Lag0039288 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039288
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr2: 40790401 .. 40791849 (+)
RNA-Seq Expression	Lag0039288
Synteny	Lag0039288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTAGGGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGAACGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCGAGGGAGTGTTACTGGACCGCACTAAAAGCTGTCAAGCCACAGAGGGCCGAGGCCGACCAGAGAATGAGCCGAGGCCGAGCAACACACACTTCCACCAATACTGAATCTGAACTTATGGAGTTTTAGGGTTTTTCGTTTATTGCATTCTATCGTGTAATTAGACATTGTTTACTTTGTTGCTGCCTCTAGTATAGGTTCAATGTTTTTTCTTCATTCAAAGTGTGAAAGTTTAATTAATAGCCTTACAGTTTCGCCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTTGCCTCATCCAGAGTGAGACCATGGGAGCCTGGACCAACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCCTGGACCGACGAGTCTAACTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCTTAGACCGGCGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTAGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATTCTCTGGCTTGAGCATCTTTACACTGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACTAGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAATGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCGTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCACCTAA

mRNA sequence

ATGCGGTTAGGGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGAACGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCGAGGGAGTGTTACTGGACCGCACTAAAAGCTGTCAAGCCACAGAGGGCCGAGGCCGACCAGAGAATGAGCCGAGGCCGAGCAACACACACTTCCACCAATACTGAATCTGAACTTATGGATTTCGCCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTTGCCTCATCCAGAGTGAGACCATGGGAGCCTGGACCAACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCCTGGACCGACGAGTCTAACTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATTCTCTGGCTTGAGCATCTTTACACTGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACTAGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAATGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCGTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCACCTAA

Coding sequence (CDS)

ATGCGGTTAGGGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGAACGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCGAGGGAGTGTTACTGGACCGCACTAAAAGCTGTCAAGCCACAGAGGGCCGAGGCCGACCAGAGAATGAGCCGAGGCCGAGCAACACACACTTCCACCAATACTGAATCTGAACTTATGGATTTCGCCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTTGCCTCATCCAGAGTGAGACCATGGGAGCCTGGACCAACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCCTGGACCGACGAGTCTAACTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATTCTCTGGCTTGAGCATCTTTACACTGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACTAGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAATGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCGTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCACCTAA

Protein sequence

MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALKAVKPQRAEADQRMSRGRATHTSTNTESELMDFAIKVQYSGVCTRQPTQASRHASLDYRVYLASSRVRPWEPGPTSLPHILWLEHLYTGRAWTVEVYLASSKVRPCEPGPTSLTHILWLEHLYTGRAWTVEVYLASSRVRPCEPGPTSLPHILWLEHLYTGRAWTAEVYLASSRTVEVYLASSRVRPCEPGPTSLPHILWLEHLYTGRAWTVEVYLASSRVRPCEPGPTSLPHILWLEHLYTRRAWTVEVYLASSRMRPCEPGPTSLPHLLWPEHRYTGRAWTAEVYLASSKVRPCEPGPTSLPHLT

Homology

[Close]

BLAST of Lag0039288 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-32
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG ++LK S  PLVGFGGERV PEG IE PVTFG G  +VTKM++ LVV+  S+YNAI
Sbjct: 139 MDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSSYNAI 198

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           LGRPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 199 LGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 245

[Close]

BLAST of Lag0039288 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 6.6e-32
Identity = 66/107 (61.68%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG E+LK SLTPL+GFGGER+ P+G IELP+TF     ++T+M++FLVVD  S+YN I
Sbjct: 92  MDLGEEVLKSSLTPLIGFGGERIIPKGRIELPITFRSEPKSITRMVDFLVVDYTSSYNTI 151

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           L RPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 152 LERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 198

[Close]

BLAST of Lag0039288 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-31
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG ++LK S  PLVGFGGERV  EG IELPVTFG G  +VTKM++FLVV+  S+YNAI
Sbjct: 92  MDLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           LGRPT+H +KAI STYHQ  KFPT  GVG +KGEQ+ SRECY T+++
Sbjct: 152 LGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMR 198

[Close]

BLAST of Lag0039288 vs. NCBI nr
Match: XP_022154102.1 (uncharacterized protein LOC111021438 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-31
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG+E LK SLTPL+GFGGERV P G IELPVTF  G  ++TKM++FLVVD  S+YNAI
Sbjct: 92  MDLGKEXLKSSLTPLIGFGGERVIPXGXIELPVTFESGPKSITKMVDFLVVDYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTAL 107
           L R T++ +KAI STYHQ +KFPTP GVG +KGEQ+  RECY+T +
Sbjct: 152 LERXTMYMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVXRECYYTXM 197

[Close]

BLAST of Lag0039288 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-31
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG   LK S  PLVGFGGE V PEG IELPVTFG G  ++TKM++FLVVD  S+ NAI
Sbjct: 149 MDLGERGLKSSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAI 208

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           LGRPT+H +KAI S YHQ +KFPTP G+G +KGEQ+ SRECY+ ++K
Sbjct: 209 LGRPTMHMLKAIPSRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMK 255

[Close]

BLAST of Lag0039288 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.5e-33
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG ++LK S  PLVGFGGERV PEG IE PVTFG G  +VTKM++ LVV+  S+YNAI
Sbjct: 139 MDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSSYNAI 198

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           LGRPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 199 LGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 245

[Close]

BLAST of Lag0039288 vs. ExPASy TrEMBL
Match: A0A6J1CZ14 (uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015901 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-32
Identity = 66/107 (61.68%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG E+LK SLTPL+GFGGER+ P+G IELP+TF     ++T+M++FLVVD  S+YN I
Sbjct: 92  MDLGEEVLKSSLTPLIGFGGERIIPKGRIELPITFRSEPKSITRMVDFLVVDYTSSYNTI 151

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           L RPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 152 LERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 198

[Close]

BLAST of Lag0039288 vs. ExPASy TrEMBL
Match: A0A6J1DQY2 (uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022321 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.1e-32
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG ++LK S  PLVGFGGERV  EG IELPVTFG G  +VTKM++FLVV+  S+YNAI
Sbjct: 92  MDLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           LGRPT+H +KAI STYHQ  KFPT  GVG +KGEQ+ SRECY T+++
Sbjct: 152 LGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMR 198

[Close]

BLAST of Lag0039288 vs. ExPASy TrEMBL
Match: A0A6J1DKR9 (uncharacterized protein LOC111021438 OS=Momordica charantia OX=3673 GN=LOC111021438 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-32
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG+E LK SLTPL+GFGGERV P G IELPVTF  G  ++TKM++FLVVD  S+YNAI
Sbjct: 92  MDLGKEXLKSSLTPLIGFGGERVIPXGXIELPVTFESGPKSITKMVDFLVVDYTSSYNAI 151

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTAL 107
           L R T++ +KAI STYHQ +KFPTP GVG +KGEQ+  RECY+T +
Sbjct: 152 LERXTMYMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVXRECYYTXM 197

[Close]

BLAST of Lag0039288 vs. ExPASy TrEMBL
Match: A0A6J1DAK4 (uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018902 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-31
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNAI 60
           M LG   LK S  PLVGFGGE V PEG IELPVTFG G  ++TKM++FLVVD  S+ NAI
Sbjct: 149 MDLGERGLKSSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAI 208

Query: 61  LGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 108
           LGRPT+H +KAI S YHQ +KFPTP G+G +KGEQ+ SRECY+ ++K
Sbjct: 209 LGRPTMHMLKAIPSRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMK 255

The following BLAST results are available for this feature:

BLAST of Lag0039288 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144467.1	1.3e-32	65.42	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022146774.1	6.6e-32	61.68	uncharacterized protein LOC111015901 [Momordica charantia]	[more]
XP_022155186.1	1.5e-31	66.36	uncharacterized protein LOC111022321 [Momordica charantia]	[more]
XP_022154102.1	1.9e-31	65.09	uncharacterized protein LOC111021438 [Momordica charantia]	[more]
XP_022150858.1	4.3e-31	64.49	uncharacterized protein LOC111018902 [Momordica charantia]	[more]

BLAST of Lag0039288 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0039288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTS4	6.5e-33	65.42	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1CZ14	3.2e-32	61.68	uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1DQY2	7.1e-32	66.36	uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DKR9	9.3e-32	65.09	uncharacterized protein LOC111021438 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DAK4	2.1e-31	64.49	uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Lag0039288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 2..67 e-value: 1.48764E-8 score: 50.0276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039288.1	Lag0039288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity