Lag0039344 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039344
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionethylene-responsive transcription factor ERF022-like
Locationchr2: 41819029 .. 41820288 (-)
RNA-Seq ExpressionLag0039344
SyntenyLag0039344
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAGCTCAACCGCGACTTCCCCGACGGGGTCTCGGAGCTAGCGGTTCGGTTTTGAAGCCCTTTCGAGGCGTGCGAAAGCGGAGTTGGGGCCGCTACGTCTCGGAGATACGGCTTCCGGGGAAGAAAATGCGTGTGTGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCAGCACGCGCCTATGACTCAGCAGCGGCATTTTTGAGAGGCAGCTCGGCTGTGCTCAACTTTCCTGACTCTGTGGGATCGCTTCCACGGCCAGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCAGCAAAGGCTGCGGCGCAAATGAGGGAGATGGAGGGCGGAGAGCGGTGGACGAGTGGCGGATGGAGTCTGGCGGAGAAGACGGAGTTTGAGCAGGTGAAGGAAGCTCCATTGTTGAGTCCATTGAGGTTGGGGTCGCTGGGTTTTGGACCAACCTCAGATGAAGACATTTTATTGTTACCTGCCTATTTCTAAATTGCTAACGGTAGATTGTGAGCGACAAATTGCTTAAATAATTTGAGTGTTATTAAGTTGAGAATCATTTGACGACGCTTTATTAATTGTATCCCTTTTGGGATGATTGTGAAGGAAGATTGATTGATTTAATTCAGTCTTAGAAAGGGAATAAATTGTTAACATATTAACTTTCTCTCCCCCATGTAAAATGTGATGCCTCAATTTTGAAAGATATGTCGATGGATATAACGATAAAATGGCGAGATTGATATTTCTTAAGAAATTATATTCATAAAAAAACATTGGACAAATTGCAAAAACCACCCTTAATAATGTTTTAACAATTACAACTCTTAAAGTTTCAAGTGCAAAAATTAACCCCTCCAACTTTCAAAAATGTAAAAATTAGAACCCTAAACTTTGAATGTTAAAACTAAACCCCCAATCTAATGTAAAATTTTGGTCCATCTCATATTTCTCGTCTCCCTCCTCTTTCCACTATCTTTTCTCCCTCTACCTCTCCATCCCTTCGATCAAAATCTTAACCTTCCAAGAAAATTTGGAAATTTCCATTAATGTGAGGTGGGTGAAAATGTTTCGGCATCGCAGCCAGCGGCTCCGACGCGATTGGCCTTGCCTCCAGAGGTTCACTTGGCTCGCCAACCAAATGATAACAAAATAAAGTCGTTGTCGGCGGATGTGTTCAGTGAGACTGGAAGCATCAATATGGATGAGTCATCAGAAATTGAAGAACAGAACGAAACGCTATTGATGATCCCACATTGA

mRNA sequence

ATGACTCAAGCTCAACCGCGACTTCCCCGACGGGGTCTCGGAGCTAGCGGTTCGGTTTTGAAGCCCTTTCGAGGCGTGCGAAAGCGGAGTTGGGGCCGCTACGTCTCGGAGATACGGCTTCCGGGGAAGAAAATGCGTGTGTGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCAGCACGCGCCTATGACTCAGCAGCGGCATTTTTGAGAGGCAGCTCGGCTGTGCTCAACTTTCCTGACTCTGTGGGATCGCTTCCACGGCCAGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCAGCAAAGGCTGCGGCGCAAATGAGGGAGATGGAGGGCGGAGAGCGGTGGACGAGTGGCGGATGGAGTCTGGCGGAGAAGACGGAGTTTGAGCAGCCAGCGGCTCCGACGCGATTGGCCTTGCCTCCAGAGGTTCACTTGGCTCGCCAACCAAATGATAACAAAATAAAGTCGTTGTCGGCGGATGTGTTCAGTGAGACTGGAAGCATCAATATGGATGAGTCATCAGAAATTGAAGAACAGAACGAAACGCTATTGATGATCCCACATTGA

Coding sequence (CDS)

ATGACTCAAGCTCAACCGCGACTTCCCCGACGGGGTCTCGGAGCTAGCGGTTCGGTTTTGAAGCCCTTTCGAGGCGTGCGAAAGCGGAGTTGGGGCCGCTACGTCTCGGAGATACGGCTTCCGGGGAAGAAAATGCGTGTGTGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCAGCACGCGCCTATGACTCAGCAGCGGCATTTTTGAGAGGCAGCTCGGCTGTGCTCAACTTTCCTGACTCTGTGGGATCGCTTCCACGGCCAGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCAGCAAAGGCTGCGGCGCAAATGAGGGAGATGGAGGGCGGAGAGCGGTGGACGAGTGGCGGATGGAGTCTGGCGGAGAAGACGGAGTTTGAGCAGCCAGCGGCTCCGACGCGATTGGCCTTGCCTCCAGAGGTTCACTTGGCTCGCCAACCAAATGATAACAAAATAAAGTCGTTGTCGGCGGATGTGTTCAGTGAGACTGGAAGCATCAATATGGATGAGTCATCAGAAATTGAAGAACAGAACGAAACGCTATTGATGATCCCACATTGA

Protein sequence

MTQAQPRLPRRGLGASGSVLKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAARAYDSAAAFLRGSSAVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMREMEGGERWTSGGWSLAEKTEFEQPAAPTRLALPPEVHLARQPNDNKIKSLSADVFSETGSINMDESSEIEEQNETLLMIPH
Homology
[Close]
BLAST of Lag0039344 vs. NCBI nr
Match: XP_038889152.1 (ethylene-responsive transcription factor ERF022-like [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-47
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0 

Query: 1   MTQAQPRLPRRGLGASGSVLKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR 60
           MTQAQP    R LG + S+ KPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR
Sbjct: 25  MTQAQP----RRLGTNDSISKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR 84

Query: 61  AYDSAAAFLRGSSAVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMREMEGGERWT-SG 120
           AYDSAAAFLRG+SAVLNFPDSVGSLP+PESCSREHIQSAAAKAAAQMR+ME GE+ T SG
Sbjct: 85  AYDSAAAFLRGTSAVLNFPDSVGSLPQPESCSREHIQSAAAKAAAQMRDMEDGEQGTSSG 144

Query: 121 GWS--LAEKTEFEQPAAPTRLAL 141
            WS    E+ +     +P RL L
Sbjct: 145 SWSPRTFEQVKEAPLLSPLRLGL 163

[Close]
BLAST of Lag0039344 vs. NCBI nr
Match: XP_023536389.1 (ethylene-responsive transcription factor ERF022-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 6.3e-46
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = 0 

Query: 1   MTQAQPRLPRRGLGASGSVLKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR 60
           MT+ QP+L  R LG++ SV  PFRGVRKRSWGRYVSEIRLPGKK RVWLGSFASPEMAAR
Sbjct: 1   MTKTQPQLIERRLGSNVSVSSPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAAR 60

Query: 61  AYDSAAAFLRGSSAVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMREMEGGERWTSGG 120
           AYDSAA FLRG+SA+LNFPDSVGSLP+PESCSREHIQSAAAKAAAQMREME GER  S G
Sbjct: 61  AYDSAAVFLRGTSALLNFPDSVGSLPQPESCSREHIQSAAAKAAAQMREMEVGERRVSNG 120

Query: 121 WSLAEKTEFEQP--AAPTRLA 140
            S     E ++    +P RLA
Sbjct: 121 LSRTMFEEMKEAPLLSPLRLA 141

[Close]
BLAST of Lag0039344 vs. NCBI nr
Match: KAG6592285.1 (Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 6.3e-46
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = 0 

