|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGCAAGGGGTATCCACTCCTTGACATTGATCCAGAGATAGAAAAAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAGCAACAAGAGTTGAGCGCACGAGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAAGATCGTGGAAGAGAGCAGAATGGCGGGAGAATTCCTCCTGTTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCTGATTTACATTGTGGAAGATCGCAACCGAGCAATAAAGGACTACACTTTACCAGTTTTCCAGACATTAAATCAAGGAATTTTGGAGCCACCGATTGATGCTTGA mRNA sequence ATGAGCAAGGGGTATCCACTCCTTGACATTGATCCAGAGATAGAAAAAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAGCAACAAGAGTTGAGCGCACGAGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAAGATCGTGGAAGAGAGCAGAATGGCGGGAGAATTCCTCCTGTTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCTGATTTACATTGTGGAAGATCGCAACCGAGCAATAAAGGACTACACTTTACCAGTTTTCCAGACATTAAATCAAGGAATTTTGGAGCCACCGATTGATGCTTGA Coding sequence (CDS) ATGAGCAAGGGGTATCCACTCCTTGACATTGATCCAGAGATAGAAAAAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAGCAACAAGAGTTGAGCGCACGAGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAAGATCGTGGAAGAGAGCAGAATGGCGGGAGAATTCCTCCTGTTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCTGATTTACATTGTGGAAGATCGCAACCGAGCAATAAAGGACTACACTTTACCAGTTTTCCAGACATTAAATCAAGGAATTTTGGAGCCACCGATTGATGCTTGA Protein sequence MSKGYPLLDIDPEIEKTFRRRRKEQRRKKKEQQELSAREFLEEASYIQEFPMEPPGVDPQVDPQDRGREQNGGRIPPVPPVPLVPQQENLIYIVEDRNRAIKDYTLPVFQTLNQGILEPPIDA
Homology
BLAST of Lag0038586 vs. NCBI nr
Match: XP_024033511.1 (uncharacterized protein LOC112095639 [Citrus clementina]) HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04 Identity = 35/117 (29.91%), Postives = 57/117 (48.72%), Query Frame = 0
Query: 7 LLDIDPEIEKTFRRRRKEQRRKKKEQQELSAREFLEEASYIQEFPMEPPGVDPQVDPQDR 66
+ DPEIE+T RR R+EQR K L +E + P++P + + +
Sbjct: 8 VFQFDPEIERTIRRLRREQRNSK---TTLGINNLQDEGNLNPHGPLQPANIQEEHNEYAN 67
Query: 67 GREQNGGRIPPVPPVPLVPQQENLIYIVEDRNRAIKDYTLPVFQTLNQGILEPPIDA 124
GR+ P N+IY+ ++R+RAI+DY + Q ++ GI+ P +DA
Sbjct: 68 GRQ---------------PGNNNIIYMADNRDRAIRDYVVLTPQVVHPGIIRPEVDA 106
BLAST of Lag0038586 vs. NCBI nr
Match: XP_024046666.1 (uncharacterized protein LOC112101006 [Citrus clementina]) HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04 Identity = 35/120 (29.17%), Postives = 57/120 (47.50%), Query Frame = 0
Query: 4 GYPLLDIDPEIEKTFRRRRKEQRRKKKEQQELSAREFLEEASYIQEFPMEPPGVDPQVDP 63
G + DPEIE+T RR R+EQR K +E + P++P + + +
Sbjct: 5 GSVIFQFDPEIERTIRRLRREQRNPK---TVTGMNNLQDEGNLNPHGPLQPANIQEEQNE 64
Query: 64 QDRGREQNGGRIPPVPPVPLVPQQENLIYIVEDRNRAIKDYTLPVFQTLNQGILEPPIDA 123
GR+ P N+IY+ +DR+RAI+DY + Q ++ GI+ P ++A
Sbjct: 65 HVNGRQ---------------PGNNNIIYMADDRDRAIRDYAVLTPQVVHPGIIRPEVNA 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_024033511.1 | 3.0e-04 | 29.91 | uncharacterized protein LOC112095639 [Citrus clementina] | [more] |
| XP_024046666.1 | 3.9e-04 | 29.17 | uncharacterized protein LOC112101006 [Citrus clementina] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 14..34 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..82 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
