Lag0039321 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039321
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr2: 41359740 .. 41360600 (-)
RNA-Seq Expression	Lag0039321
Synteny	Lag0039321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAAAGCGGTAATTTTCAAGTGCATGGAGGATTGGGACTTAATAATCAAGGAGATCCCAGTGTGATCTGTCTTCCCAAAAGCAAAGAGATACTTGGATTGGGATACAAGCCAACAGCTTCAGAATGGGAGACGGTCAGAGCAGAAAAGAAAGAAGTAAGGAATGCACGGCCCGAAGGGCAAGAAATCAAGCAAGGAAATATGAATATACCACATCTATCTAAGACTTTCAAGAGAGGTGAAGTGATTCATGATGACAACCAATCCTACAACAAAGCTTCCGATATTTCAATCGTTGTTGTCACTGAAGGCACAACTGCGCCTCGACAACTGGTTCGTCCCTTTCCTCCAGAGTTCGAGTTGAAGAATTGGAAAATTAAAGAGATGCTGAGAGTCACTAGGGAGATACAAAAGTAATTGTTATGAACTACCTAATAAAGTAATTGTTATGAACTACCTAATTGCTATGCCTAAGGCCAATGGGATATCTTCGTAATAATGGCTTCTTCAATATTTTGTCTTCCGTAGATGCAATCTTGATGTCTAACGATTACTTTGTACTTTTATTGTTAAGCAATGAAAAGAGATTGTCGACTTTTATCTAGTACAATCATTTTATTTACTCATTTCGCTTCCGAGCATGTTATTAGTTTCTTGTCTTTTGCTTATTATTTTATCATCCTCTATCTATCACCAATACGACTCGGGGTCGATAACAGGGGCAATGGAGAGGGAACATTTGACTTTGGAGTCCCAATTTATAATCTCGAGCAAAGCATGGAAGATGATTGTAATGTGTCACTAGAATTGCTAAGGTTGATAAAGCAAGAGGAGAAAGAAACTATGCCATACCAATAG

mRNA sequence

ATGTTAAAAAGCGGTAATTTTCAAGTGCATGGAGGATTGGGACTTAATAATCAAGGAGATCCCAGTGTGATCTGTCTTCCCAAAAGCAAAGAGATACTTGGATTGGGATACAAGCCAACAGCTTCAGAATGGGAGACGGTCAGAGCAGAAAAGAAAGAAGTAAGGAATGCACGGCCCGAAGGGCAAGAAATCAAGCAAGGAAATATGAATATACCACATCTATCTAAGACTTTCAAGAGAGGTGAAGTGATTCATGATGACAACCAATCCTACAACAAAGCTTCCGATATTTCAATCGTTGTTGTCACTGAAGGCACAACTGCGCCTCGACAACTGGTTCGTCCCTTTCCTCCAGAGTTCGAGTTGAAGAATTGGAAAATTAAAGAGATGCTGAGAGTCACTAGGGAGATACAAAAGGGCAATGGAGAGGGAACATTTGACTTTGGAGTCCCAATTTATAATCTCGAGCAAAGCATGGAAGATGATTGTAATGTGTCACTAGAATTGCTAAGGTTGATAAAGCAAGAGGAGAAAGAAACTATGCCATACCAATAG

Coding sequence (CDS)

ATGTTAAAAAGCGGTAATTTTCAAGTGCATGGAGGATTGGGACTTAATAATCAAGGAGATCCCAGTGTGATCTGTCTTCCCAAAAGCAAAGAGATACTTGGATTGGGATACAAGCCAACAGCTTCAGAATGGGAGACGGTCAGAGCAGAAAAGAAAGAAGTAAGGAATGCACGGCCCGAAGGGCAAGAAATCAAGCAAGGAAATATGAATATACCACATCTATCTAAGACTTTCAAGAGAGGTGAAGTGATTCATGATGACAACCAATCCTACAACAAAGCTTCCGATATTTCAATCGTTGTTGTCACTGAAGGCACAACTGCGCCTCGACAACTGGTTCGTCCCTTTCCTCCAGAGTTCGAGTTGAAGAATTGGAAAATTAAAGAGATGCTGAGAGTCACTAGGGAGATACAAAAGGGCAATGGAGAGGGAACATTTGACTTTGGAGTCCCAATTTATAATCTCGAGCAAAGCATGGAAGATGATTGTAATGTGTCACTAGAATTGCTAAGGTTGATAAAGCAAGAGGAGAAAGAAACTATGCCATACCAATAG