Query: 1   MTQAQPRLPRRGLGASGSVLKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR 60
           MT+ QP+L  R LG++ SV  PFRGVRKRSWGRYVSEIRLPGKK RVWLGSFASPEMAAR
Sbjct: 1   MTKTQPQLIERRLGSNVSVSSPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAAR 60

Query: 61  AYDSAAAFLRGSSAVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMREMEGGERWTSGG 120
           AYDSAA FLRG+SA+LNFPDSVGSLP+PESCSREHIQSAAAKAAAQMREME GER  S G
Sbjct: 61  AYDSAAVFLRGTSALLNFPDSVGSLPQPESCSREHIQSAAAKAAAQMREMEVGERKASNG 120

Query: 121 WSLAEKTEFEQP--AAPTRLA 140
            S     E ++    +P RLA
Sbjct: 121 LSRTMFEEMKEAPLLSPLRLA 141

[Close]
BLAST of Lag0039344 vs. NCBI nr
Match: XP_022930134.1 (ethylene-responsive transcription factor ERF022-like [Cucurbita moschata])

HSP 1 Score: 194.5 bits (493), Expect = 8.2e-46
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 0 

Query: 1   MTQAQPRLPRRGLGASGSVLKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR 60
           MT+ QP+L  R LG++ SV  PFRGVRKRSWGRYVSEIRLPGKK RVWLGSFASPEMAAR
Sbjct: 1   MTKTQPQLIERRLGSNVSVSSPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAAR 60

Query: 61  AYDSAAAFLRGSSAVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMREMEGGERWTSGG 120
           AYDSAA FLRG+SA+LNFPDS+GSLP+PESCSREHIQSAAAKAAAQMREME GER  S G
Sbjct: 61  AYDSAAVFLRGTSALLNFPDSIGSLPQPESCSREHIQSAAAKAAAQMREMEVGERKASNG 120

Query: 121 WSLAEKTEFEQP--AAPTRLA 140
            S     E ++    +P RLA
Sbjct: 121 LSRTMFEEMKEAPLLSPLRLA 141

[Close]
BLAST of Lag0039344 vs. NCBI nr
Match: KAG7025123.1 (Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-45
Identity = 105/141 (74.47%), Postives = 115/141 (81.56%), Query Frame = 0 

Query: 1   MTQAQPRLPRRGLGASGSVLKPFRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAAR 60
           MT+ QP+L  R  G++ SV  PFRGVRKRSWGRYVSEIRLPGKK RVWLGSFASPEMAAR
Sbjct: 1   MTKTQPQLIERRFGSNVSVSSPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAAR 60

Query: 61  AYDSAAAFLRGSSAVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMREMEGGERWTSGG 120
           AYDSAA FLRG+SA+LNFPDSVGSLP+PESCSREHIQSAAAKAAAQMREME GER  S G
Sbjct: 61  AYDSAAVFLRGTSALLNFPDSVGSLPQPESCSREHIQSAAAKAAAQMREMEVGERKASNG 120

Query: 121 WSLAEKTEFEQP--AAPTRLA 140
            S     E ++    +P RLA
Sbjct: 121 LSRTMFEEMKEAPLLSPLRLA 141

[Close]
BLAST of Lag0039344 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-23
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 23  FRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAARAYDSAAAFLRGSSAVLNFPDSV 82
           +RGVRKR+WG++VSEIR P KK R+WLG+F SPEMAARA+D AA  ++G+SA+LNFPD  
Sbjct: 36  YRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLA 95

Query: 83  GSLPRPESCSREHIQSAAAKAA 105
           GS PRP S S   IQ AA KAA
Sbjct: 96  GSFPRPSSLSPRDIQVAALKAA 117

[Close]
BLAST of Lag0039344 vs. ExPASy Swiss-Prot
Match: Q9LQ28 (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 GN=ERF022 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 0 

