESFK
Sbjct: 961  GQDNTKFRIHLKAKDCLGRVHHYEAYVYVKQFLSKRIKIVESFK 1002

BLAST of Lag0039362 vs. NCBI nr
Match: XP_023522970.1 (uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-09
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 48  KWIEI-SVHEQEVKEVARFAVAEYNRINDDCLKYKSTSAAWYMALDEKSKQFRLILQVED 107
           KWI+I  V E  V+ +A+FAV +YN I+ +  KYKS    W+M L  +   F L ++V+D
Sbjct: 27  KWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKYKSIKCGWFMELKGEDLAFHLHIEVKD 86

Query: 108 CLGRRLHYEAIVHENRVHHENVWTLESFK 136
           CLGR    + +V E +   E V  LES K
Sbjct: 87  CLGRIFELDVVVSEKKACGEKVRKLESAK 115

BLAST of Lag0039362 vs. NCBI nr
Match: XP_038887075.1 (uncharacterized protein LOC120077251 [Benincasa hispida] >XP_038887076.1 uncharacterized protein LOC120077253 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-09
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 49  WIEI-SVHEQEVKEVARFAVAEYNRINDDCLKYKSTSAAWYMALD-EKSKQFRLILQVED 108
           WIEI +V E  V+EVA+FAVAEYN+  DD L Y  T+  WY  ++ E    F L ++ +D
Sbjct: 130 WIEIPNVEESCVQEVAKFAVAEYNKQADDNLVYICTTQGWYQEVNAEYGLLFDLRIKTKD 189

Query: 109 CLGRRLHYEAIVHENRVHHENVWTLESFK 136
           C GR   Y+A+V E+R  +E +  L SFK
Sbjct: 190 CFGRVREYKALVSEDRQPNEKIRILISFK 218

BLAST of Lag0039362 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 48  KWIEI-SVHEQEVKEVARFAVAEYNRINDDCLKYKSTSAAWYMALDEKSKQFRLILQVED 107
           KWI+I  V E  V+ +A+FAV +YN ++ +  KYKS    W+M L  +   +RL ++V+D
Sbjct: 27  KWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIEVKD 86

Query: 108 CLGRRLHYEAIVHENRVHHENVWTLESFK 136
           CLGR      +V E +   E +  LES K
Sbjct: 87  CLGRIFELNVVVSEKKTCAEKIRKLESAK 115

BLAST of Lag0039362 vs. NCBI nr
Match: KAG6588755.1 (hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 48  KWIEI-SVHEQEVKEVARFAVAEYNRINDDCLKYKSTSAAWYMALDEKSKQFRLILQVED 107
           KWI+I  V E  V+ +A+FAV +YN I+ +  KY+S    W+M L  +   FRL + V+D
Sbjct: 27  KWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKYQSIKCGWFMELKGEDLAFRLHIVVKD 86

Query: 108 CLGRRLHYEAIVHENRVHHENVWTLESFK 136
           CLGR    + +V E +   E V  LES K
Sbjct: 87  CLGRIFELDVVVSEKKTCAEKVRKLESAK 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6588840.17.6e-0938.46hypothetical protein SDJN03_17405, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023522970.19.9e-0941.57uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo][more]
XP_038887075.19.9e-0946.07uncharacterized protein LOC120077251 [Benincasa hispida] >XP_038887076.1 unchara... [more]
KAG6588758.11.7e-0839.33hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588755.12.2e-0841.57hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 59..134
e-value: 1.7E-19
score: 69.6
NoneNo IPR availableGENE3D3.10.450.10coord: 43..137
e-value: 6.6E-14
score: 53.9
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 47..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039362.1Lag0039362.1mRNA