Lag0039357 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039357
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA-binding protein 24 isoform X1
Location	chr2: 42032243 .. 42034508 (+)
RNA-Seq Expression	Lag0039357
Synteny	Lag0039357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCAGCTAACTTGGCAGGCCAGTTCGGCGACACCACTTACACCAAGGTCTTCGTCGGCGGCTTGGCTTGGGAGACCCACAAAGACACCATGAAGAAATACTTCGAACAGTTCGGCGACATCTTGGAAGCCGTAGTTATTACCGACAAGGCCACCGGTCGATCCAAGGGCTATGGATTTGTACGTCTCTTTCTTTCTTTCTTCTCTCTCCAGATCAATGGGATTTCATTTCCTTCTCGTTTTTCAGGTCACTTTCCGGGAACCGGAGGCCGCCATGAGGGCTTGCGTCGATGCTGCTCCGGTCATCGACGGCCGGAGAGCCAACTGCAATCTCGCTTCTCTCGGCGTTCAGAGATCTAAACCCTCCACGCCCAAACACGGTATTAACTAACTCAGATCTGCCAAATATATTTGATTAATAGGGAAAACCCATGAAATATATATTTGATCCTTTTTTTTTTGTAATTTTGAATTGTTGGGTTTGTGGGAAGTAAAGTTTAGATGATGTCGTGTTTGATTTTGTGTGTTTGATGTTTGGAAATGATTTTTTGTTAAAGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGGATCCCTTACAATCTCTATGGGTAAGTTTTTCTTTTTTACTTTCTTAATATAATGTCTCTGTATATCATCATAACATAAGATGTTATGTTATATATATATATATTTTCTCTCTCTAGAACGTGCCTTGCCAACTCATCCCTTCACTTTACTTTATTACAAACAATAAAGCTTTCCCTTCTTAATCACTCTAAGAAGACTCGTTTTCATCTCATGTATTAAACTCGATCGCTTCTTGTTTTAATTTACTGCATGCATGCATTGCACGTATCTCTACTCATTAATTAAATTTCTTGTTAATTAATTTGTTATTGTTGCTGTTCTTTTAGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGGTTTGTACAAACTTCTCTCATTCTCTGTTTGAATTTCTTTCATCATTCATCATTATTAGGAGAAAAAAGAAAAAGGGTTTTGACCAAGAATGATGGTAAAATTCTCTAATATTCCTTGCTGTGTAGAGGAGGAGTAGGCTATATTTGGAAGTGAATTGAAATAAAAGAATCTGGACATTGTCTGGTCAAACTGTTGAAAAGTGAAAGTTAAGAAAACCCAATCTGGTGTTCCTTCTCTTGTCGTTTTATCCGACAGTTTTTGTTTCTAACATTTAATATTGCAACAGTAAATCACTTTGTTACAGTTTTTGTTATTACACGTTCTTTCATGCACGTAATCATGAAAATGCCGACCACTTTCGAATATAATTTTTCTGAACAAAAACACATCTCTGATTCAGAATGCGACATCTTCAAGCAAACCTTATTGTAAAATAAAAATGATGTTTATACGTTGGTTTTTTAATTTGTAGCAGAGCTACTACAATGTGTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACCGGACCCGGCGGCATAATGAGCGGTGCGGCGGCTGCTGCGGCGGCGTTCTACCCGTATTTCCAATTCGGAGAAGGAAGCGGCGGAGGAGCTAACGGCTTCACTGCCGGCTCCGGGCAGCAGGGGTATGGGGTTCAGTACCCGCACCATCTATTTCAGTACTCCGCCGCCATTAATTCAACTGCAACGACGTTCCCTCAGCACTATGCTGGTCCTCCCATGTCTCTGCCTCCCACGCCTCCCACTTTGCCATCAGGTTTGTGCTTTTTTTACTTGTCTCGTTATAAATGATTATAAATTATACTTGATTTCTTACACTAGATTATGAACAAAACTTGCCTGCATACCGGTAATTAGAGATCTTCTTACATACTCCATTAAAATCTTGACAAATTAGAAAGAGGAAAGGAGAAAATGAAAATTTTTTGTTATCCCTCTTAGTTGTCAACGTTTTAATGGTGGTATGCAGGGAGATCCCTACATACCGGTACGCAGAATTGAACGTATTTAAAGAGATAATTAATGTATTGAGGTGATTGTGATTGTGTCATGGGAGTGTGAAAGACGTACTAATATCTTTGACAGTGTTTTTTGCTGTCCCACAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAA

mRNA sequence

ATGACTCCAGCTAACTTGGCAGGCCAGTTCGGCGACACCACTTACACCAAGGTCTTCGTCGGCGGCTTGGCTTGGGAGACCCACAAAGACACCATGAAGAAATACTTCGAACAGTTCGGCGACATCTTGGAAGCCGTAGTTATTACCGACAAGGCCACCGGTCGATCCAAGGGCTATGGATTTGTCACTTTCCGGGAACCGGAGGCCGCCATGAGGGCTTGCGTCGATGCTGCTCCGGTCATCGACGGCCGGAGAGCCAACTGCAATCTCGCTTCTCTCGGCGTTCAGAGATCTAAACCCTCCACGCCCAAACACGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTACTACAATGTGTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACCGGACCCGGCGGCATAATGAGCGGTGCGGCGGCTGCTGCGGCGGCGTTCTACCCGTATTTCCAATTCGGAGAAGGAAGCGGCGGAGGAGCTAACGGCTTCACTGCCGGCTCCGGGCAGCAGGGGTATGGGGTTCAGTACCCGCACCATCTATTTCAGTACTCCGCCGCCATTAATTCAACTGCAACGACGTTCCCTCAGCACTATGCTGGTCCTCCCATGTCTCTGCCTCCCACGCCTCCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAA

Coding sequence (CDS)

ATGACTCCAGCTAACTTGGCAGGCCAGTTCGGCGACACCACTTACACCAAGGTCTTCGTCGGCGGCTTGGCTTGGGAGACCCACAAAGACACCATGAAGAAATACTTCGAACAGTTCGGCGACATCTTGGAAGCCGTAGTTATTACCGACAAGGCCACCGGTCGATCCAAGGGCTATGGATTTGTCACTTTCCGGGAACCGGAGGCCGCCATGAGGGCTTGCGTCGATGCTGCTCCGGTCATCGACGGCCGGAGAGCCAACTGCAATCTCGCTTCTCTCGGCGTTCAGAGATCTAAACCCTCCACGCCCAAACACGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTACTACAATGTGTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACCGGACCCGGCGGCATAATGAGCGGTGCGGCGGCTGCTGCGGCGGCGTTCTACCCGTATTTCCAATTCGGAGAAGGAAGCGGCGGAGGAGCTAACGGCTTCACTGCCGGCTCCGGGCAGCAGGGGTATGGGGTTCAGTACCCGCACCATCTATTTCAGTACTCCGCCGCCATTAATTCAACTGCAACGACGTTCCCTCAGCACTATGCTGGTCCTCCCATGTCTCTGCCTCCCACGCCTCCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAA

Protein sequence

MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR

Homology

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BLAST of Lag0039357 vs. NCBI nr
Match: XP_022930178.1 (RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-binding protein 38 isoform X1 [Cucurbita maxima])

HSP 1 Score: 547.0 bits (1408), Expect = 1.0e-151
Identity = 271/296 (91.55%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
             GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 --GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQG 240
           TSYYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQG
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           YGVQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 YGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Lag0039357 vs. NCBI nr
Match: XP_022157230.1 (RNA-binding protein 24 isoform X1 [Momordica charantia])

HSP 1 Score: 546.2 bits (1406), Expect = 1.7e-151
Identity = 278/298 (93.29%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPANLA QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
             GGGGGRNFRVLSSFQ+GFGGNVGSAFHS  TFPHYAVQQGIPYNLYGYSSYSPDYTYP
Sbjct: 121 --GGGGGRNFRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS-GGGANGFTAGSGQQ 240
           TSYYNVYGGATAQYPMYGTGPGGIM+GAAAAAAAFYPYFQFGEGS GGG NGFTAGSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQ 240

Query: 241 -GYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
            GYGVQYPHHLFQYSAAINS+AT+FPQHYA PPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 GGYGVQYPHHLFQYSAAINSSATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Lag0039357 vs. NCBI nr
Match: XP_023535742.1 (RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 543.9 bits (1400), Expect = 8.6e-151
Identity = 269/296 (90.88%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
               GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 ----GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQG 240
           TSYYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQG
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           YGVQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 YGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 285

[Close]

BLAST of Lag0039357 vs. NCBI nr
Match: KAG6592286.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 543.1 bits (1398), Expect = 1.5e-150
Identity = 269/296 (90.88%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
              GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 ---GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQG 240
           TSYYNVYGGATAQYPMY TGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQG
Sbjct: 181 TSYYNVYGGATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           YGVQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 YGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286

[Close]

BLAST of Lag0039357 vs. NCBI nr
Match: KAG7037185.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.4 bits (1391), Expect = 9.6e-150
Identity = 273/299 (91.30%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           M+PANL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL  GGGGGG
Sbjct: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120

Query: 121 GGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTY 180
           GGGGGGGGRNFRVLS FQ+GFGGNVGSAFHSTPTFPHYAV QGIPYNLYGYSSYSPDY Y
Sbjct: 121 GGGGGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNY 180

Query: 181 PTSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS--GGGANGFTAGSG 240
           PTSYYNVYGGATAQYPMY TGPGG+MSG    AAAFYPYFQFGEGS  GGGANGF+AGSG
Sbjct: 181 PTSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSAGSG 240

Query: 241 QQGYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           QQGYGVQYPHHLFQYSA INSTATTFPQHY GPPMSLPPTPPTLPSGVTMAL  PIPHR
Sbjct: 241 QQGYGVQYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 295

[Close]

BLAST of Lag0039357 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.6e-25
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 3   PANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFV 62
           P  + G   DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 21  PGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 80

Query: 63  TFREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
           T  +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 81  TMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 114

[Close]

BLAST of Lag0039357 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.6e-25
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 3   PANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFV 62
           P+ + G   DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 19  PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78

Query: 63  TFREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
           T  +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 79  TMADRAAADRACKDPNPIIDGRKANVNLAYLGAK 112

[Close]

BLAST of Lag0039357 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-24
Identity = 101/278 (36.33%), Postives = 131/278 (47.12%), Query Frame = 0


Query: 2   TPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T  N+ G FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGG 121
           VTF++ +AA RAC D+ P+I+GRRANCNLASLG +  K  T    ++           G 
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ-----------GP 122

Query: 122 GGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPT 181
             G       V +  Q  +     +  H           Q +P+  YGY S    Y  P 
Sbjct: 123 KNGNRATPPHVGNHSQWYYPSGFTNQQHQQQN------HQAVPF--YGYPS---AYVAPN 182

Query: 182 SYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGY 241
             +N   G      M G          +     +Y +  +    GGG     A S    +
Sbjct: 183 MTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMY----GGGRVMVGAASPMVPF 242

Query: 242 GVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPP 280
              YP+H         S A  FPQ     P+S   TPP
Sbjct: 243 YTVYPYH--------QSQAIGFPQPSFSKPLSF-STPP 245

[Close]

BLAST of Lag0039357 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
          DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Lag0039357 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
          DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Lag0039357 vs. ExPASy TrEMBL
Match: A0A6J1IGG9 (RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 4.9e-152
Identity = 271/296 (91.55%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
             GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 --GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQG 240
           TSYYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQG
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           YGVQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 YGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Lag0039357 vs. ExPASy TrEMBL
Match: A0A6J1EUB1 (RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 4.9e-152
Identity = 271/296 (91.55%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
             GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 --GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQG 240
           TSYYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQG
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           YGVQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 YGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Lag0039357 vs. ExPASy TrEMBL
Match: A0A6J1DSJ0 (RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 8.4e-152
Identity = 278/298 (93.29%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPANLA QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
             GGGGGRNFRVLSSFQ+GFGGNVGSAFHS  TFPHYAVQQGIPYNLYGYSSYSPDYTYP
Sbjct: 121 --GGGGGRNFRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS-GGGANGFTAGSGQQ 240
           TSYYNVYGGATAQYPMYGTGPGGIM+GAAAAAAAFYPYFQFGEGS GGG NGFTAGSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQ 240