Query: 23  FRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAARAYDSAAAFLRGSSAVLNFPDSV 82
           +RG+R+R WG++VSEIR PGKK R+WLGS+ + EMAA AYD+AA  LRG    LNFP+ V
Sbjct: 20  YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELV 79

Query: 83  GSLPRPESCSREHIQSAAAKAAAQMR 109
            S PRPES S EHIQ+AA  AA   +
Sbjct: 80  DSFPRPESSSSEHIQAAAQDAALMFK 105

[Close]
BLAST of Lag0039344 vs. ExPASy Swiss-Prot
Match: Q1ECI2 (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 GN=ERF023 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-21
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 0 

Query: 23  FRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAARAYDSAAAFLRGSSAVLNFPDSV 82
           + GVRKR WG++VSEIR P KK R+WLGSF  PEMAA+AYD AA  L+G  A LNFP+ +
Sbjct: 45  YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query: 83  GSLPRPESCSREHIQSAAAKAAAQMREMEGGERWTSG 120
             LPRP +C+   IQ AAAKAA  ++ ++ G+   +G
Sbjct: 105 EDLPRPSTCTPRDIQVAAAKAANAVKIIKMGDDDVAG 141

[Close]
BLAST of Lag0039344 vs. ExPASy Swiss-Prot
Match: Q9LU18 (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 GN=ERF036 PE=2 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-21
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 15  ASGSVLKP-FRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAARAYDSAAAFLRGSS 74
           +S S+  P +RGVR RSWG++VSEIR P KK R+WLG+F + +MAARA+D AA  ++GSS
Sbjct: 52  SSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSS 111

Query: 75  AVLNFPDSVGSLPRPESCSREHIQSAAAKAAAQMRE 110
           AVLNFP+     PRP S S   IQ+AAA+AAA + E
Sbjct: 112 AVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVE 147

[Close]
BLAST of Lag0039344 vs. ExPASy Swiss-Prot
Match: Q9M210 (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana OX=3702 GN=ERF035 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 23  FRGVRKRSWGRYVSEIRLPGKKMRVWLGSFASPEMAARAYDSAAAFLRGSSAVLNFPDSV 82
           +RGVR RSWG++VSEIR P KK R+WLG++ + EMAARA+D AA  ++G+S  LNFP+  
Sbjct: 71  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELS 130

Query: 83  GSLPRPESCSREHIQSAAAKAA 105
           G LPRP SCS + IQ+AA KAA
Sbjct: 131 GLLPRPVSCSPKDIQAAATKAA 152

The following BLAST results are available for this feature:
BLAST of Lag0039344 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038889152.14.4e-4776.92ethylene-responsive transcription factor ERF022-like [Benincasa hispida][more]
XP_023536389.16.3e-4675.18ethylene-responsive transcription factor ERF022-like [Cucurbita pepo subsp. pepo... [more]
KAG6592285.16.3e-4675.18Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma s... [more]
XP_022930134.18.2e-4674.47ethylene-responsive transcription factor ERF022-like [Cucurbita moschata][more]
KAG7025123.11.8e-4574.47Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma s... [more]
BLAST of Lag0039344 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q391273.5e-2365.85Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LQ281.7e-2260.47Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 ... [more]
Q1ECI22.5e-2154.64Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9LU182.5e-2157.29Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9M2107.3e-2160.98Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana OX=3702 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 23..34
score: 57.42
coord: 61..81
score: 56.71
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 22..85
e-value: 1.3E-32
score: 124.4
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 23..71
e-value: 1.9E-10
score: 40.8
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 22..79
score: 20.810766
IPR001471AP2/ERF domainCDDcd00018AP2coord: 23..81
e-value: 1.6505E-18
score: 73.4599
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 22..80
e-value: 3.5E-23
score: 83.5
NoneNo IPR availablePANTHERPTHR31985:SF215ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKEcoord: 18..145
NoneNo IPR availablePANTHERPTHR31985ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATEDcoord: 18..145
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 23..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039344.1Lag0039344.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity