Lag0039340 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039340
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein MNN4-like
Location	chr2: 41670072 .. 41670383 (+)
RNA-Seq Expression	Lag0039340
Synteny	Lag0039340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGTGGACTGGAGTCCAGAAGCCATTAATGATTTGTTTAATCTCCAGGATTTTCCGCATGCAGTCTTTAATGAGATGATGGTTGCACCATCTAGGGACCAACTGAATGCGGCTGTCCAAGAGGTTGGCATTGAGGGGGCCCAGTGGAGGTTGTCGAAGACGGAGAAGCGCACGTTTCAGGCTGCTTATTTGAAAAGAGAGGCCAACACCTGGATGGGTTTCATTAGGCTGCGCTTACTGCCGACAACTCACGACTCCACAATATCTCGGGACCGGTATTGTCTGCCTTTGCTATTCTTCACTCGATGA

mRNA sequence

ATGCCCGTGGACTGGAGTCCAGAAGCCATTAATGATTTGTTTAATCTCCAGGATTTTCCGCATGCAGTCTTTAATGAGATGATGGTTGCACCATCTAGGGACCAACTGAATGCGGCTGTCCAAGAGGTTGGCATTGAGGGGGCCCAGTGGAGGTTGTCGAAGACGGAGAAGCGCACGTTTCAGGCTGCTTATTTGAAAAGAGAGGCCAACACCTGGATGGGTTTCATTAGGCTGCGCTTACTGCCGACAACTCACGACTCCACAATATCTCGGGACCGGTATTGTCTGCCTTTGCTATTCTTCACTCGATGA

Coding sequence (CDS)

ATGCCCGTGGACTGGAGTCCAGAAGCCATTAATGATTTGTTTAATCTCCAGGATTTTCCGCATGCAGTCTTTAATGAGATGATGGTTGCACCATCTAGGGACCAACTGAATGCGGCTGTCCAAGAGGTTGGCATTGAGGGGGCCCAGTGGAGGTTGTCGAAGACGGAGAAGCGCACGTTTCAGGCTGCTTATTTGAAAAGAGAGGCCAACACCTGGATGGGTTTCATTAGGCTGCGCTTACTGCCGACAACTCACGACTCCACAATATCTCGGGACCGGTATTGTCTGCCTTTGCTATTCTTCACTCGATGA

Protein sequence

MPVDWSPEAINDLFNLQDFPHAVFNEMMVAPSRDQLNAAVQEVGIEGAQWRLSKTEKRTFQAAYLKREANTWMGFIRLRLLPTTHDSTISRDRYCLPLLFFTR

Homology

[Close]

BLAST of Lag0039340 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 32/98 (32.65%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 3   VDWSPEAINDLFNLQDFPHAVFNEMMVAPSRDQLNAAVQEVGIEGAQWRLSKTEKRTFQA 62
           V +S   IN+L+ ++D P A  N+++  P  +++  A++ +   G QW +S    +T  +
Sbjct: 238 VPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLAS 297

Query: 63  AYLKREANTWMGFIRLRLLPTTHDSTISRDR----YCL 97
           + L  EA  W+  ++ R++PT+HD T+SRDR    YC+
Sbjct: 298 SKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVMAAYCI 335

[Close]

BLAST of Lag0039340 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 9.1e-07
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 3   VDWSPEAINDLFNLQDFPHAVFNEMMVAPSRDQLNAAVQEVGIEGAQWRLSKTEKRTFQA 62
           V +S   IN+++ ++D P+A  N+++  P+  Q+  A+Q +   G +W +S     T  +
Sbjct: 299 VSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDALQVLMQLGMKWSVSLKGVSTLAS 358

Query: 63  AYLKREANTWMGFIRLRLLPTTHDSTISRDR----YCL 97
             L  E   W+  ++ RL+ TTHD T+SRDR    YC+
Sbjct: 359 KSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVMATYCI 396

[Close]

BLAST of Lag0039340 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 3   VDWSPEAINDLFNLQDFPHAVFNEMMVAPSRDQLNAAVQEVGIEGAQWRLSKTEKRTFQA 62
           V WS EAIN +F L D P    +E +   ++  L   ++ V   GA+W +S     T   
Sbjct: 109 VSWSEEAINAVFGLGD-PVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIR 168

Query: 63  AYLKREANTWMGFIRLRLLPTTHDSTISRDRYCL 97
           + L   A  W  F++ RLLPTTH  T+S+DR  L
Sbjct: 169 SALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLL 201

[Close]

BLAST of Lag0039340 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 3   VDWSPEAINDLFNLQDFPHAVFNEMMVAPSRDQLNAAVQEVGIEGAQWRLSKTEKRTFQA 62
           V WS EAIN +F L D P    +E +   +   L   ++ V + GA+W +S     T   
Sbjct: 100 VSWSEEAINAVFGLGD-PVDEHSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIR 159

Query: 63  AYLKREANTWMGFIRLRLLPTTHDSTISRDRYCL 97
           + L   A  W  F++  LLPTTH  T+S+DR  L
Sbjct: 160 SALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLL 192

[Close]

BLAST of Lag0039340 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 61.2 bits (147), Expect = 5.9e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 3   VDWSPEAINDLFNLQDFPHAVFNEMMVAPSRDQLNAAVQEVGIEGAQWRLSKTEKRTFQA 62
           V  S EAIN ++ L D P    +E + A +  +L   ++ V I GA+W +S     T   
Sbjct: 16  VPLSTEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETVAIAGAEWNVSSQGAYTCLR 75

Query: 63  AYLKREANTWMGFIRLRLLPTTHDSTISRDRYCL 97
           + L   A  W  F++ RLLPTTH  T+S++R  L
Sbjct: 76  SSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLL 108

The following BLAST results are available for this feature:

BLAST of Lag0039340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904385.1	2.2e-08	32.65	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
XP_038876674.1	9.1e-07	32.65	chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]	[more]
PON46472.1	2.0e-06	37.23	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	3.5e-06	36.17	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON62892.1	5.9e-06	36.17	hypothetical protein PanWU01x14_135680 [Parasponia andersonii]	[more]

BLAST of Lag0039340 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039340.1	Lag0039340.1	mRNA