Lag0039283 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039283
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2: 40732774 .. 40733562 (-)
RNA-Seq Expression	Lag0039283
Synteny	Lag0039283

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTTGACAAACACGGAGGCTATTGAACCTACAGTCGATTCTGGTAATCAGTCGAATCAGATCATCAATCCTGGTAATAAATTTTCCACTGTTAAATTGAGCAATGACAATTTTCTGGTATGGAAAGTCCAAATTGAGTTTGCCCTAGAAGGACACAATTTGGAAATTTTATTAGTAAAGATTTTGATCCTCCTCCAGAGCGAGTTCTCATTAAAGAAGGATCAACTTTAACTAAAATGAATCCTGAATATATGAAATGGAAACGGCAAGATAGCTTAATTTCCTCTTGGTTGCTTGGCTCCATGTCTGAAAATATCTTAGAGCAAGTAATTCACTGTAAAACGGCGAGTGAGATCTGGAAGTGCCTTTTTCAGATCTTTAATTCATGGAACAGAGCACGGATCATGAGATTAAAAGTCCAAGTTGCAGACCTTACAAAAAGGATCAATGACACTGAATGACTACTTCTCACAAATTAAGAAGTGTATAGATTCCCTTGCTGTAGTAGGAAAAGTAGTTGACACTGAGGATCACATAATGTACATCTTAAATGGCCTAGGATCTGAATATGAGTCAATGATCTCTGTTTTATCGACTTCTACAAAACATCAGGAGGTTCAAGATGTTATGGCATTACTATTAACGCATGAAAACAGAATTGAGAGAAAACTTAAGGCTGTCAATTCAGATGGAACACCACCCTCAGCAAACCTGACGACACAAGGCCATAATAACAGTGATCATGATCCTCAGAAGGCAATGACTCAGTTTCATAACAATTAG

mRNA sequence

ATGGATTCTTTGACAAACACGGAGGCTATTGAACCTACAGTCGATTCTGGTAATCAGTCGAATCAGATCATCAATCCTGGTAATAAATTTTCCACTGTTAAATTGAGCAATGACAATTTTCTGACCTTACAAAAAGGATCAATGACACTGAATGACTACTTCTCACAAATTAAGAAGTGTATAGATTCCCTTGCTGTAGTAGGAAAAGTAGTTGACACTGAGGATCACATAATGTACATCTTAAATGGCCTAGGATCTGAATATGAGTCAATGATCTCTGTTTTATCGACTTCTACAAAACATCAGGAGGTTCAAGATGTTATGGCATTACTATTAACGCATGAAAACAGAATTGAGAGAAAACTTAAGGCTGTCAATTCAGATGGAACACCACCCTCAGCAAACCTGACGACACAAGGCCATAATAACAGTGATCATGATCCTCAGAAGGCAATGACTCAGTTTCATAACAATTAG

Coding sequence (CDS)

ATGGATTCTTTGACAAACACGGAGGCTATTGAACCTACAGTCGATTCTGGTAATCAGTCGAATCAGATCATCAATCCTGGTAATAAATTTTCCACTGTTAAATTGAGCAATGACAATTTTCTGACCTTACAAAAAGGATCAATGACACTGAATGACTACTTCTCACAAATTAAGAAGTGTATAGATTCCCTTGCTGTAGTAGGAAAAGTAGTTGACACTGAGGATCACATAATGTACATCTTAAATGGCCTAGGATCTGAATATGAGTCAATGATCTCTGTTTTATCGACTTCTACAAAACATCAGGAGGTTCAAGATGTTATGGCATTACTATTAACGCATGAAAACAGAATTGAGAGAAAACTTAAGGCTGTCAATTCAGATGGAACACCACCCTCAGCAAACCTGACGACACAAGGCCATAATAACAGTGATCATGATCCTCAGAAGGCAATGACTCAGTTTCATAACAATTAG

Protein sequence

MDSLTNTEAIEPTVDSGNQSNQIINPGNKFSTVKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHNNSDHDPQKAMTQFHNN

Homology

[Close]

BLAST of Lag0039283 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 43  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQ 102
           ++KG++ L DYF ++K  +DSLA  GK V  EDHIM+IL GL SE+ES +SV+S  T+ Q
Sbjct: 58  IKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQ 117

Query: 103 EVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHNNS 145
            +Q+V +LLL+HE R ER   ++N+DGT PS NLT Q  N++
Sbjct: 118 TLQEVYSLLLSHEGRNER--NSINTDGTLPSVNLTQQTKNSN 157

[Close]

BLAST of Lag0039283 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 43  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQ 102
           ++KG++ L DYF ++K  +DSLA  GK V  EDHIM+IL GL SE+ES +SV+S  T+ Q
Sbjct: 58  IKKGNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQ 117

Query: 103 EVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHNNS 145
            +Q+V +LLL+HE R ER   ++N+DGT PS NLT Q  N++
Sbjct: 118 TLQEVYSLLLSHEGRNER--NSINTDGTLPSVNLTQQTKNSN 157

[Close]

BLAST of Lag0039283 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 6.7e-17
Identity = 51/111 (45.95%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 43  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQ 102
           ++KG ++L +YF +I++C+D+LA + K + T+DHI+YIL GLG+EY+SMISV+S  T   
Sbjct: 284 MKKGVISLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSP 343

Query: 103 EVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHNNSDHDPQKAMT 154
            VQDVM+LLLT E++IE K   + S+ + P+ N+TT   + S    + A+T
Sbjct: 344 SVQDVMSLLLTQESQIESK---ITSEVSLPTVNMTTHARDISSLAKEDAVT 391

[Close]

BLAST of Lag0039283 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 6.7e-17
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 33  VKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMI 92
           +KL  +NF   +KG+++L DYF +IK  +DSLA+ GK + TEDHIM+IL GLG E++++I
Sbjct: 141 LKLKLENF---KKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDAII 200

Query: 93  SVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLT 138
           SV++     Q +Q+V +LLL  E R ER L  +NSDG+ PS NLT
Sbjct: 201 SVITARNMPQTLQEVCSLLLQQEGRNERNL--INSDGSLPSVNLT 240

[Close]

BLAST of Lag0039283 vs. NCBI nr
Match: KAA0046195.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-16
Identity = 48/111 (43.24%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 43  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQ 102
           ++KG+M+L +YF +I++C+D+LA + K + T+DHI+YIL GLG+EY+S+IS++S  T   
Sbjct: 125 MKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSP 184

Query: 103 EVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHNNSDHDPQKAMT 154
            VQD M+LLLT E++IE K   + S+ + P+ N+TT   + S  + +  +T
Sbjct: 185 SVQDNMSLLLTQESQIESK---ITSEVSLPTVNMTTHTRDISSLEKESEVT 232

The following BLAST results are available for this feature:

BLAST of Lag0039283 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136882.1	2.1e-18	51.96	dr1-associated corepressor homolog isoform X1 [Momordica charantia]	[more]
XP_022136883.1	2.1e-18	51.96	dr1-associated corepressor homolog isoform X2 [Momordica charantia]	[more]
KAA0045111.1	6.7e-17	45.95	putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236...	[more]
XP_022154487.1	6.7e-17	50.48	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0046195.1	4.3e-16	43.24	putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 p...	[more]

BLAST of Lag0039283 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 39..118 e-value: 5.7E-11 score: 42.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..158
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 42..146
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 42..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039283.1	Lag0039283.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0005488	binding