Lag0039315 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039315
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibosome biogenesis regulatory protein
Locationchr2: 41152498 .. 41158842 (-)
RNA-Seq ExpressionLag0039315
SyntenyLag0039315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTACGATTCCTGGGTGTTGCTGAAGACAGAGAGGGTCCCCTAGTGAAGTTGTCTCCACCTAAAACAAGACTGTCGAGGGTGAAGCCTTATAAGCCCTTGAATAATTTTATATTTTCGTTTATTGTGTCATTGTGGCTTTTAAAATACGGGTGCTTACATTTTTTGTTGATGTAATATCTTTCTTTCCAGGTTCCAAAGCCTAAGTCTCCTACAAAATGGGAACTTCTGGCTAAAAAACGAGGTTGGCCATTTTTGTTATATATGCTTTCATCCCTTTTTGTGTTGTTTTGTTTTGTATTAGAATTCATATTTCCAATCCTTCAATTGTGGGATTTTAGTACTTCATTTTTTTGCAGGTATAAAGAACAGGAAAAAATACAATATTGTATATGATGAACAAACTCAAACATGGAAGCGTCGTCATGGTTATGATCGTGCAAATTATGAGGAGAACATACTCATCATTGAAGTCAGGATGACTGATGGTATTATTTAATATAACCTTGCATTTTACGATAAGCTACTTTTTCATTCGTTAGTTATATGTTTGTTTATTTCTTTCTTGATATCAAAATTCTGAACATTTTGCTTGACAGAGATAATTTGAACTTTTATTGATTACATTTTTTGATATCCAATGGTCAGTGGACGCCTAATGCTCATTGATATGGCTGGTGAAAATTTAGAGCAAGTTAGACAAGTTGAATTTGAGGAAAAAAATAATGCATGTGCAAATTGGTTTTAGGTTTCTAATATATAATAGAGGTTTGGTGATTACCCTTTTGTTAAACATATTACTGATCTTTTTTCTTATTTATTCTACATGGTATTTTTAACATATTCCAAAAGTTTTGGTTCGTTAACTTTTATCTATCCATATGCTCTGTTTTTCGTAGTCGATGTAGGCGCTTGAGACAGGCTATTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAAGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAGATTAATGCAGCCACAGGTAATTCAGAAAAGCACACTGCTATTGTAATCAATATTCATTTTGTGTACGGTTCAATGAAATTATATCGTATGGCCTCTGCAATTTCTTTTAGTTTTCCATTTCCTCCAATACCTTTTGTAATGAATTTGATAGCACAGATTCTCAAATTGTTTTGAACATACACCTTTATCTGGCACATTGTTTTTAAATTTTGCATTGTGTTAAAGATCATCTTAATCCCAGATTTGATGTACTGTACATGTTTTTCTAGCTATGTCTATGGACTTTATTTATGGGAAATAAACTTCCCAAGTGACTGTAGAACAATCAATTCTTGCATATATGAAGTGGAGCTTATTCATACACAGATGGGCAGAGACCTTGCAAATCTCTTGTGAATGTCAGAATTGTTACTTGAAAGAGTAGTTGACAACATATTAGTATAACAAATAGTAAAGGTACTTCTTAACCATAGATGATTGAATAATAATGGTAAATTCTTGTTAGAGTTGAATAATAGTTTATTCAGGTTTACTCTTAATTGTGGCTTTTAAAAGAATTGTTATTATAGATTAAACTAGTTTAGTGATTAAATGCAGTCTCTCCTTTTTGTTCTACAACATTTTTATTCATCTTTTCTTGTTGTTTTTCTGGTGTCAAAAGTTTATGCATGAAGTTGCTATTCTAGTTAAATTCCTTTTTGTTCTACAACATTTTTATTCATCTTCTCTACTTTACCCATACGCCTTGAGCTTTAATTTTAGTTGAAGGATTTGATTGGAGATGTGTGGCGATTGCATTTCACTTATACGTTCTTTTATTTGTGTAAGGTTTGGAATTCATCTTTTTAAGCGAGAACGGTTGTAGATGATGAAATGGAAATTCTTGAAAAGAAGCTCGAATTTGAACTTGGGAAAGAGCATTTGAGGAGCTGTGTACTTATTTTATTTTGTAATTTTACTTTTTCATTGTAAATTTGTTTCATGGATGTGATTTGTGGATGGACTGAAAGTTTCATGTATTATATACATTGTTATATTTTATTAATTAAATTCATGTTGGTTGAGTTTTAATAGTTATGTAAAAATACTTTGGAGATTTTATTTTGTGTATAAGTTTAAATTCTATTTTGTTTACAAGTTTTTACAAAATGAAGAAATAGTATTGTTGGTTAGCTACGTGTGCAACCAAAATTTTTTTTAATTGAATATCACACATTTAATGTCGGACACTTTTAATGTCGCACATTTAATGTCAGACACTTTTAATGTCATGACTTTTAATGTCGGGCAATGACCGACATTAAAAACTGACCGACATTAAAAGTGACTTTTAATGTCAGACAAAGAGTGGTTGTCCGACATAAAAAGTTCACTTTTAATGTCGGGCATTGGCCGACATTAAAAGTGATTTTTAATGTCGGTCAAAGCTTGTTGAATGACATTAAAAGGGTCCTTTTAATGTCGGGCAATGACTGACATTAAAAGGGTACTTTTAATGTCGGACAAAGCTTTTAATGTCGGGCAATGACAGACATTAAAAGCGAACGACATTAAAAGCGACCGACATTAAAACTTTTAATGTCGGTGTTTTTAATGTCGGTCAGTGACCGACATTAAAAGTCAAATTTGTTGTAGTGCCTCCAAATTTTCCCACTTGGAACAAATTATTTTCATAAAAAGTTGGGAAAATAGGCTTATTGGGTTTCAAAATCAGCATTGAAATTCTGGAAAATTTCCCTTTTAAAACTATCTTTTTCATACCAAAAATCAATAAAACAAATACCTTTCAAAACCATTTAAAACACAAAACAAGATTTCAATTCTCCAATCTTTAAAACCTTCAAAACTACCTTAAAATTGGGATAAAAATCCAGAAAATTTTTATTCTAAGCTTTTCACACTAAAACAAATCAATAATGGATACATTTAAAATACAAAACCAGATCTGAAAACCCCAATAAAACTTTTGTAAAATCAGTAAAAACATTTCATTTTCATGAAGAAATCAAAGCCATAAATCATACTTCAATTTAGCAATCGTAGGCAAACTTTTTGAACAAAAAGATTCCAATTTAAACACAAAAACAACCCCAAAATCAAATAAATTCAAGGCTGAAATTCTGGAAAAATTCTTTTTTCCTCAAATCTTGAATTTAAACCAAAAGCCCTAAGAGGAAAAATTTTGATAAAAAATTTAGGCCAAAACAAAAACCTAAAACTTTTTAGGGCAAAATGTTTGAAAACCAATTTCATCCAAAATAGAACAAAGAAAACTTCATACTAAAACTTTTCAACAAGAAAAGAAAAAAAAAAAAAAAAAAAAAACACAGAAGGGAAGAAAAACTTACTACTTTTTCTTTGGGAAAGAAAGTGTAGAATGCGTTCCCCTTCTCTCTTTTTTTGATTCAGAGCGTAAAATATAATTAGGGCTAAAGAAAATGGTCTTTTAAATAGAACCCTAATTAAAACTCTAAAAGAATATTTCCTTTTCTAATAAGGATAAGGATAATTCAAATTTACCTCCCAATTCAAAAGGGAAATAAATTTAAATAAAAGATTTTCTTGAAAACATTAAAATAAATTAATCTTTTTCTTTCTTTAAAATAATAATACGACTGTTACACTTTCTCTCTCCAATCTCTCACTACTCCAATTTCTCTTTCTGATCTCTCGCTTTCTCCAGTCTCTCGATCTCGTTGTGTGCTCTTTGGAGAGAGAAAAGAAGGAGAGAAAAAGGGACAAGAAAAAATTGAGAGAGAAATGAGAGAGTAGGCATTAGAGAGAGAGAGAAACAAGTTCAGAGAAAAAATAGCAAGAGAAAAAAATGCATGTTTTCGTAGGGAGAGTAAAATGATAATTTTGTTAGGATAATGACATAAGCAAAACAAACCTTAACATTTTTTATTTGGACCTATTTAAATGAGTCATTTACACAAAAAAAAAGGTCATTTACACAAAAAATGGTCATTTACACAAAATTCTCAATTACCTATTAGGGTGTTTCCAGGCAATTGGAACTTATGGGCCCATTTGATTGTTGATTTGTAAAAATGGGCCCATTTTTAAAATCTCTTATTTGGGGACCCTGTGACCTTGCAATTACCAAAATAGCCTTGTCCTTAAAACTTCCCTCTCCCTCCCGATTTCGACCATTGCTGCTCCCTTCTTCTTCCTCTCAACTGCCTTGATCCCTTCTTCTTCCTCATGCTCGACAACAACCGACCCATAAGTTCCAATTCTTCAAGAGGCGGTTTTAAAAAGATGAAAAAAAAACTTGTATCATTTTAGAAAGATGAAAAATAAAAGAAAAAAAAATAGAGAAAAGGGAATGTTGATATTGAATTTAGTAAATTTCGGTCGAAAATGGCCGAGATTCATGCATTCCCGGTCGCATTTTGGCCGAAAATCATGCAAATCCGCCCAAAATAATGAATCCCCGCCAAAAATAATAAAACCCGACTGAGATTCATGCATTCCCAGCCAAAATTCGGCCAGAAATGCATGGTCTACTTCAATTTTTTTTTAAATTAAGCATTAAGCATTAAGCAGCTGCATGACCACTTTCGGTCAGGCAATCCTTTTTTTTTTTTAATTAAAAAAAATTAAGCATTAAGAAGCTTGCGACATATCTCTCTCTTTTTTAATGTTTTGAATAATTAAAAATTTCTTTATTATACTTAAAATTTAATTTTTTTTAACAAATTTGAAAAAAAAATTAAATTAAAAATAGGGGCTATAATAGTCTTTTTTACACTTTTGCTGACATCATTAAAGTCAGTAAAGGTCCCAATTAAGAGATTTAAAAAAGGGTAAAATACCTTTTTGGTCCCTCATGTTTCAATTTAGTTTTTAATAGGTCTCTAGGTTTCAAAATCGGACAATCAAGTCCCTACTATTTTAGAAATAGTTTTATTGAGTCCCTGGGTCGTTAGTTACTTAACGGAAGATGACGTGGCACCGTTTAAAAATAAAATAATTGTTTTTTAATTAAAATAATAATAATAAATTATTTTTTATTAGAATAATAAAAAAAATAAACAAAATTTTCACTTCTCTCCTCCCCCAATCGGTTCCCCTCCCACTTTCCCTTTCCCTTCCCTTCTCGCCGATGGCCCAACGCCACCACCTTCTTGTTCTTCTTCTTGTTCTTGTCGCCGCTGCCACCTCTTTTTTCTTCTTCTTCAAAATCACTGAACCCACCCCCTTCATTTTCTTCTTCTTATGGTTTTCACGAAAAGATCCCTCTCTCCCTCTCCTGATTTTATCTTCTTCTCTGATTTCTCGTTCTTTGGACTCTGAAAGCTAATATGTCTCTGTCGAAAGAAGAGAGAGGGAGAGGAACTCTGAAGCTTTTTTTCTTCTACATTTACATGAGTGGAAGGGTTTTCTGAGATTGAAAGATAATGGTGAGCAATACACTGGGGGATTTTCAGGACCATCTGAAATTGGCGAGGGAATACGCTCTTAAAGGACTGTATGTCACTTCAATCATCTTCTTTGATGGTGTTATAACTCAGATCAACAAGTAATCTATCTTCCCCATCTGACTTTTTCTTCCTAAACAAACCCCACTACCCCCATTTTCTCAACCCCCCCTCGTTTCTTCTTCCGTAGAATTTCAAAACCCAGATCTGATCAGGAAACCAAAAAAAAAAAAACGTAGCAACCGGCCAATTTCTTCTTCTTAAACAAAACTCCAAACCCATACCAAATACCCAAATCTAAAATAAAATCCAAACCCAACCCACCCCAAATCATCTTCTTCTTAAAAAAAAAGTAAACAGGAAACAAAACCCACCCCACACCGTAGCGATCGACAATAAGAGGCTGCGAGCGGCGGCGATGGCAAACAGCAGTGGCGGCGATGACAAAGGCAAGGAAGAGACGACGGCAAAAGAGGGAGAAAGACGAAGGGTTTCGGGGAGAGAGAATGGTTCTTTAAAATTTATTTAGTTATTTAATTATTATATTATTATGTTAATTTAAAAATTATTATTTTATTACTATTTTAATTTAAAAAATAATATTTTAATATTTTTAACGTGCCACGTCAGCACCGTTAAAAAAATTAATGGTTGAGGGACTTAATAGAACTATTTGAGAGGGACTTGATTGTTCGATTTTGAAACCTAAGAACCTATTAGAAAGATGAGAGACAAAACAATATTTTAAAAGTGCCCATTTTTACAAAAACAACAATGAAATGACCCTAAGTTCCAATTGTCCTGTTTCCCGGCCAGATTCTGGGATTTCGTTGGTTTTGCTCAAGTCTCCCACTCTAGCTGCAACATGCAAAATCGGGAGTCCATGA

mRNA sequence

ATGTGTGTACGATTCCTGGGTGTTGCTGAAGACAGAGAGGGTCCCCTAGTGAAGTTGTCTCCACCTAAAACAAGACTGTCGAGGGTTCCAAAGCCTAAGTCTCCTACAAAATGGGAACTTCTGGCTAAAAAACGAGGTATAAAGAACAGGAAAAAATACAATATTGTATATGATGAACAAACTCAAACATGGAAGCGTCGTCATGGTTATGATCGTGCAAATTATGAGGAGAACATACTCATCATTGAAGTCAGGATGACTGATGAGCAAGTTAGACAAGTTGAATTTGAGGAAAAAAATAATGCATGTGCAAATTGGCGCTTGAGACAGGCTATTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAAGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAGATTAATGCAGCCACAGGACCATCTGAAATTGGCGAGGGAATACGCTCTTAAAGGACTGTATGTCACTTCAATCATCTTCTTTGATGGTGTTATAACTCAGATCAACAAGAAACAAAACCCACCCCACACCGTAGCGATCGACAATAAGAGGCTGCGAGCGGCGGCGATGGCAAACAGCAGTGGCGGCGATGACAAAGGCAAGGAAGAGACGACGGCAAAAGAGGGAGAAAGACGAAGGGTTTCGGGGAGAGAGAATGATTCTGGGATTTCGTTGGTTTTGCTCAAGTCTCCCACTCTAGCTGCAACATGCAAAATCGGGAGTCCATGA

Coding sequence (CDS)

ATGTGTGTACGATTCCTGGGTGTTGCTGAAGACAGAGAGGGTCCCCTAGTGAAGTTGTCTCCACCTAAAACAAGACTGTCGAGGGTTCCAAAGCCTAAGTCTCCTACAAAATGGGAACTTCTGGCTAAAAAACGAGGTATAAAGAACAGGAAAAAATACAATATTGTATATGATGAACAAACTCAAACATGGAAGCGTCGTCATGGTTATGATCGTGCAAATTATGAGGAGAACATACTCATCATTGAAGTCAGGATGACTGATGAGCAAGTTAGACAAGTTGAATTTGAGGAAAAAAATAATGCATGTGCAAATTGGCGCTTGAGACAGGCTATTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAAGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAGATTAATGCAGCCACAGGACCATCTGAAATTGGCGAGGGAATACGCTCTTAAAGGACTGTATGTCACTTCAATCATCTTCTTTGATGGTGTTATAACTCAGATCAACAAGAAACAAAACCCACCCCACACCGTAGCGATCGACAATAAGAGGCTGCGAGCGGCGGCGATGGCAAACAGCAGTGGCGGCGATGACAAAGGCAAGGAAGAGACGACGGCAAAAGAGGGAGAAAGACGAAGGGTTTCGGGGAGAGAGAATGATTCTGGGATTTCGTTGGTTTTGCTCAAGTCTCCCACTCTAGCTGCAACATGCAAAATCGGGAGTCCATGA

Protein sequence

MCVRFLGVAEDREGPLVKLSPPKTRLSRVPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNNACANWRLRQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQDHLKLAREYALKGLYVTSIIFFDGVITQINKKQNPPHTVAIDNKRLRAAAMANSSGGDDKGKEETTAKEGERRRVSGRENDSGISLVLLKSPTLAATCKIGSP
Homology
[Close]
BLAST of Lag0039315 vs. NCBI nr
Match: XP_022961058.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKR
Sbjct: 59  EDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDE 141

[Close]
BLAST of Lag0039315 vs. NCBI nr
Match: KAG7023528.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKR
Sbjct: 68  EDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKR 127

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 128 RHGYDRANDEENIPIIEAKMTDE 150

[Close]
BLAST of Lag0039315 vs. NCBI nr
Match: KAG6589856.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKR
Sbjct: 59  EDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDE 141

[Close]
BLAST of Lag0039315 vs. NCBI nr
Match: XP_023515967.1 (ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515969.1 ribosome biogenesis regulatory protein homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKR
Sbjct: 59  EDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDE 141

[Close]
BLAST of Lag0039315 vs. NCBI nr
Match: XP_022144805.1 (ribosome biogenesis regulatory protein homolog [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 68/95 (71.58%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLV+L PPKTRL R   +PKPK PTKWEL AKKRGIKNRKK  I YDEQTQTWKR
Sbjct: 59  EDRDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNN 102
           RHGYDRAN EENI IIE +MTDE       E ++N
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDEPGMDPFAERQSN 153

[Close]
BLAST of Lag0039315 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           E  +GP+V+L PP T+L R   +P+PK PTKWE  A K+GI+ RKK  +V+DEQT  +KR
Sbjct: 63  ETNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKR 122

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDR N + ++ IIE + +DE
Sbjct: 123 RHGYDRVNDDNDVPIIEAKESDE 145

[Close]
BLAST of Lag0039315 vs. ExPASy Swiss-Prot
Match: Q501D2 (Protein IQ-DOMAIN 30 OS=Arabidopsis thaliana OX=3702 GN=IQD30 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 109 RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL 149
           RQA++TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L
Sbjct: 148 RQAVSTLCCVMGIVRLQALARGREIRHSDIGVEVQRKCHL 187

[Close]
BLAST of Lag0039315 vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 0 

Query: 13  EGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHG 72
           E  + +L  P TRL R   VP+P+  T+W+  A+ +GI+ +KK N+V+DE +  W+RR G
Sbjct: 86  EALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWG 145

Query: 73  YDRANYEENILIIEV-----RMTDEQVRQVEFEEKNNA 103
           Y RA  +    +IEV      M D+  ++++ +++  A
Sbjct: 146 YQRARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVA 183

[Close]
BLAST of Lag0039315 vs. ExPASy Swiss-Prot
Match: Q9XVT0 (Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis elegans OX=6239 GN=rrbs-1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-07
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 13  EGPLVKLSPPKTRL---SRVPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHG 72
           E  +V L P   RL    R+P+ K PTKWE  A ++GI+ RKK   V+DE T+ WK  +G
Sbjct: 62  EAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKPTYG 121

Query: 73  YDRANYEENILIIEVRMTDEQVRQVEFEEK 100
           Y R N +    +IE+    E   +  F E+
Sbjct: 122 YRRGNDDTKDWLIEIPDNAEDPNKDFFAER 151

[Close]
BLAST of Lag0039315 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-07
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 13  EGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHG 72
           E  + +L  P TRL R   +P+P+  T+W+  A+ +GI+ +KK N+V+DE +  W+RR G
Sbjct: 86  EAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWG 145

Query: 73  YDRANYEENILIIEV 85
           Y RA  +    +IEV
Sbjct: 146 YKRARDDTKEWLIEV 160

[Close]
BLAST of Lag0039315 vs. ExPASy TrEMBL
Match: A0A6J1JJT9 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111485227 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-27
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKR
Sbjct: 59  EDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDE 141

[Close]
BLAST of Lag0039315 vs. ExPASy TrEMBL
Match: A0A6J1CSP0 (Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111014399 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-27
Identity = 68/95 (71.58%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLV+L PPKTRL R   +PKPK PTKWEL AKKRGIKNRKK  I YDEQTQTWKR
Sbjct: 59  EDRDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNN 102
           RHGYDRAN EENI IIE +MTDE       E ++N
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDEPGMDPFAERQSN 153

[Close]
BLAST of Lag0039315 vs. ExPASy TrEMBL
Match: A0A6J1HAS5 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111461680 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-27
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKR
Sbjct: 59  EDRDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKR 118

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 119 RHGYDRANDEENIPIIEAKMTDE 141

[Close]
BLAST of Lag0039315 vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-25
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLV+L PP TRL R   +PKPK PTKWEL AKKRGIKNRKK  IVYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDE 143

[Close]
BLAST of Lag0039315 vs. ExPASy TrEMBL
Match: A0A6J1F066 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111440969 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-25
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           EDR+GPLV+L PP TRL R   +PKPK PTKWEL AKKRGIKNRKK  IVYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDRAN EENI IIE +MTDE
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDE 143

