Lag0039327 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039327
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cupin_3 domain-containing protein
Location	chr2: 41471281 .. 41474320 (-)
RNA-Seq Expression	Lag0039327
Synteny	Lag0039327

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGGAGTTATTTGGCGTGAAGCTCGAAAGAAATGTTCCACAGTCCAAACTCAACGACCTTGGTGTTTACACATGGCCCAAGTATGTCTCTAAACCCTTCGGCTATATCTTTGTAAAGTCTCGGTTTATTAAGTCTGAAGTTGTTAAACCTAAGTTTGGTTGATACGGAAAATGACTTTCTTAAGTATGGTTTTTATTCAATATGTGCGTTTGGATTGTGTTAAGCTGTGTTTGAATATGAGTTGATTAGTAATGTATTTGCTCGATAAATTTGGAATTTATAATAAATGGGAGATAATTTATATATTAAATATTTAATTAAATTAATAAAAACTATATATTAAATTATGTTTAAAAGGTAACTTTTATGATTTTAAGAATAAATAAAATATTTTCAACATATTCCTTCGTCCAATTTTCTTCCAATAATTATTTTATAGAATTAAAATTTGATTGTGCATGAAGATATTTCTAGATTATTTACCAAAAGTATGAATAAATATAAACACATTCTTTTAGACAAATATCCTCAACATAAAATTTACCATAAAGAAAAGGTTATCTATTGTTTATTTTATTATTCATAACTTGATATGCTAAATTAAGTTTAATTACTCCTTAATACTTATCATCAAAATTACTATTGAACTCAATTTTCTATAATTAACTAAGACGTCATAAGGTTATAGAGTTAAAATATTTAAATAATATTATTTTAAAGGCTATTACCTTCTAGAGATATAAACTAATCAAAATAGTTACATTAATTAACTTTACAAACATCACGTCTTTAGTTGATTGTGATAACATAATTTTTTATAAAAGAAAAGAAATTTGTACAATTGTAGATTTAGAGAAATTGATGTATTAAATCTAGGTTTATATAACATGTATGGTTTGGAATTTATAATAAAATAATATTTGTTATAATTTTTTTGTTGACAACATGTGAGAGTGGGGGAATTCAAACCTCAAACCTGATTTTAATTATTGGTACAAATCTTATGTCAGTTGAGTATATCAATTGAGCTATGCTGGCTAATGGTTATAATTTACATGTTAATAAAAAATTTAAAATATAATAATAATTAATTTTCTGATAAATTATTAACCATTACTTTATAAATGAATAATTCAATTTTAATAATATTGTTAATCTGAAAACCATCGAATAATTATTTTGTGAAAACAAATATTTAGTTAGTTCCATAATTGTTTTTATTTAAATATTTGTTAGTGTGTGATAAATGAAATTCTTAAATTTATTATAATAAGTACTCTAAACATGACGTTATAACAAGTGTAAATAGTTTTTGAGTTGAGTTGATTTAGCCAAAGCCGATATATCTGTTTATGAATTAGTTGTTATTATTTACTATTTTAACTAAATTCATTTAAATATTTGTTTTAAAATTACAATTAATTATTTATTTTTATTTAACCAATATATTTTACTAAAAAAATTTACTAAAGACAAAATATGTACGGTAGCAAACCGGTGAGTAAAGGTAAAATACTTTAACAACTTGGAGAGTAGAATTATGTATACTATAGCAAATTTGGGTTTGCAAAATTACGAACTAAGGTTTGTTAAAGCTAATCCATACTCCTCACTTTCAAACATAGGGAACCAAAAAAACCGTCCTTATATTATTTGAACCCCAAAAAAAAAAAAAAAATCTTGTATTAACAATTTTGTTTAAACTACTTATTATAGAATAAAAGTACTCAGTAGACGCACATGTTTGCATGGCACAACTTAGCTTTTAAAATAGTGAAAAAGTAATTAAGCAATTAAAATACTTTATAATTTTTCTTAGGTTTAAAAGTATAATAAAAATTTTCCAAGGAAAACTATATAAAATACTTTTGAAGAAACTCGAGTGAACTTGGTTACTTTTTGGAGATGTTAAATGAAGTGTTTTTCTAAATAACCCTATAAAAAGAACTCCATAAAAACACCTTAATAATCACTTATATATATATATATATATATATATATATATATATATTATAGATACATAATTTGGCATTTTTGCTTAGTTATAGCAGGTAAGTTGAAAAAAAAAAGTGATAATTGGTGATTTGTAATATGGATAGGTGGAGTTGTGGTCCAAGTAAATTCGACTGGACGTTTAGTGCAACAGAGACAGTATATCTATTAGAGGGTAAAGCCAAAATCAACATTGAAGAGCACAACAAGACATTTGAAATTGGAGCGGGTGATCTTGCTGTATTTCCCTCCGGGATGAAGATAAATTTAGATGTCACTGAAGCGATAGACAAACATTACAAAAGATAAGCTACCTAGGCAACCTTTTAAGCTTGCCTTAATTTGAAGTGTTTTGTGTGTGGTACTATTACCATGATCTAATTTTAACGTAAGACAAGTACTTGAAAGTATTCATGTATTAGTCAAAATAATAAGTATGTATGTGTTGATTTGGGACTTTTCATTCTTGCAAAAAGTCATTCCAAGCTTTTAGCTTTTGTTGGGACTTGTACTATAAATAGATGAATCAATGAAATAAAACTTTTTAGGGTCACCTTGTGTGTGCCTTTACAACAATGTCAAACTTTTAATATATATGACAATATCATTTCTTTTAAAAAAAAGAATCTACAACAATAATTAGTGATTTACTATTTCAAAATTATTAAATACTTATATGGTAAGCTTTTATTTGAAAACAGGGCCAATATTAATAGTTAAAAATATTTCACCAAAAAAAAATAGTGAAAAAGATGGTTAATGATTGTTATAGGCAATTTTTGACCACCCTGATGTACAAGGAGCTGACGAGGACAACCGAGGAGAAATCAGGCTGGAAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCAACCCCCTGCTCGGCCTCGGCCCAAGGCCGAGGCCGTCCCTTGCCCCGCTCGCGTTTGGTCCCTACCACCTTTGGCCGACCCGGTTCCGCCTGGTTTGTCTCGAAACGCCTCTGAACTCCTAAAAACCCTAGGATGA