Query: 241 -GYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
            GYGVQYPHHLFQYSAAINS+AT+FPQHYA PPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 GGYGVQYPHHLFQYSAAINSSATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Lag0039357 vs. ExPASy TrEMBL
Match: A0A6J1F1U2 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438889 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 5.3e-146
Identity = 268/297 (90.24%), Postives = 274/297 (92.26%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           M+PANL GQFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL   GGGGG
Sbjct: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWEL--AGGGGG 127

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
           GGGGGGGRNFRVLS FQ+GFGGNVGSAFHSTPTFP YAV QGIPYNLYGYSSYSPDY YP
Sbjct: 128 GGGGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 187

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS-GGGANGFTAGSGQQ 240
           TSYYNVYGGATAQYPMY TGPGG+MSG    AAAFYPYFQFGEGS GGGANGF+AGSGQQ
Sbjct: 188 TSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQ 247

Query: 241 GYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           GYG QYPHHLFQYSA INSTATT PQHY GPPMSLP TPPTLPSGVTMAL  PIPHR
Sbjct: 248 GYGGQYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 298

[Close]

BLAST of Lag0039357 vs. ExPASy TrEMBL
Match: A0A6J1ID05 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471971 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 6.9e-146
Identity = 266/298 (89.26%), Postives = 273/298 (91.61%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           M+PANL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL        
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWEL-------A 120

Query: 121 GGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYP 180
           GGGGGGGRNFRVLS FQ+GFGGNVGSAFHSTPTFPHYAV QGIPYNLYGYSSYSPD+TYP
Sbjct: 121 GGGGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYP 180

Query: 181 TSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS--GGGANGFTAGSGQ 240
           TSYYNVYGGATAQYP+Y TGPGG+MSG    AAAFYPYFQFGEGS  GGGANGF+ GSGQ
Sbjct: 181 TSYYNVYGGATAQYPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQ 240

Query: 241 QGYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 297
           QGYGVQYPHHLFQYSA INSTATTFPQHY GPPMSLPPTPPTLPSGVTMAL APIPHR
Sbjct: 241 QGYGVQYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 287

[Close]

BLAST of Lag0039357 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.1 bits (658), Expect = 8.8e-69
Identity = 160/282 (56.74%), Postives = 190/282 (67.38%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGGGGRNFR 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H                 G  GGR  +
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH-----------------GHVGGRGMK 122

Query: 132 VLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPY-NLYGYSSYSPDYTYPTSYYNVYGGA 191
           V S F+T F G   +A  S   F HY     +PY N +G+SSYS DY YPTSYYNVYGGA
Sbjct: 123 VTSPFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTSYYNVYGGA 182

Query: 192 TAQYPMYGTGPGGIMSGAAAA-AAAFYPYFQFGEGSGGGANGFTAGSGQQGYG-VQYPHH 251
           TAQ+PMYG+GP   M+G AAA AA FYPY QF EG+G             GY  + YP+H
Sbjct: 183 TAQHPMYGSGP---MTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNH 242

Query: 252 LFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALP 291
           +F YSA        +P H+ G P+SL P+ P +PS V  A+P
Sbjct: 243 MFHYSA----PGGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 242

[Close]

BLAST of Lag0039357 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-67
Identity = 160/283 (56.54%), Postives = 190/283 (67.14%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGGGGRNFR 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H                 G  GGR  +
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH-----------------GHVGGRGMK 122

Query: 132 VLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPY-NLYGYSSYSPDYTYPT-SYYNVYGG 191
           V S F+T F G   +A  S   F HY     +PY N +G+SSYS DY YPT SYYNVYGG
Sbjct: 123 VTSPFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGG 182

Query: 192 ATAQYPMYGTGPGGIMSGAAAA-AAAFYPYFQFGEGSGGGANGFTAGSGQQGYG-VQYPH 251
           ATAQ+PMYG+GP   M+G AAA AA FYPY QF EG+G             GY  + YP+
Sbjct: 183 ATAQHPMYGSGP---MTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPN 242

Query: 252 HLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALP 291
           H+F YSA        +P H+ G P+SL P+ P +PS V  A+P
Sbjct: 243 HMFHYSA----PGGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of Lag0039357 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.0 bits (580), Expect = 9.8e-60
Identity = 147/269 (54.65%), Postives = 168/269 (62.45%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGGGGRNF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H                GGGG   N 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH----------------GGGGRINNM 127

Query: 131 RV-LSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDY-TYPTSYYNVYG 190
           RV +S+ QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG
Sbjct: 128 RVMMSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYG 187

Query: 191 GAT-AQYPMYG--TGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGVQY 250
             +  QY +YG     GG ++ AAA+A  FYP        GGG  G      Q  Y    
Sbjct: 188 CTSGGQYGVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY---- 232

Query: 251 PHHLFQYSAAINSTATTFPQHYAGPPMSL 275
            HHL  Y+          P HY+ P  S+
Sbjct: 248 -HHLSSYN----------PHHYSPPTFSM 232

[Close]

BLAST of Lag0039357 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-59
Identity = 151/284 (53.17%), Postives = 173/284 (60.92%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGGGGRNF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H                GGGG   N 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH----------------GGGGRINNM 127

Query: 131 RV-LSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDY-TYPTSYYNVYG 190
           RV +S+ QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG
Sbjct: 128 RVMMSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYG 187

Query: 191 GAT-AQYPMYG--TGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGVQY 250
             +  QY +YG     GG ++ AAA+A  FYP        GGG  G      Q  Y    
Sbjct: 188 CTSGGQYGVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY---- 247

Query: 251 PHHLFQYSAAINSTATTFPQHYAGPPMSL-------PPTPPTLP 283
            HHL  Y+          P HY+ P  S+       P  PP +P
Sbjct: 248 -HHLSSYN----------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of Lag0039357 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-58
Identity = 150/288 (52.08%), Postives = 173/288 (60.07%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGGGGRNF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H                GGGG   N 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH----------------GGGGRINNM 127

Query: 131 RV-LSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDY-TYPTSYYNVYG 190
           RV +S+ QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG
Sbjct: 128 RVMMSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYG 187

Query: 191 GAT-AQYPMYG--TGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGVQY 250
             +  QY +YG     GG ++ AAA+A  FYP        GGG  G      Q  Y    
Sbjct: 188 CTSGGQYGVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY---- 247

Query: 251 PHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPI 294
            HHL  Y+          P HY+ P  S+        S  T +   P+
Sbjct: 248 -HHLSSYN----------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

The following BLAST results are available for this feature:

BLAST of Lag0039357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930178.1	1.0e-151	91.55	RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-bindi...	[more]
XP_022157230.1	1.7e-151	93.29	RNA-binding protein 24 isoform X1 [Momordica charantia]	[more]
XP_023535742.1	8.6e-151	90.88	RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6592286.1	1.5e-150	90.88	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037185.1	9.6e-150	91.30	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0039357 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9H0Z9	7.6e-25	58.51	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	7.6e-25	58.51	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q9M1S3	1.3e-24	36.33	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	1.3e-24	63.53	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q5ZMA3	1.3e-24	63.53	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Lag0039357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IGG9	4.9e-152	91.55	RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EUB1	4.9e-152	91.55	RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]
A0A6J1DSJ0	8.4e-152	93.29	RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991...	[more]
A0A6J1F1U2	5.3e-146	90.24	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1ID05	6.9e-146	89.26	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Lag0039357 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.2	8.8e-69	56.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	2.2e-67	56.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	9.8e-60	54.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	2.2e-59	53.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	2.4e-58	52.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 6.9E-22 score: 88.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 1.3E-15 score: 57.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.687742
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..138 e-value: 8.9E-25 score: 89.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..124
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..291
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 4.40052E-41 score: 135.435
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..291
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039357.1	Lag0039357.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding