Lag0039254 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039254
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr2: 39926822 .. 39927576 (-)
RNA-Seq Expression	Lag0039254
Synteny	Lag0039254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCATTTTGTCTAAGAAACTGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGCCCTATGCAATAGGGATTGTCAGTAAGTACAAATCTAATCCAAGATTTGATCACTGGAAAACTGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAGGAACTATATGCTCGTGTATGGGACTAAGGACTTGGTGAATAGATGGAGGTCTTGGAAGTTAACGGAGGAGGAGGCGGAGAATGTGAAGTCGGGTGATGTGGCGTCGGTCTTACCTGAAGGATCGAGGGAGCTATGTATGGTGGGGAAGGTGCTCTCGTCGAAGCGTGTGAATATGGATGCTTTCCGAGATGTAATAAGAGCAGCGTGAAGAACACACGGGGCGACTCGGATAGAAGCGGTAAGGGATAATCTGTTTGCAGTTCAGTTTCGGTCTAAAGGGGAGAAGGTGAGAGTTATGTCGTCAGGGTCCTGGGCGTTTGATAGATCCCTTGTGATACTGAAGGATGCGTAGTCGGTCTCGTCAGTTTTAGATGTGGAGTTTAGGGAGTGCTCTTTCTGGGTCCAGATTCATAATGTTCCCATGCGATGGCAGATAGGGGGAATGGCAAAGCACTTGTAAGGGAAGATTGGGATAGTGGAGGAAAAAGGTGGGCCACAAGGAAGCGAGTGGACAAGACCAGTGTTGAGGCTGAGAGTGTGTCTGCGGGTAGATCGACCCCTCCAAAGAGGTTTCCAGATGCAGGATGA

mRNA sequence

ATGGAATTCATTTTGTCTAAGAAACTGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGCCCTATGCAATAGGGATTGTCAGTAAGTACAAATCTAATCCAAGATTTGATCACTGGAAAACTGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAGGAACTATATGCTCGTGTATGGGACTAAGGACTTGGTGAATAGATGGAGGTCTTGGAAGTTAACGGAGGAGGAGGCGGAGAATGTGAAGTCGGGTGATGTGGCGTCGGTCTTACCTGAAGGATCGAGGGAGCTATGTATGGTGGGGAAGGTGCTCTCGTCGAAGCGTGTGAATATGGATGCTTTCCGAGATTTTCGGTCTAAAGGGGAGAAGGTGAGAGTTATGTCGTCAGGGTCCTGGGCGTTTGATAGATCCCTTGTGATACTGAAGGATGCGGGGAATGGCAAAGCACTTGTAAGGGAAGATTGGGATAGTGGAGGAAAAAGGTGGGCCACAAGGAAGCGAGTGGACAAGACCAGTGTTGAGGCTGAGAGTGTGTCTGCGGGTAGATCGACCCCTCCAAAGAGGTTTCCAGATGCAGGATGA

Coding sequence (CDS)

ATGGAATTCATTTTGTCTAAGAAACTGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGCCCTATGCAATAGGGATTGTCAGTAAGTACAAATCTAATCCAAGATTTGATCACTGGAAAACTGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAGGAACTATATGCTCGTGTATGGGACTAAGGACTTGGTGAATAGATGGAGGTCTTGGAAGTTAACGGAGGAGGAGGCGGAGAATGTGAAGTCGGGTGATGTGGCGTCGGTCTTACCTGAAGGATCGAGGGAGCTATGTATGGTGGGGAAGGTGCTCTCGTCGAAGCGTGTGAATATGGATGCTTTCCGAGATTTTCGGTCTAAAGGGGAGAAGGTGAGAGTTATGTCGTCAGGGTCCTGGGCGTTTGATAGATCCCTTGTGATACTGAAGGATGCGGGGAATGGCAAAGCACTTGTAAGGGAAGATTGGGATAGTGGAGGAAAAAGGTGGGCCACAAGGAAGCGAGTGGACAAGACCAGTGTTGAGGCTGAGAGTGTGTCTGCGGGTAGATCGACCCCTCCAAAGAGGTTTCCAGATGCAGGATGA

Protein sequence

MEFILSKKLFPETPQEVEDMRRMPYAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLVNRWRSWKLTEEEAENVKSGDVASVLPEGSRELCMVGKVLSSKRVNMDAFRDFRSKGEKVRVMSSGSWAFDRSLVILKDAGNGKALVREDWDSGGKRWATRKRVDKTSVEAESVSAGRSTPPKRFPDAG

Homology

[Close]

BLAST of Lag0039254 vs. NCBI nr
Match: TYJ99632.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-16
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  P+TPQEVEDMRR+P                    YA+GIVS+Y+SNPR DHW  
Sbjct: 595 LSKEQCPKTPQEVEDMRRIPYASAVGSLMYVMLCTMSDICYAVGIVSRYQSNPRLDHWTV 654

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR RNYMLVYG KDL+
Sbjct: 655 VKIILKYLRRTRNYMLVYGAKDLI 678

[Close]

BLAST of Lag0039254 vs. NCBI nr
Match: TYJ99758.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-15
Identity = 49/84 (58.33%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW T
Sbjct: 632 LSKEQCPETPQEVEDMRRIPYASTVDSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT 691

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR R YMLVYG KDL+
Sbjct: 692 VKIILKYLRRTRYYMLVYGAKDLI 715

[Close]

BLAST of Lag0039254 vs. NCBI nr
Match: KAA0039044.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-15
Identity = 49/84 (58.33%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW T
Sbjct: 235 LSKEQCPETPQEVEDMRRIPYASTVDSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT 294

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR R YMLVYG KDL+
Sbjct: 295 VKIILKYLRRTRYYMLVYGAKDLI 318

[Close]

BLAST of Lag0039254 vs. NCBI nr
Match: KAA0061927.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-15
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKT 64
           LSKK  P+TPQEVEDMR++PYA                    + +VS+Y+SNPR DHW  
Sbjct: 191 LSKKQCPKTPQEVEDMRKIPYASVIGSLMYAMLCTRPDICFLVRMVSRYQSNPRRDHWTV 250

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VKNILKYLRR ++YMLVYGTKDL+
Sbjct: 251 VKNILKYLRRTKDYMLVYGTKDLI 274

[Close]

BLAST of Lag0039254 vs. NCBI nr
Match: TYK24002.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-15
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKT 64
           LSKK  P+TPQEVEDMR++PYA                    + +VS+Y+SNPR DHW  
Sbjct: 191 LSKKQCPKTPQEVEDMRKIPYASVIGSLMYAMLCTRPDICFLVRMVSRYQSNPRRDHWTV 250

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VKNILKYLRR ++YMLVYGTKDL+
Sbjct: 251 VKNILKYLRRTKDYMLVYGTKDLI 274

[Close]

BLAST of Lag0039254 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.8e-05
Identity = 28/82 (34.15%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 5    LSKKLFPETPQEVEDMRRMPY--------------------AIGIVSKYKSNPRFDHWKT 64
            LSKK+ P T +E  +M ++PY                    A+G+VS++  NP  +HW+ 
Sbjct: 1091 LSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEA 1150

Query: 65   VKNILKYLRRKRNYMLVYGTKD 67
            VK IL+YLR      L +G  D
Sbjct: 1151 VKWILRYLRGTTGDCLCFGGSD 1172

[Close]

BLAST of Lag0039254 vs. ExPASy TrEMBL
Match: A0A5D3BIR3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00020 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  P+TPQEVEDMRR+P                    YA+GIVS+Y+SNPR DHW  
Sbjct: 595 LSKEQCPKTPQEVEDMRRIPYASAVGSLMYVMLCTMSDICYAVGIVSRYQSNPRLDHWTV 654

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR RNYMLVYG KDL+
Sbjct: 655 VKIILKYLRRTRNYMLVYGAKDLI 678

[Close]

BLAST of Lag0039254 vs. ExPASy TrEMBL
Match: A0A5D3BNP0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00370 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 49/84 (58.33%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW T
Sbjct: 632 LSKEQCPETPQEVEDMRRIPYASTVDSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT 691

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR R YMLVYG KDL+
Sbjct: 692 VKIILKYLRRTRYYMLVYGAKDLI 715

[Close]

BLAST of Lag0039254 vs. ExPASy TrEMBL
Match: A0A5A7T6C7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001350 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 49/84 (58.33%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW T
Sbjct: 235 LSKEQCPETPQEVEDMRRIPYASTVDSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT 294

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR R YMLVYG KDL+
Sbjct: 295 VKIILKYLRRTRYYMLVYGAKDLI 318

[Close]

BLAST of Lag0039254 vs. ExPASy TrEMBL
Match: A0A5A7V4T1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002110 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKT 64
           LSKK  P+TPQEVEDMR++PYA                    + +VS+Y+SNPR DHW  
Sbjct: 191 LSKKQCPKTPQEVEDMRKIPYASVIGSLMYAMLCTRPDICFLVRMVSRYQSNPRRDHWTV 250

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VKNILKYLRR ++YMLVYGTKDL+
Sbjct: 251 VKNILKYLRRTKDYMLVYGTKDLI 274

[Close]

BLAST of Lag0039254 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 5   LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKT 64
           LSK+  P+TPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW T
Sbjct: 153 LSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT 212

Query: 65  VKNILKYLRRKRNYMLVYGTKDLV 69
           VK ILKYLRR R+YMLVYG KDL+
Sbjct: 213 VKIILKYLRRTRDYMLVYGAKDLI 236

The following BLAST results are available for this feature:

BLAST of Lag0039254 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99632.1	5.4e-16	58.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ99758.1	2.7e-15	58.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0039044.1	2.7e-15	58.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061927.1	3.5e-15	55.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK24002.1	3.5e-15	55.95	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0039254 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.8e-05	34.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Lag0039254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIR3	2.6e-16	58.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G0002...	[more]
A0A5D3BNP0	1.3e-15	58.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G0037...	[more]
A0A5A7T6C7	1.3e-15	58.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00135...	[more]
A0A5A7V4T1	1.7e-15	55.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00211...	[more]
A0A5A7V1F5	1.7e-15	57.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039254.1	Lag0039254.1	mRNA