Lag0038609 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038609
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 21382646 .. 21384020 (-)
RNA-Seq Expression	Lag0038609
Synteny	Lag0038609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGACTAGAGCTAGGAAAGAAAGAGAGAGTGAAGAAGAGGAGGTACCGGTCACACCGGAAGTGAAAAAAGGGAAAACCAAAAAGAAAAGAACGCCGGAGGAAAAGGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGGCTGCAGAACAGGAGGAAGTTCAGGAGGTGACAGACGTTGTTGCCACTACTGCGGAAGAAGGAATTATTCAAGAACTTGAAGTACAAAAACCAGATACGGTTCAAGAAAAGATTGCTGAGAAAAATCAAGAAACAGAGGTTGAAGAGCAGGCTGAAGGTGAGCCTAACAAGGAGAAAACATCGGAGCTGGCGTAGGAGGCTCATGTTGAAGTCATTATACCTGAACCGCCCAGACGCCGCCGCATCAAGAGGAAGACAGGTCGCGTGAGGGTGATTGGAACACTCCATCACCTCCGACGTCGGACTCTGAGGAAGAAAATAGGGAAGCTGAGAATAAGGAAAAAGAAGAAGAGGCAAGAAAGGCAGAAGAAGAGCGTTTGCACAAACAGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGAGAGAAATTGAGGAGACGAGGGCACCATTCATTCGCTTCGTCAACGATCTTGCTCGAGCAAAATACCAGGAGGTGCTGAAACAGGACTTCTTGTTCGAACGAGGATTTGGCAGTGATTTGCCCAGGTTCTTGGAGTCTGGAATAGTGAACCTCGGATGGAGGCAATTTTGTGCGAAACCAGAACCTGTCAATTCCAACATTATTCGAGAATTTTATGCCAATCTTGACGTTAAGAATGATTTTGAGGTTATCGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCGTTAATGAATTGTTCGATCTCCAGGATTTTCCGCATGCCGTTTTAATGAGATGGTGGTTGCACCATCTAGTGATCAGCTGAGTGCGGCTGTCCGGGAGGTAGGTATTGAGGGGCTCAATGGAGGGTGTCGCAGACGCAGGAGCATACGTTTCAAGCTGCTTATTTGTAGAGTGAAGCCAACACTTGGATGGGTTTCATCAGGCTACGCTTGCTGTCGACAACACACGACTCCACAGTATCTCGGGACAGGTATTGCTTGCCTTTGCCATTCTTCGCTCGATGAGTATTGATGTAGGAAAAATTATTTCTTCTGAGATTGTTGATTGCTGGAAAAAGAAGGTGGGGAAGCTGTTCTTTCCAAACACTATCACAATGTTATGCAGCAGGGCAGGAGTGCCACGGTTCCAGAAGATATGATCATTACTGATAAGGGAATCATTGACACACCTAATCTGGCGCGGCTTCCACGTACGCAGAGGCTCGCCAGGGAGGGCTGGTGTATGGCGTTAATCAGATCCTAG

mRNA sequence

ATGGCTAAGACTAGAGCTAGGAAAGAAAGAGAGAGTGAAGAAGAGGAGGTACCGGTCACACCGGAAGTGAAAAAAGGGAAAACCAAAAAGAAAAGAACGCCGGAGGAAAAGGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGGCTGCAGAACAGGAGGAAGTTCAGGAGGTGACAGACGTTGTTGCCACTACTGCGGAAGAAGGAATTATTCAAGAACTTGAAGTACAAAAACCAGATACGGTTCAAGAAAAGATTGCTGAGAAAAATCAAGAAACAGAGACGCCGCCGCATCAAGAGGAAGACAGGTCGCGTGAGGGTGATTGGAACACTCCATCACCTCCGACGTCGGACTCTGAGGAAGAAAATAGGGAAGCTGAGAATAAGGAAAAAGAAGAAGAGGCAAGAAAGGCAGAAGAAGAGCGTTTGCACAAACAGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGAGAGAAATTGAGGAGACGAGGGCACCATTCATTCGCTTCGTCAACGATCTTGCTCGAGCAAAATACCAGGAGGTGCTGAAACAGGACTTCTTGTTCGAACGAGGATTTGGCAGTGATTTGCCCAGGTTCTTGGAGTCTGGAATAGTGAACCTCGGATGGAGGCAATTTTGTGCGAAACCAGAACCTGTCAATTCCAACATTATTCGAGAATTTTATGCCAATCTTGACGTTAAGAATGATTTTGAGGTTATCGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCGTTAATGAATTTGATCAGCTGAGTGCGGCTGTCCGGGAGGTAGGTATTGAGGGGCTCAATGGAGGGTGTCGCAGACGCAGGAGCATACGTTTCAAGCTGCTTATTTGTAGAGTGAAGCCAACACTTGGATGGGTTTCATCAGGCTACGCTTGCTGTCGACAACACACGACTCCACAGTATCTCGGGACAGAAGGTGGGGAAGCTGTTCTTTCCAAACACTATCACAATGTTATGCAGCAGGGCAGGAGTGCCACGGTTCCAGAAGATATGATCATTACTGATAAGGGAATCATTGACACACCTAATCTGGCGCGGCTTCCACGTACGCAGAGGCTCGCCAGGGAGGGCTGGTGTATGGCGTTAATCAGATCCTAG

Coding sequence (CDS)

ATGGCTAAGACTAGAGCTAGGAAAGAAAGAGAGAGTGAAGAAGAGGAGGTACCGGTCACACCGGAAGTGAAAAAAGGGAAAACCAAAAAGAAAAGAACGCCGGAGGAAAAGGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGGCTGCAGAACAGGAGGAAGTTCAGGAGGTGACAGACGTTGTTGCCACTACTGCGGAAGAAGGAATTATTCAAGAACTTGAAGTACAAAAACCAGATACGGTTCAAGAAAAGATTGCTGAGAAAAATCAAGAAACAGAGACGCCGCCGCATCAAGAGGAAGACAGGTCGCGTGAGGGTGATTGGAACACTCCATCACCTCCGACGTCGGACTCTGAGGAAGAAAATAGGGAAGCTGAGAATAAGGAAAAAGAAGAAGAGGCAAGAAAGGCAGAAGAAGAGCGTTTGCACAAACAGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGAGAGAAATTGAGGAGACGAGGGCACCATTCATTCGCTTCGTCAACGATCTTGCTCGAGCAAAATACCAGGAGGTGCTGAAACAGGACTTCTTGTTCGAACGAGGATTTGGCAGTGATTTGCCCAGGTTCTTGGAGTCTGGAATAGTGAACCTCGGATGGAGGCAATTTTGTGCGAAACCAGAACCTGTCAATTCCAACATTATTCGAGAATTTTATGCCAATCTTGACGTTAAGAATGATTTTGAGGTTATCGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCGTTAATGAATTTGATCAGCTGAGTGCGGCTGTCCGGGAGGTAGGTATTGAGGGGCTCAATGGAGGGTGTCGCAGACGCAGGAGCATACGTTTCAAGCTGCTTATTTGTAGAGTGAAGCCAACACTTGGATGGGTTTCATCAGGCTACGCTTGCTGTCGACAACACACGACTCCACAGTATCTCGGGACAGAAGGTGGGGAAGCTGTTCTTTCCAAACACTATCACAATGTTATGCAGCAGGGCAGGAGTGCCACGGTTCCAGAAGATATGATCATTACTGATAAGGGAATCATTGACACACCTAATCTGGCGCGGCTTCCACGTACGCAGAGGCTCGCCAGGGAGGGCTGGTGTATGGCGTTAATCAGATCCTAG

Protein sequence

MAKTRARKERESEEEEVPVTPEVKKGKTKKKRTPEEKEAKKRRRQQRAAEQEEVQEVTDVVATTAEEGIIQELEVQKPDTVQEKIAEKNQETETPPHQEEDRSREGDWNTPSPPTSDSEEENREAENKEKEEEARKAEEERLHKQRESKGKGIAEASREIEETRAPFIRFVNDLARAKYQEVLKQDFLFERGFGSDLPRFLESGIVNLGWRQFCAKPEPVNSNIIREFYANLDVKNDFEVIVRGVPVQWSPEAVNEFDQLSAAVREVGIEGLNGGCRRRRSIRFKLLICRVKPTLGWVSSGYACCRQHTTPQYLGTEGGEAVLSKHYHNVMQQGRSATVPEDMIITDKGIIDTPNLARLPRTQRLAREGWCMALIRS

Homology

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BLAST of Lag0038609 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-08
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 170 FVNDLARAKYQEVLKQDFLFERGFGSDLPRFLESGIVNLG-----------WRQFCAKPE 229
           FV++ A+  YQ +  +   FE GF      F E+   NLG           W++F   P 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGF-----VFSEAENANLGSEVLDVVTKHKWQKFAKHPV 74

Query: 230 PVNSNIIREFYANLDVKNDFEVIVRGVPVQWSPEAVNEFDQLSAA 264
           PVN+ I++EFY+N+   N   V+VRG+ ++++P A+N + +L  A
Sbjct: 75  PVNATIVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQVA 114

The following BLAST results are available for this feature:

BLAST of Lag0038609 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8695166.1	7.9e-08	33.33	hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]	[more]

BLAST of Lag0038609 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038609 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038609 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 115..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038609.1	Lag0038609.1	mRNA