mRNA sequence

ATGTCGATGGAGTTATTTGGCGTGAAGCTCGAAAGAAATGTTCCACAGTCCAAACTCAACGACCTTGGTGTTTACACATGGCCCAAGTGGAGTTGTGGTCCAAGTAAATTCGACTGGACGTTTAGTGCAACAGAGACAGTATATCTATTAGAGGGTAAAGCCAAAATCAACATTGAAGAGCACAACAAGACATTTGAAATTGGAGCGGGTGATCTTGCTGCAATTTTTGACCACCCTGATGTACAAGGAGCTGACGAGGACAACCGAGGAGAAATCAGGCTGGAAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCAACCCCCTGCTCGGCCTCGGCCCAAGGCCGAGGCCGTCCCTTGCCCCGCTCGCGTTTGGTCCCTACCACCTTTGGCCGACCCGGTTCCGCCTGGTTTGTCTCGAAACGCCTCTGAACTCCTAAAAACCCTAGGATGA

Coding sequence (CDS)

ATGTCGATGGAGTTATTTGGCGTGAAGCTCGAAAGAAATGTTCCACAGTCCAAACTCAACGACCTTGGTGTTTACACATGGCCCAAGTGGAGTTGTGGTCCAAGTAAATTCGACTGGACGTTTAGTGCAACAGAGACAGTATATCTATTAGAGGGTAAAGCCAAAATCAACATTGAAGAGCACAACAAGACATTTGAAATTGGAGCGGGTGATCTTGCTGCAATTTTTGACCACCCTGATGTACAAGGAGCTGACGAGGACAACCGAGGAGAAATCAGGCTGGAAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCCAACCCCCTGCTCGGCCTCGGCCCAAGGCCGAGGCCGTCCCTTGCCCCGCTCGCGTTTGGTCCCTACCACCTTTGGCCGACCCGGTTCCGCCTGGTTTGTCTCGAAACGCCTCTGAACTCCTAAAAACCCTAGGATGA

Protein sequence

MSMELFGVKLERNVPQSKLNDLGVYTWPKWSCGPSKFDWTFSATETVYLLEGKAKINIEEHNKTFEIGAGDLAAIFDHPDVQGADEDNRGEIRLEDGPKRRNRQVGRAKTEGVGLLAQPPARPRPKAEAVPCPARVWSLPPLADPVPPGLSRNASELLKTLG

Homology

[Close]

BLAST of Lag0039327 vs. NCBI nr
Match: XP_022156027.1 (uncharacterized protein LOC111022998 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-28
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSMELFGVKLERNVPQSKLNDLGVYTWPKWSCGPSKFDWTFSATETVYLLEGKAKINIEE 60
          M+ ELFGV++ERNVPQ+KL +L VYTWPKWSCGPSKFDWTFSA ETVY LEGKAKI IEE
Sbjct: 1  MATELFGVRIERNVPQAKLKELDVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60

Query: 61 HNKTFEIGAGDLAAIFDH 79
          HN+TFEIGAGD+ A+F H
Sbjct: 61 HNETFEIGAGDM-AVFPH 77

[Close]

BLAST of Lag0039327 vs. NCBI nr
Match: XP_021813510.1 (uncharacterized protein LOC110756390 [Prunus avium])

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-20
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MSMELFGVKLERNVPQSKLNDLGVYTWPKWSCGPSKFDWTFSATETVYLLEGKAKINIEE 60
           M+   FGVK+E+N  QSKL +LGV TWPKWSCGPSKF W+F+ATET+YLLEGK  + ++ 
Sbjct: 47  MATNAFGVKVEKNPAQSKLTELGVTTWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 106

Query: 61  HNKTFEIGAGDLA 74
           H  +F IGAGDLA
Sbjct: 107 HEGSFTIGAGDLA 119

[Close]

BLAST of Lag0039327 vs. NCBI nr
Match: XP_023904603.1 (uncharacterized protein LOC112016307 [Quercus suber])

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-20
Identity = 44/72 (61.11%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1   MSMELFGVKLERNVPQSKLNDLGVYTWPKWSCGPSKFDWTFSATETVYLLEGKAKINIEE 60
           M+ E FGVK+++N P+SKL +LGV TWPKW CGPSKF W F+ATET++LL+GK K+ ++ 
Sbjct: 41  MATEKFGVKIQKNPPESKLTELGVRTWPKWGCGPSKFPWEFTATETMFLLDGKVKVYVDG 100

Query: 61  HNKTFEIGAGDL 73
           ++++FEIGAGDL
Sbjct: 101 YDESFEIGAGDL 112

[Close]

BLAST of Lag0039327 vs. NCBI nr
Match: XP_031286750.1 (uncharacterized protein LOC116145430 [Pistacia vera])

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-20
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 4   ELFGVKLERNVPQSKLNDLGVYTWPKWSCGPSKFDWTFSATETVYLLEGKAKINIEEHNK 63
           E+FGVK+E+N PQSKL++L V +WPKW C PSKF WTF ATET+YLLEGK ++ +E H  
Sbjct: 117 EIFGVKIEKNPPQSKLDELDVSSWPKWECPPSKFPWTFKATETMYLLEGKVQVYVEGHEG 176

Query: 64  TFEIGAGDL 73
           +FEIGAGDL
Sbjct: 177 SFEIGAGDL 185

[Close]

BLAST of Lag0039327 vs. NCBI nr
Match: KAF3951790.1 (hypothetical protein CMV_022594 [Castanea mollissima])

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-20
Identity = 44/72 (61.11%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1   MSMELFGVKLERNVPQSKLNDLGVYTWPKWSCGPSKFDWTFSATETVYLLEGKAKINIEE 60
           M+ E FGVK+++N P+SKL +LGV TWPKW CGPSKF W F+ATET++LL+GK K+ ++ 
Sbjct: 45  MATEKFGVKIQKNPPESKLTELGVRTWPKWGCGPSKFPWEFTATETMFLLDGKVKVYVDG 104

Query: 61  HNKTFEIGAGDL 73
           ++++FEIGAGDL
Sbjct: 105 YDESFEIGAGDL 116

The following BLAST results are available for this feature:

BLAST of Lag0039327 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156027.1	1.0e-28	79.49	uncharacterized protein LOC111022998 [Momordica charantia]	[more]
XP_021813510.1	3.9e-20	64.38	uncharacterized protein LOC110756390 [Prunus avium]	[more]
XP_023904603.1	3.9e-20	61.11	uncharacterized protein LOC112016307 [Quercus suber]	[more]
XP_031286750.1	3.9e-20	66.67	uncharacterized protein LOC116145430 [Pistacia vera]	[more]
KAF3951790.1	3.9e-20	61.11	hypothetical protein CMV_022594 [Castanea mollissima]	[more]

BLAST of Lag0039327 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	(S)-ureidoglycine aminohydrolase, cupin-3 domain	PFAM	PF05899	Cupin_3	coord: 21..73 e-value: 4.5E-14 score: 51.9
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 1..78 e-value: 2.3E-19 score: 70.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..107
None	No IPR available	PANTHER	PTHR33271:SF1	RMLC-LIKE JELLY ROLL PROTEIN-RELATED	coord: 2..73
None	No IPR available	PANTHER	PTHR33271	OS04G0445200 PROTEIN	coord: 2..73
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 12..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039327.1	Lag0039327.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane