Lag0039226 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039226
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Locationchr2: 39414483 .. 39417063 (+)
RNA-Seq ExpressionLag0039226
SyntenyLag0039226
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATGGTAGACCAAGGGTAAAATTTTGGACTTCTAGAGGATTAAGGCAAGGGGACCCATTGTCTCCTTTCTTTTTCACTATTGTAGCAGATTCGTTTAGTTGCTCTATTGACTTGGCTATGAAAAAGGTTTTCTTCATGGTTTCAAGATTGGTAAAGAGGAGTTCGACGTTCCTCACATCTAATTTGTTGACAATACTCTTTTCTTTAGTGAAGGATGGAAACCATCAGATGGTGGAGAATTGACAAACCTTTTTGAATTTCTTTGAACAGGCTTTGGGCCTTTTTGTTAACTTACGGAAGACTACCATAATAGGCTTGAATATTGGCACGGAGGAGCGTGTTAAGATGCCGAATTTGACAGGCTGTAAGGCTGAAGGCTTTGCCCTAGTTATCTGGGGTGAGTGTGGGAGGCAAGCCTAGGAATGAATCCTTTTGGGACCCTGTGTACGACAAAATTTGGAGTAAACAGGCAGTTTGTAGGGGCTTTCCTATCGTTAAAGGTGGTAGATCGCAAAAAAAGTGGAGAAAGTTTTTAGAAATTTCTTGTGGGGGGGGGGGGGGGGGGGGGGGTTTGTTAAAGGGTAGTCACATGGTGAATTTGGCCATAGCAACCGGTCTTTTGGTTGGGGGTTGGGGATTGACAACTTAAGGGCAAATAACTTAACTCTTTTAACTAAATGGCTTTGATGCTTTGAAAAGGACAAGTCAACATTGTGGGAGAGTGGTGGTCAACAGTAAATTTGGGAATTCTTTCTTTTGAAACCCCATTGTGCCCATTGTGCATAGGCAGTGGAAAGCTTTGTGTGGCCCCTTGAAGGATATAGCAAAAGTGGCTAGCTTTTTCTAGGAAAACAACAAATTCGAAGTGGGAAAGAGTGATATGGTTTTATTCTGGAGTGATAGGTGGCTAATCAATTGTCCTCTCAAACAATTGTTCCTCAGCGTGTTTAAAGCTTCATTGGCTCAAGATAGGACGGTGAAGGAGATGTGGAATTGGCTCTACTTGGGACCTTGGATTGCAAAGGGGTTGCTTCGACAGAGGTGGAGTGGTCTAACCTGTTTGCACTTTTGGAGGAGGCTACATTGTTGGAAAGGAGGATGTCCTGCTTTGGAATTTAGAAGTTTCAGGTTTGTTCTCAGTTAAGTTAGATTTAGTAGCTCTCTAAGAGAAAAGAAAGGTGTTAAAGGAAGAGTTGTGCTTTTAGATTTGGGATGCTTTTATCCCTTTGTCCCCTACGCTGTTTTCTTGGTTGTGACTTCTGAATTAAGTTCTCTATGTTTCTTATAAAAAAAATGTTATTAGGGTATTATGAATACATTAGTAATTAGTTAGGAAGGTTGTCAGGGTATTTGGTTATAAATAGATGAAGTGGGAAAGGAATAAGTTAGACATTGATCCAGTAACAAGAAAGGGGAGGTTCCAAGTACCTCAAATACTTAGGGGAGTGGTATTGCAATTCCATTACTATTTACACTTCAATGCATTTGGGTTCTACCCATTGGTATCTGAGCAGTTTCGTTCTGGCCATGGGGTTGGTTGTGAATTTATGTGTAGAGGTATTGGAAGATTTTATGTGAAGAAATGAACCAATTGAAGAATCAATTGGAGGAGCAAATGAACTTGATGTTCCAATTTATATGGGATAGAATGGCGTAGAGTTTTTGGATAGATTAGAGAAGACTGCAACAATACAAAGAGAGAAGACTGCAATAATACACGGAGATTAGATTAACAAAAACGAAGAGACAATATCTCATGTAGTAAGAATTAAGAAATTGAAGGCATGAAATTGAGGATACTAAGAAGGTTACTGATCAAGAGGGTGAGATAGCTACAAAGAAGGAAGAATCATCGGAATCCTAAGAAAAGAACCAAGACAGAGAGGAGAAGTTGATGAAGAAACATAGAAAGAATCGATTAAGGAAGCATGGGGCTATAAGGAAGCAAATGAGAGCATGCAAAAGGGATGAATGAATCAAAAGCATGGCTGTTGGAAGAAACCAATGAAGATGAAATGTGGAGGAGGATCGATTATCTTCTGTTATTCAAAAACCTTGCGTGAAGGGGCTGGGAGGGCATTTAAAGCAACAAAGGGGAGATGTCCATGTGCAAAGTGAGGTTAATGTCAGGTTGTTGCTACTATTGTTGGAGGTGAAAACTTGGTGCTGATACCGACGCAAGAGTAGTGAAAAGGCGGTAGTGGGATTGGAGGAGGCCAATCACGAAGAAAGAAATATGGGCAGAAGCAACTAACCTTAACCACGTGGGCTAAATACCTTTCAATGTGCTATATTTAAATGAATTGGTGGAGGCCCCTTTGCTTACAATGGTAGAAAAGAACGTTGTTATATCATATGGATTTTGGGCTGGGATCTTCTATTTTTAAACCCAGAATCCAACTCAGCTTGGTGTGGTTCTACCCACAGGGCAACCCTAGCTGCCACAAGAAACCCTCCATTTGTTTTTCTTGTACGCTGTCAAACACCCCAGTTGCCTATCCTTGACCACTGCCCATTGTTGTACTTTGCTGTCTACTGTCGATCACCATCGCCAGCCACCGTCTGCCGCCGATAG

mRNA sequence

ATGATCAATGGTAGACCAAGGGTAAAATTTTGGACTTCTAGAGGATTAAGGCAAGGGGACCCATTGTCTCCTTTCTTTTTCACTATTGTAGCAGATTCGTTTAGTTGCTCTATTGACTTGGCTATGAAAAAGGTTTTCTTCATGGTTTCAAGATTGGCTTTGGGCCTTTTTGTTAACTTACGGAAGACTACCATAATAGGCTTGAATATTGGCACGGAGGAGCGTGTTAAGATGCCGAATTTGACAGGCTGTAAGGCTGAAGGCTTTGCCCTAGTTATCTGGGATAGGACGGTGAAGGAGATGTGGAATTGGCTCTACTTGGGACCTTGGATTGCAAAGGGGTTGCTTCGACAGAGGTGGAGTGGTCTAACCTGTTTGCACTTTTGGAGGAGGCTACATTGTTGGAAAGGAGGATGTCCTGCTTTGGAATTTAGAAGTTTCAGTTTCGTTCTGGCCATGGGGTTGGTTGTGAATTTATGTGTAGAGGGGCTGGGAGGGCATTTAAAGCAACAAAGGGGAGATGTCCATGTGCAAAGTGAGGTTAATGTCAGGGCAACCCTAGCTGCCACAAGAAACCCTCCATTTGTTTTTCTTGTACGCTGTCAAACACCCCAGTTGCCTATCCTTGACCACTGCCCATTGTTGTACTTTGCTGTCTACTGTCGATCACCATCGCCAGCCACCGTCTGCCGCCGATAG

Coding sequence (CDS)

ATGATCAATGGTAGACCAAGGGTAAAATTTTGGACTTCTAGAGGATTAAGGCAAGGGGACCCATTGTCTCCTTTCTTTTTCACTATTGTAGCAGATTCGTTTAGTTGCTCTATTGACTTGGCTATGAAAAAGGTTTTCTTCATGGTTTCAAGATTGGCTTTGGGCCTTTTTGTTAACTTACGGAAGACTACCATAATAGGCTTGAATATTGGCACGGAGGAGCGTGTTAAGATGCCGAATTTGACAGGCTGTAAGGCTGAAGGCTTTGCCCTAGTTATCTGGGATAGGACGGTGAAGGAGATGTGGAATTGGCTCTACTTGGGACCTTGGATTGCAAAGGGGTTGCTTCGACAGAGGTGGAGTGGTCTAACCTGTTTGCACTTTTGGAGGAGGCTACATTGTTGGAAAGGAGGATGTCCTGCTTTGGAATTTAGAAGTTTCAGTTTCGTTCTGGCCATGGGGTTGGTTGTGAATTTATGTGTAGAGGGGCTGGGAGGGCATTTAAAGCAACAAAGGGGAGATGTCCATGTGCAAAGTGAGGTTAATGTCAGGGCAACCCTAGCTGCCACAAGAAACCCTCCATTTGTTTTTCTTGTACGCTGTCAAACACCCCAGTTGCCTATCCTTGACCACTGCCCATTGTTGTACTTTGCTGTCTACTGTCGATCACCATCGCCAGCCACCGTCTGCCGCCGATAG

Protein sequence

MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLAMKKVFFMVSRLALGLFVNLRKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLGPWIAKGLLRQRWSGLTCLHFWRRLHCWKGGCPALEFRSFSFVLAMGLVVNLCVEGLGGHLKQQRGDVHVQSEVNVRATLAATRNPPFVFLVRCQTPQLPILDHCPLLYFAVYCRSPSPATVCRR
Homology
[Close]
BLAST of Lag0039226 vs. NCBI nr
Match: GEX03388.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-09
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 0 

Query: 1   MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFS-CSID--LAMKKVFFMVSRLALGLF 60
           ++NG P  +F   RGLRQGDPLSPF F +V + ++ C +D  + +  VF+    LA GL 
Sbjct: 22  LVNGSPTSEFSLKRGLRQGDPLSPFLFIMVMEEWNQCDMDNIIRIPDVFY----LAFGLK 81

Query: 61  VNLRKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLGPWIAKGLLR 120
           +N+ K+ + G+ + +EE  +MP  TGC +                 + YLG  I   + R
Sbjct: 82  ININKSNLYGVGVSSEEVTQMPEGTGCSSSSIP-------------FTYLGLPIGSNMGR 141

Query: 121 -QRWSGLTCLHFWRRLHCWK 137
              WS +    F  RL  WK
Sbjct: 142 ISNWS-ILIDQFKARLSGWK 143

[Close]
BLAST of Lag0039226 vs. NCBI nr
Match: RVW94282.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-09
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 1   MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLAMKKVFFMVSRLALGLFVNL 60
           ++NG  +    TSRGLRQGDPLSPF FTIVAD  S  +  A +KV + VS     L VNL
Sbjct: 712 LVNGNAKGLVKTSRGLRQGDPLSPFLFTIVADVLSRMMLRAEEKVCWRVSGQISELKVNL 771

Query: 61  RKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLG 109
            K+ I G+N+  +   ++  L  CKA               W+ LYLG
Sbjct: 772 DKSNIFGINLDQDHLSRLALLLDCKASD-------------WSILYLG 806

[Close]
BLAST of Lag0039226 vs. NCBI nr
Match: GFC10292.1 (protein kinase-like domain, beta-lactamase/transpeptidase-like protein [Tanacetum cinerariifolium])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 0 

Query: 1   MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLAMKKVFFMVSRLALGLFVNL 60
           ++NG P V+F   RG+RQGDPLSPF F + A+  +  +   ++KV         GL VN 
Sbjct: 4   LVNGSPTVEFGLERGVRQGDPLSPFLFILAAEGLNVIVSEVVEKV-------VSGLKVNY 63

Query: 61  RKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLG-PW 111
            K+ + GL +   E ++M    GC  + F        ++E    L LG PW
Sbjct: 64  NKSKVYGLGVSDRELLEMARWMGCGIKEFPFTYLGLPIRENMGRLKLGAPW 107

[Close]
BLAST of Lag0039226 vs. NCBI nr
Match: GEU60505.1 (mannan endo-1,4-beta-mannosidase 6 isoform X1 [Tanacetum cinerariifolium])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 48/144 (33.33%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 1    MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLA-------MKKVFFMVSRLA 60
            +ING P  +F T  GLRQGDPLSPF F +V +   C++  A       + +V + V  LA
Sbjct: 1853 LINGSPTSEFSTKHGLRQGDPLSPFLFILVMEGLHCAMSNANPHDIDNIIRVLY-VFHLA 1912

Query: 61   LGLFVNLRKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLGPWIAK 120
             GL +N+ K+ I G+ +  +E   M + TGC A  F              + YLG  +  
Sbjct: 1913 SGLKINIHKSNIFGIGVTNDEISSMASRTGCAAGCF-------------RFTYLGLLVGA 1972

Query: 121  GL-LRQRWSGLTCLHFWRRLHCWK 137
             + L   W  +    F +RL  WK
Sbjct: 1973 NMNLTSSWQ-ILIDRFQKRLSSWK 1981

[Close]
BLAST of Lag0039226 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-08
Identity = 44/125 (35.20%), Postives = 59/125 (47.20%), Query Frame = 0 

Query: 2   INGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSID----------LAMKKVFFMVSR 61
           INGRPR K + +RGLRQGDPLSPF FT++ DSFS  ++           A+ +   +VS 
Sbjct: 37  INGRPRGKIFATRGLRQGDPLSPFLFTLIGDSFSRLVNFCCERRIIQGFAVGRERIVVSH 96

Query: 62  L-----------------------------ALGLFVNLRKTTIIGLNIGTEERVKMPNLT 88
           L                               GL +NL KT++IG+NIG  E     +  
Sbjct: 97  LRYADDTIIFCPAYKGNLDRWWALISLFIKGSGLRINLAKTSLIGINIGENEATSKVDKI 156

[Close]
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match: A0A438IC57 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_209 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 1   MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLAMKKVFFMVSRLALGLFVNL 60
           ++NG  +    TSRGLRQGDPLSPF FTIVAD  S  +  A +KV + VS     L VNL
Sbjct: 712 LVNGNAKGLVKTSRGLRQGDPLSPFLFTIVADVLSRMMLRAEEKVCWRVSGQISELKVNL 771

Query: 61  RKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLG 109
            K+ I G+N+  +   ++  L  CKA               W+ LYLG
Sbjct: 772 DKSNIFGINLDQDHLSRLALLLDCKASD-------------WSILYLG 806

[Close]
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match: A0A6L2LK15 (Mannan endo-1,4-beta-mannosidase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_032483 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 48/144 (33.33%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 1    MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLA-------MKKVFFMVSRLA 60
            +ING P  +F T  GLRQGDPLSPF F +V +   C++  A       + +V + V  LA
Sbjct: 1853 LINGSPTSEFSTKHGLRQGDPLSPFLFILVMEGLHCAMSNANPHDIDNIIRVLY-VFHLA 1912

Query: 61   LGLFVNLRKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLGPWIAK 120
             GL +N+ K+ I G+ +  +E   M + TGC A  F              + YLG  +  
Sbjct: 1913 SGLKINIHKSNIFGIGVTNDEISSMASRTGCAAGCF-------------RFTYLGLLVGA 1972

Query: 121  GL-LRQRWSGLTCLHFWRRLHCWK 137
             + L   W  +    F +RL  WK
Sbjct: 1973 NMNLTSSWQ-ILIDRFQKRLSSWK 1981

[Close]
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match: A0A699NER3 (Protein kinase-like domain, beta-lactamase/transpeptidase-like protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_782262 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 0 

Query: 1   MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLAMKKVFFMVSRLALGLFVNL 60
           ++NG P V+F   RG+RQGDPLSPF F + A+  +  +   ++KV         GL VN 
Sbjct: 4   LVNGSPTVEFGLERGVRQGDPLSPFLFILAAEGLNVIVSEVVEKV-------VSGLKVNY 63

Query: 61  RKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIWDRTVKEMWNWLYLG-PW 111
            K+ + GL +   E ++M    GC  + F        ++E    L LG PW
Sbjct: 64  NKSKVYGLGVSDRELLEMARWMGCGIKEFPFTYLGLPIRENMGRLKLGAPW 107

[Close]
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 44/125 (35.20%), Postives = 59/125 (47.20%), Query Frame = 0 

Query: 2   INGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSID----------LAMKKVFFMVSR 61
           INGRPR K + +RGLRQGDPLSPF FT++ DSFS  ++           A+ +   +VS 
Sbjct: 37  INGRPRGKIFATRGLRQGDPLSPFLFTLIGDSFSRLVNFCCERRIIQGFAVGRERIVVSH 96

Query: 62  L-----------------------------ALGLFVNLRKTTIIGLNIGTEERVKMPNLT 88
           L                               GL +NL KT++IG+NIG  E     +  
Sbjct: 97  LRYADDTIIFCPAYKGNLDRWWALISLFIKGSGLRINLAKTSLIGINIGENEATSKVDKI 156

[Close]
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match: A0A438CCF1 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_552 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-08
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 1   MINGRPRVKFWTSRGLRQGDPLSPFFFTIVADSFSCSIDLA----MKKVFFMVSRLAL-- 60
           ++NG  +     SRGLRQGDPLSPF FT+VAD  S  +  A    M + F  +  L L  
Sbjct: 606 LVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMMEGFRTLKSLLLVF 665

Query: 61  ----GLFVNLRKTTIIGLNIGTEERVKMPNLTGCKAEGFALVIW 95
               GL VNL K++I G+N+      ++  +  CKA G+ ++IW
Sbjct: 666 GHISGLKVNLNKSSIYGINLDQAHLSRLAEMLDCKASGWPILIW 709

The following BLAST results are available for this feature:
BLAST of Lag0039226 vs. NCBI nr
Match NameE-valueIdentityDescription
GEX03388.19.9e-0934.29hypothetical protein [Tanacetum cinerariifolium][more]
RVW94282.19.9e-0941.67Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
GFC10292.12.2e-0834.23protein kinase-like domain, beta-lactamase/transpeptidase-like protein [Tanacetu... [more]
GEU60505.12.2e-0833.33mannan endo-1,4-beta-mannosidase 6 isoform X1 [Tanacetum cinerariifolium][more]
XP_022158566.14.9e-0835.20uncharacterized protein LOC111025019 [Momordica charantia][more]
BLAST of Lag0039226 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438IC574.8e-0941.67Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A6L2LK151.1e-0833.33Mannan endo-1,4-beta-mannosidase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_0... [more]
A0A699NER31.1e-0834.23Protein kinase-like domain, beta-lactamase/transpeptidase-like protein OS=Tanace... [more]
A0A6J1E1962.4e-0835.20uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A438CCF13.1e-0839.42Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
BLAST of Lag0039226 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039226.1Lag0039226.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0071704 organic substance metabolic process
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0097159 organic cyclic compound binding