[Close]
BLAST of Lag0039315 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-19
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0 

Query: 10  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKR 69
           E  +GP+V+L PP T+L R   +P+PK PTKWE  A K+GI+ RKK  +V+DEQT  +KR
Sbjct: 63  ETNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKR 122

Query: 70  RHGYDRANYEENILIIEVRMTDE 90
           RHGYDR N + ++ IIE + +DE
Sbjct: 123 RHGYDRVNDDNDVPIIEAKESDE 145

[Close]
BLAST of Lag0039315 vs. TAIR 10
Match: AT1G18840.1 (IQ-domain 30 )

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 109 RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL 149
           RQA++TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L
Sbjct: 148 RQAVSTLCCVMGIVRLQALARGREIRHSDIGVEVQRKCHL 187

[Close]
BLAST of Lag0039315 vs. TAIR 10
Match: AT1G18840.2 (IQ-domain 30 )

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 109 RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL 149
           RQA++TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L
Sbjct: 148 RQAVSTLCCVMGIVRLQALARGREIRHSDIGVEVQRKCHL 187

[Close]
BLAST of Lag0039315 vs. TAIR 10
Match: AT1G80350.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-08
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 152 QDHLKLAREYALKGLYVTSIIFFDGVITQINKKQN 187
           QDHLKLAREYAL+G Y TS+IFFDG I QINK  N
Sbjct: 12  QDHLKLAREYALEGSYDTSVIFFDGAIAQINKHLN 46

[Close]
BLAST of Lag0039315 vs. TAIR 10
Match: AT1G74690.1 (IQ-domain 31 )

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 109 RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQDHLKLA 159
           RQA+ATL  ++GIV+ QA ARGR +R SD+G +V  KCRL   Q + KLA
Sbjct: 152 RQAVATLFSVMGIVRLQAFARGREIRKSDIGVQVYRKCRLQLLQGN-KLA 200

The following BLAST results are available for this feature:
BLAST of Lag0039315 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961058.11.2e-2679.52ribosome biogenesis regulatory protein homolog [Cucurbita moschata][more]
KAG7023528.11.2e-2679.52Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp... [more]
KAG6589856.11.2e-2679.52Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp... [more]
XP_023515967.11.2e-2679.52ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp.... [more]
XP_022144805.11.2e-2671.58ribosome biogenesis regulatory protein homolog [Momordica charantia][more]
BLAST of Lag0039315 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SH881.3e-1753.01Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G... [more]
Q501D21.1e-0865.00Protein IQ-DOMAIN 30 OS=Arabidopsis thaliana OX=3702 GN=IQD30 PE=1 SV=1[more]
Q2KIH41.2e-0734.69Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=... [more]
Q9XVT02.8e-0738.89Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis elegans OX=6239... [more]
Q9CYH62.8e-0740.00Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ... [more]
BLAST of Lag0039315 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JJT95.6e-2779.52Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114852... [more]
A0A6J1CSP05.6e-2771.58Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1HAS55.6e-2779.52Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1HW203.1e-2575.90Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671... [more]
A0A6J1F0663.1e-2575.90Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
BLAST of Lag0039315 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G37990.19.4e-1953.01ribosome biogenesis regulatory protein (RRS1) family protein [more]
AT1G18840.18.0e-1065.00IQ-domain 30 [more]
AT1G18840.28.0e-1065.00IQ-domain 30 [more]
AT1G80350.11.2e-0877.14P-loop containing nucleoside triphosphate hydrolases superfamily protein [more]
AT1G74690.12.8e-0756.00IQ-domain 31 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007023Ribosomal biogenesis regulatory proteinPFAMPF04939RRS1coord: 9..102
e-value: 8.7E-24
score: 84.2
IPR007023Ribosomal biogenesis regulatory proteinPANTHERPTHR17602RIBOSOME BIOGENESIS REGULATORY PROTEINcoord: 8..90
NoneNo IPR availableGENE3D1.20.58.80coord: 143..197
e-value: 1.2E-8
score: 36.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..231
NoneNo IPR availablePANTHERPTHR17602:SF5RIBOSOME BIOGENESIS REGULATORY PROTEINcoord: 8..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039315.1Lag0039315.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0042273 ribosomal large subunit biogenesis
biological_process GO:0000055 ribosomal large subunit export from nucleus
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005730 nucleolus
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005634 nucleus