Protein sequence

MLKSGNFQVHGGLGLNNQGDPSVICLPKSKEILGLGYKPTASEWETVRAEKKEVRNARPEGQEIKQGNMNIPHLSKTFKRGEVIHDDNQSYNKASDISIVVVTEGTTAPRQLVRPFPPEFELKNWKIKEMLRVTREIQKGNGEGTFDFGVPIYNLEQSMEDDCNVSLELLRLIKQEEKETMPYQ

Homology

[Close]

BLAST of Lag0039321 vs. NCBI nr
Match: TYK00092.1 (protein NYNRIN-like [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-46
Identity = 109/189 (57.67%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 1   MLKSGNFQVHGGLGLNNQGDPSVICLPKSKEILGLGYKPTASEWETVRAEKKEVRNARPE 60
           M+KSG FQ+H GLG +NQGD  VI LPK+KE  GLGYKP  SEWE VRA+KKE RNA   
Sbjct: 6   MIKSG-FQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALLM 65

Query: 61  GQEIKQGNMNIPHLSKTFKRGEVIHDDNQ--SYNKASDISIVVVTEGTTAPRQLVRPFPP 120
           G E+K+  ++IPHLS+TFK GE++ D +Q   +N+ S+ISI VV+E  + P  LV   PP
Sbjct: 66  GCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPP 125

Query: 121 EFELKNWKIKEMLRVTREIQKGNG-EG-TFDFGVPIYNLEQSM-EDDCNVSLELLRLIKQ 180
            FEL NW+IK+ L+VT+  QK    EG   DF VPIYNLEQ++ E + ++S ELLRLI+Q
Sbjct: 126 GFELNNWEIKKTLKVTKGSQKNTRVEGDAVDFEVPIYNLEQNIGEGESDISPELLRLIEQ 185

Query: 181 EEKETMPYQ 185
           EEK+TMPYQ
Sbjct: 186 EEKKTMPYQ 193

[Close]

BLAST of Lag0039321 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 5.2e-45
Identity = 107/196 (54.59%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 1    MLKSGNFQVHGGLGLNNQGDPSVICLPKSKEILGLGYKPTASEWETVRAEKKEVRNARPE 60
            M+KSG FQ+H GLG +NQGD  VI LPK+KE  GLGYKP  SEWE VRA+ KE R+A   
Sbjct: 969  MIKSG-FQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRSALLM 1028

Query: 61   GQEIKQGNMNIPHLSKTFKRGEVIHDDNQ--SYNKASDISIVVVTEGTTAPRQLVRPFPP 120
            G E+K+  ++IPHLS+TFK GE++ D +Q   +N+ S+ISI VV+E T+ P  LV   PP
Sbjct: 1029 GCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIEVVSENTSLPHPLVHKCPP 1088

Query: 121  EFELKNWKIKEMLRVTREIQK---------GNGEGTFDFGVPIYNLEQSM-EDDCNVSLE 180
             FEL NW+IK+ L+VT+  QK         G+ + T DF VPI NLEQ++ E + ++S E
Sbjct: 1089 GFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDTVDFEVPICNLEQNIGEGESDISPE 1148

Query: 181  LLRLIKQEEKETMPYQ 185
            LLRLI+QEEK+TMPYQ
Sbjct: 1149 LLRLIEQEEKKTMPYQ 1163

[Close]

BLAST of Lag0039321 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-42
Identity = 104/192 (54.17%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 1    MLKSGNFQVHGGLGLNNQGDPSVICLPKSKEILGLGYKPTASEWETVRAEKKEVRNARPE 60
            M+KSG FQ+H GLG +NQGD  VI LPK+KE  GLGYKP  SE E VRA+KKE R+A   
Sbjct: 1458 MIKSG-FQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRSALLM 1517

Query: 61   GQEIKQGNMNIPHLSKTFKRGEVIHDDNQ--SYNKASDISIVVVTEGTTAPRQLVRPFPP 120
            G E+K+  ++IPHLS+TFK GE++ D +Q   +N+ S+I I VV+E T+ P  LV   PP
Sbjct: 1518 GCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVHKCPP 1577

Query: 121  EFELKNWKIKEMLRVTREIQK-----GNGEGTFDFGVPIYNLEQSM-EDDCNVSLELLRL 180
             FEL NW+IK+ L+VT+  QK     G+ +   DF VPI NLEQ++ E + ++S ELLRL
Sbjct: 1578 GFELNNWEIKKTLKVTKGSQKNTRVEGDVDDAVDFEVPICNLEQNIGEGESDISPELLRL 1637

Query: 181  IKQEEKETMPYQ 185
            I+QEEK+TM YQ
Sbjct: 1638 IEQEEKKTMSYQ 1648

[Close]

BLAST of Lag0039321 vs. NCBI nr
Match: KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 7.7e-41
Identity = 103/192 (53.65%), Postives = 132/192 (68.75%), Query Frame = 0


Query: 1   MLKSGNFQVHGGLGLNNQGDPSVICLPKSKEILGLGYKPTASEWETVRAEKKEVRNARPE 60
           M+KS  FQ+H GLG +NQGD  VI LPK+KE  GLGYKP ASEWE VRA+KKE R+    
Sbjct: 372 MIKS-CFQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRSTLLV 431

Query: 61  GQEIKQGNMNIPHLSKTFKRGEVIHDDNQ--SYNKASDISIVVVTEGTTAPRQLVRPFPP 120
           G E+K+  ++IPHL +TFK  E++ D NQ    N+ S+ISI VV+E T+    LV   PP
Sbjct: 432 GCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVHQCPP 491

Query: 121 EFELKNWKIKEMLRVTREIQK-----GNGEGTFDFGVPIYNLEQSME-DDCNVSLELLRL 180
            FEL NW+IK+ L VT+  QK     G+ +   DF VPI NLEQ++E  + ++S ELLRL
Sbjct: 492 GFELNNWEIKKTLEVTKGSQKSTRVEGDVDDVVDFKVPICNLEQNIEVGEFDISPELLRL 551

Query: 181 IKQEEKETMPYQ 185
           I+QEEK+TM YQ
Sbjct: 552 IEQEEKKTMLYQ 562

[Close]

BLAST of Lag0039321 vs. NCBI nr
Match: KAA0052108.1 (uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa] >TYJ98088.1 uncharacterized protein E5676_scaffold565G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 4.0e-37
Identity = 92/175 (52.57%), Postives = 122/175 (69.71%), Query Frame = 0


Query: 16  NNQGDPSVICLPKSKEILGLGYKPTASEWETVRAEKKEVRNARPEGQEIKQGNMNIPHLS 75
           +NQGD  VI L K+KE  GLGYKP ASEWE VR +KKE R+A   G+E+K+  ++IPHLS
Sbjct: 218 DNQGDSEVISLSKAKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMKEERISIPHLS 277

Query: 76  KTFKRGEVIHDDNQSYNKA--SDISIVVVTEGTTAPRQLVRPFPPEFELKNWKIKEMLRV 135
           +TFK  E++ D +Q   +   S+ISIVVV+E T  P  LV   PP FEL NW+IK+ L V
Sbjct: 278 ETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELNNWEIKKTLEV 337

Query: 136 TREIQ---KGNGEGTFDFGVPIYNLEQSMED-DCNVSLELLRLIKQEEKETMPYQ 185
           T+      +G+ +   DF VPI NLEQ++E+ + ++S EL RLI+QEEK+TMPYQ
Sbjct: 338 TKGSSTRVEGDVDDAVDFEVPICNLEQNIEEGESDISPELRRLIEQEEKKTMPYQ 392

The following BLAST results are available for this feature:

BLAST of Lag0039321 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00092.1	4.7e-46	57.67	protein NYNRIN-like [Cucumis melo var. makuwa]	[more]
KAA0065293.1	5.2e-45	54.59	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
KAA0033221.1	1.4e-42	54.17	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
KAA0043020.1	7.7e-41	53.65	uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]	[more]
KAA0052108.1	4.0e-37	52.57	uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa] >TYJ9...	[more]

BLAST of Lag0039321 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039321.1	Lag0039321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding