Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAGAAATAAGAAGCTACAGAGGGAAATTGAACTCTTGCAAGGTGAGGCGGAAGCTCAAAAGGTGCACATTCGAGAGTTGAAACGAGAAATAGAAAGACTCAATGACATTATCAAAGGCTTCCAAGGTACAATAAATGAACAAGCCACGACATCCCAGGAGGTCATCGCCTTCTTACAAAAGGAAACAGAGGCATTGCAGAAAATGAAAGAAGAATACAAGAGTCAACTCACAAAGGCAGAGCGTAGAAATGGAGTTCTCCAGGAGGCAGTA GTAAACTTTGAGCAGCAGTTGGGAATGTTTTGAGATGCCAATGAAGTAATAACAAACGAGCATGCACAATTGAAGGAAGAGTACCGAGAGATGTCCAGAGATTTTGCAATATGGAGAGATGAGTACAGGAACCTAAGGCGTTACTATGATGGCGTAAGAGGACAGATTGAACGAGCAGCTGGGAAGTTGAGATTGATGGCAATGATGGCAGATCGGTTTGTCGAACAAACCATGACTCTCTGA mRNA sequence
ATGAGAAAAAGAAATAAGAAGCTACAGAGGGAAATTGAACTCTTGCAAGGTGAGGCGGAAGCTCAAAAGGTGCACATTCGAGAGTTGAAACGAGAAATAGAAAGACTCAATGACATTATCAAAGGCTTCCAAGGTACAATAAATGAACAAGCCACGACATCCCAGGAGGTCATCGCCTTCTTACAAAAGGAAACAGAGGCATTGCAGAAAATGAAAGAAGAATACAAGAGTCAACTCACAAAGGCAGAGCGTAGAAATGGAGTTCTCCAGGAGGCAGTAGAAGAGTACCGAGAGATGTCCAGAGATTTTGCAATATGGAGAGATGAGTACAGGAACCTAAGGCGTTACTATGATGGCGTAAGAGGACAGATTGAACGAGCAGCTGGGAAGTTGAGATTGATGGCAATGATGGCAGATCGGTTTGTCGAACAAACCATGACTCTCTGA Coding sequence (CDS)
ATGAGAAAAAGAAATAAGAAGCTACAGAGGGAAATTGAACTCTTGCAAGGTGAGGCGGAAGCTCAAAAGGTGCACATTCGAGAGTTGAAACGAGAAATAGAAAGACTCAATGACATTATCAAAGGCTTCCAAGGTACAATAAATGAACAAGCCACGACATCCCAGGAGGTCATCGCCTTCTTACAAAAGGAAACAGAGGCATTGCAGAAAATGAAAGAAGAATACAAGAGTCAACTCACAAAGGCAGAGCGTAGAAATGGAGTTCTCCAGGAGGCAGTAGAAGAGTACCGAGAGATGTCCAGAGATTTTGCAATATGGAGAGATGAGTACAGGAACCTAAGGCGTTACTATGATGGCGTAAGAGGACAGATTGAACGAGCAGCTGGGAAGTTGAGATTGATGGCAATGATGGCAGATCGGTTTGTCGAACAAACCATGACTCTCTGA Protein sequence
MRKRNKKLQREIELLQGEAEAQKVHIRELKREIERLNDIIKGFQGTINEQATTSQEVIAFLQKETEALQKMKEEYKSQLTKAERRNGVLQEAVEEYREMSRDFAIWRDEYRNLRRYYDGVRGQIERAAGKLRLMAMMADRFVEQTMTL
Homology
BLAST of Lag0039326 vs. NCBI nr
Match:
KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 114.4 bits (285), Expect = 8.5e-22
Identity = 77/173 (44.51%), Postives = 100/173 (57.80%), Query Frame = 0
Query: 1 MRKRNKKLQREIELLQGEAEAQKVHIRELKREIERLNDIIKGFQGTINEQATTSQEVIAF 60 MRK+NK+L R I L E EA+KV I +LK EIE+LN I FQ ++EQA +SQ+ Sbjct: 54 MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113 Query: 61 LQKETEALQKMKEEYKSQLTKAERRNGVLQEAV-------------------------EE 120 + E LQ + EEYKSQL +A+ +N LQ+AV E+ Sbjct: 114 I----EVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEK 173 Query: 121 YREMSRDFAIWRDEYRNLRRYYDGVRGQIERAAGKLRLMAMMADRFVEQTMTL 149 Y+EMS DF +W+DEY LRR YD G++ER A KLR MA +AD+F Q TL Sbjct: 174 YQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTL 222
BLAST of Lag0039326 vs. NCBI nr
Match:
KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 76/173 (43.93%), Postives = 98/173 (56.65%), Query Frame = 0
Query: 1 MRKRNKKLQREIELLQGEAEAQKVHIRELKREIERLNDIIKGFQGTINEQATTSQEVIAF 60 +RK+NK+L R I L E EA+KV I +LK EIE+LN I FQ ++EQA +SQ+ Sbjct: 54 VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113 Query: 61 LQKETEALQKMKEEYKSQLTKAERRNGVLQEAV-------------------------EE 120 + E LQ EEYKSQL +AE +N LQ+AV E+ Sbjct: 114 I----EVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEK 173 Query: 121 YREMSRDFAIWRDEYRNLRRYYDGVRGQIERAAGKLRLMAMMADRFVEQTMTL 149 Y+EMS DF +W+DEY LRR YD ++ER A KLR MA +AD+F Q TL Sbjct: 174 YQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTL 222
BLAST of Lag0039326 vs. NCBI nr
Match:
KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 86.7 bits (213), Expect = 1.9e-13
Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = 0
Query: 1 MRKRNKKLQREIELLQGEAEAQKVHIRELKREIERLNDIIKGFQGTINEQATTSQEVIAF 60 +R+ N+ L+ E E L+ E ++ H +ELK E+E ++ + FQ + EQ T++Q + A Sbjct: 48 LREMNQVLEPENEGLREEVNSKGEH-KELKHELESVSKVFVDFQSALVEQGTSTQRITAG 107 Query: 61 LQKETEALQKMKEEYKSQLTKAERRNGVLQEAV-------------------------EE 120 + E LQ +EYK ++T+ + +N +LQEAV E Sbjct: 108 I----EILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLKNE 167 Query: 121 YREMSRDFAIWRDEYRNLRRYYDGVRGQIERAAGKLRLMAMMADRFVEQTMTL 149 ++E+ DFAIWRDEY +R Y+ V+GQIE+ KLR MA AD+F +T+ L Sbjct: 168 HKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIAL 215
BLAST of Lag0039326 vs. NCBI nr
Match:
XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])
HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 65/175 (37.14%), Postives = 92/175 (52.57%), Query Frame = 0
Query: 2 RKRNKKLQREIELLQGEAEAQKVHIRELKREIERLNDII---KGFQGTINEQATTSQEVI 61 +++ +L++E + L EA + + L R I L++ I K FQ ++EQA +SQ+ Sbjct: 60 KRKRLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTA 119 Query: 62 AFLQKETEALQKMKEEYKSQLTKAERRNGVLQEAV------------------------- 121 + E LQ EEYKSQL +AE +N LQ+AV Sbjct: 120 MGI----EVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLM 179 Query: 122 EEYREMSRDFAIWRDEYRNLRRYYDGVRGQIERAAGKLRLMAMMADRFVEQTMTL 149 E+Y+EMS DF +W+DEY LRR YD ++ER A KLR MA +AD+F Q TL Sbjct: 180 EKYQEMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTL 230
BLAST of Lag0039326 vs. NCBI nr
Match:
KAA0051514.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 77.8 bits (190), Expect = 8.8e-11
Identity = 63/173 (36.42%), Postives = 78/173 (45.09%), Query Frame = 0
Query: 1 MRKRNKKLQREIELLQGEAEAQKVHIRELKREIERLNDIIKGFQGTINEQATTSQEVIAF 60 MRK+NK+L R I L E EA+ + + Sbjct: 17 MRKKNKRLLRNIADLHEEMEAKNIVV---------------------------------- 76 Query: 61 LQKETEALQKMKEEYKSQLTKAERRNGVLQEAV-------------------------EE 120 E E L + EEYKSQ+ +AER+N LQEAV E Sbjct: 77 ---EVEVLWQSVEEYKSQVIEAERKNRFLQEAVNSSEGQLLICHKARKVATNDYAQLIEI 136 Query: 121 YREMSRDFAIWRDEYRNLRRYYDGVRGQIERAAGKLRLMAMMADRFVEQTMTL 149 Y+EMS DF IWR+EY LRR YDG RGQ+E+ KLR MA M D+F+ Q TL Sbjct: 137 YQEMSIDFMIWRNEYNTLRRKYDGARGQMEQGPEKLRQMARMNDQFLVQARTL 152
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0065294.1 8.5e-22 44.51 glial fibrillary acidic protein-like [Cucumis melo var. makuwa] [more]
KAA0025321.1 1.6e-20 43.93 glial fibrillary acidic protein-like [Cucumis melo var. makuwa] [more]
KAA0033848.1 1.9e-13 35.26 glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia... [more]
XP_008464352.1 1.6e-12 37.14 PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo] [more]
KAA0051514.1 8.8e-11 36.42 glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glia... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G A G A A A A A G A A A T A A G A A G C T A C A G A G G G A A A T T G A A C T C T T G C A A G G T G A G G C G G A A G C T C A A A A G G T G C A C A T T C G A G A G T T G A A A C G A G A A A T A G A A A G A C T C A A T G A C A T T A T C A A A G G C T T C C A A G G T A C A A T A A A T G A A C A A G C C A C G A C A T C C C A G G A G G T C A T C G C C T T C T T A C A A A A G G A A A C A G A G G C A T T G C A G A A A A T G A A A G A A G A A T A C A A G A G T C A A C T C A C A A A G G C A G A G C G T A G A A A T G G A G T T C T C C A G G A G G C A G T A G A A G A G T A C C G A G A G A T G T C C A G A G A T T T T G C A A T A T G G A G A G A T G A G T A C A G G A A C C T A A G G C G T T A C T A T G A T G G C G T A A G A G G A C A G A T T G A A C G A G C A G C T G G G A A G T T G A G A T T G A T G G C A A T G A T G G C A G A T C G G T T T G T C G A A C A A A C C A T G A C T C T C T G A 50 100 150 200 250 300 350 400 Score = Score = Expect = 9.6E-7 / Score = 30.2 Score = Sequence Coil Coil G3DSA:1.10.287.1490 SSF46579
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 5..46
None No IPR available COILS Coil Coil coord: 58..109
None No IPR available GENE3D 1.10.287.1490 coord: 1..140 e-value: 9.6E-7 score: 30.2
None No IPR available SUPERFAMILY 46579 Prefoldin coord: 5..97
Relationships
The following mRNA feature(s) are a part of this gene: