Lag0039231 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039231
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr2: 39530280 .. 39531903 (+)
RNA-Seq Expression	Lag0039231
Synteny	Lag0039231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCAAGGGAGTGTTACTGGACCGCACTGAAAGCAGTCAAGCCACAGAGGGCCGAGGCCGAGCAGCACACACTTCCACCAATACTGAATCTGAACTTATGGAGTTTTAGGGTTTTTCGTTTATTGCATTCTATCATGTAATTAGACATTATTTACTTTGTTTCTGCCTCTAGTATAGGTTGAGTGTTTTTTCTTCATTCAAAGTGTGAAAGTTTAATTAATAGCCTACAGTTTCACCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTAGACTACCGAGTCTACCTCGCCTCATCCAGATTGAGATAACGTGAGCCTGGACCAACGAGTCTACCTCACCTCATCTGGCTTGAGCATCTTCACATCAGGCGAGCCTGGGCCCCTGGGTCTATCTCGCCTCATCCAGATTGAGATTATGTGAGCCTGGACGGACGAGTCTACCTCACCTCATCTGGCTTGAGCAACTTCACATCAAGCGAGCCTAGACTACCGAGTCTACCTCGCCTCATCCAGATTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCATCTGGCTTGAGCATCTCCACATCAGGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCAGATTGAGATTACGTGAGCTTGGAGCGACGAGTCTACCTCACCTCACTTGGCCTAAGCATCTTCACATCGGGCGAGCCTGGGCTACCGAGTCCACCTCGCGTCATCTAGACTTGAGATTGCATGAGCCTGGACCACTGAGTCTACCACACCTCGTCTGGCTCACCTGGCTGAGGCAGAAACCGAGCACCTCTTGCCAAGGCCAAGGACCTCTTGCCAAGACCGAGCACCTCTTGTCGAGGCCGAGCACAAACTTCAAAGGTATTCTCCTATTTACTCAACTATACTTTATGTTTTAGTGAAGTTCTACTTGAGACTGAGGGCTACAAAGGGGATATGCACTCTCTATTAAACAAAAAACAAGTAACAGGGGATATGCACTCCCTATTAAACAAAAAGCACACAGGTTTAGCATGTTCTATTCAAATTTACATGCCCAAACCTATTCTCTTACTATTTTCCTACAAGGACTAATAAATGGATGCAGGGGGCCAAATTTTAGGCTAACAAGGGCTTGAGGCCGAGGCCGACCCTAGCCTCTTCCCTAACTTTTCTCTTGCAGACACGACCCTGGATCTGGAATGAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGAGCAAAATTACAAAATGGGATGCTCGGCCTCATCTCGAGGCCGAGGCCGAGGCTTGATAGATCACATAGGCCCTCTGGCCACTTTCGTAAGATCTCACCTTTCTCATTTCCATTTCACCTAACCCCTATTCAGGGAGTGTCTACTTTGTGCATTCCTATCCTATTTTGCAGGATGGTGATAAAGCTGCACATAGGTCAGCACAAGGCAAGGATTATTACTCTTAA

mRNA sequence

ATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCAAGGGAGTGTTACTGGACCGCACTGAAAGCAGTCAAGCCACAGAGGGCCGAGGCCGAGCAGCACACACTTCCACCAATACTGAATCTGAACTTATGGAGTTTTAGGGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCAGATTGAGATTACGTGAGCTTGGAGCGACGAGTCTACCTCACCTCACTTGGCCTAAGCATCTTCACATCGGGCGAGCCTGGGCTACCGAGTCCACCTCGCGTCATCTAGACTTGAGATTGCATGAGCCTGGACCACTGAGTCTACCACACCTCGTCTGGCTCACCTGGCTGAGGCAGAAACCGAGCACCTCTTGCCAAGGCCAAGGACCTCTTGCCAAGACCGAGCACCTCTTGTCGAGGCCGAGCACAAACTTCAAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGAGCAAAATTACAAAATGGGATGCTCGGCCTCATCTCGAGGCCGAGGCCGAGGCTTGATAGATCACATAGGCCCTCTGGCCACTTTCGATGGTGATAAAGCTGCACATAGGTCAGCACAAGGCAAGGATTATTACTCTTAA

Coding sequence (CDS)

ATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCAAGGGAGTGTTACTGGACCGCACTGAAAGCAGTCAAGCCACAGAGGGCCGAGGCCGAGCAGCACACACTTCCACCAATACTGAATCTGAACTTATGGAGTTTTAGGGCGAGCCTGGACTACCGAGTCTACCTCGCCTCATCCAGATTGAGATTACGTGAGCTTGGAGCGACGAGTCTACCTCACCTCACTTGGCCTAAGCATCTTCACATCGGGCGAGCCTGGGCTACCGAGTCCACCTCGCGTCATCTAGACTTGAGATTGCATGAGCCTGGACCACTGAGTCTACCACACCTCGTCTGGCTCACCTGGCTGAGGCAGAAACCGAGCACCTCTTGCCAAGGCCAAGGACCTCTTGCCAAGACCGAGCACCTCTTGTCGAGGCCGAGCACAAACTTCAAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGAGCAAAATTACAAAATGGGATGCTCGGCCTCATCTCGAGGCCGAGGCCGAGGCTTGATAGATCACATAGGCCCTCTGGCCACTTTCGATGGTGATAAAGCTGCACATAGGTCAGCACAAGGCAAGGATTATTACTCTTAA

Protein sequence

MSAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALKAVKPQRAEAEQHTLPPILNLNLWSFRASLDYRVYLASSRLRLRELGATSLPHLTWPKHLHIGRAWATESTSRHLDLRLHEPGPLSLPHLVWLTWLRQKPSTSCQGQGPLAKTEHLLSRPSTNFKALRMTKYGGLAEQNYKMGCSASSRGRGRGLIDHIGPLATFDGDKAAHRSAQGKDYYS

Homology

[Close]

BLAST of Lag0039231 vs. NCBI nr
Match: XP_022156175.1 (uncharacterized protein LOC111023128 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-13
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALKAVK 58
           SAYNAILGRP +HE++ + STYHQ++K+PTP GV ++KGEQK SRECY TALK  +
Sbjct: 238 SAYNAILGRPYIHELQVVPSTYHQVMKYPTPCGVEIIKGEQKASRECYATALKGTR 293

[Close]

BLAST of Lag0039231 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-13
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YNAILGRPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 193 SSYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 245

[Close]

BLAST of Lag0039231 vs. NCBI nr
Match: XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 8.7e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YNAILGR T+H +KAI STYHQ +KFPTP GVG +KGEQ+ SRECY+T++K
Sbjct: 208 SSYNAILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMK 260

[Close]

BLAST of Lag0039231 vs. NCBI nr
Match: RWW62715.1 (hypothetical protein BHE74_00030137, partial [Ensete ventricosum])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-12
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALKAVKPQRA 61
           SAYNAI+GRPTL+ ++A+ STYH++LKFPT  GVG V+ + KESR+CY TA    K  RA
Sbjct: 241 SAYNAIIGRPTLNRLRAVVSTYHRILKFPTRAGVGEVRSDPKESRQCYLTATTLCKKPRA 300

Query: 62  EAEQHTLP 70
           E    T P
Sbjct: 301 EPIDATPP 308

[Close]

BLAST of Lag0039231 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-12
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YNAILGRPT+H +KAI STYHQ  KFPT  GVG +KGEQ+ SRECY T+++
Sbjct: 146 SSYNAILGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMR 198

[Close]

BLAST of Lag0039231 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YNAILGRPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 193 SSYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 245

[Close]

BLAST of Lag0039231 vs. ExPASy TrEMBL
Match: A0A6J1DPJ9 (uncharacterized protein LOC111023128 OS=Momordica charantia OX=3673 GN=LOC111023128 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALKAVK 58
           SAYNAILGRP +HE++ + STYHQ++K+PTP GV ++KGEQK SRECY TALK  +
Sbjct: 238 SAYNAILGRPYIHELQVVPSTYHQVMKYPTPCGVEIIKGEQKASRECYATALKGTR 293

[Close]

BLAST of Lag0039231 vs. ExPASy TrEMBL
Match: A0A6J1DQL9 (uncharacterized protein LOC111022905 OS=Momordica charantia OX=3673 GN=LOC111022905 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YNAILGR T+H +KAI STYHQ +KFPTP GVG +KGEQ+ SRECY+T++K
Sbjct: 208 SSYNAILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMK 260

[Close]

BLAST of Lag0039231 vs. ExPASy TrEMBL
Match: A0A6J1DQY2 (uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022321 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-12
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YNAILGRPT+H +KAI STYHQ  KFPT  GVG +KGEQ+ SRECY T+++
Sbjct: 146 SSYNAILGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMR 198

[Close]

BLAST of Lag0039231 vs. ExPASy TrEMBL
Match: A0A6J1CZ14 (uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015901 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-12
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 2   SAYNAILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALK 55
           S+YN IL RPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRECY+T+++
Sbjct: 146 SSYNTILERPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMR 198

The following BLAST results are available for this feature:

BLAST of Lag0039231 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156175.1	3.0e-13	66.07	uncharacterized protein LOC111023128 [Momordica charantia]	[more]
XP_022144467.1	3.0e-13	67.92	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022155902.1	8.7e-13	69.81	uncharacterized protein LOC111022905 [Momordica charantia]	[more]
RWW62715.1	5.7e-12	57.35	hypothetical protein BHE74_00030137, partial [Ensete ventricosum]	[more]
XP_022155186.1	5.7e-12	67.92	uncharacterized protein LOC111022321 [Momordica charantia]	[more]

BLAST of Lag0039231 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0039231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTS4	1.5e-13	67.92	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DPJ9	1.5e-13	66.07	uncharacterized protein LOC111023128 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DQL9	4.2e-13	69.81	uncharacterized protein LOC111022905 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DQY2	2.7e-12	67.92	uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CZ14	3.6e-12	64.15	uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Lag0039231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039231.1	Lag0039231.1	mRNA