Lag0038582 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038582
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr2: 20821911 .. 20823739 (+)
RNA-Seq Expression	Lag0038582
Synteny	Lag0038582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACTGGGTTGTTTAAGAGTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGAAAATACCTTTCTTTTGTTCTAAGGTAGACCATATTAATCTCAATTTGATCGGGAGATTGGTCAAGAGTGAACTTCTAAACGAGTTAGAAGATGACTCTCTACTACCTTGTAAGTCATGCCTTGTGGGAAATATGACTGATAGATCTTTTACTGGAAAAGATCTAAGAGGCAAAGAGCCCTTGGAGCTTGTACATTTGGATCCTTGTGGTTCAATATGTTAAAGCAGTGGGAGGACATGAATAATTCAGGTCCGTTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTCAAAAAACATTTTGTATAAAAACTATTTAAAATTTAAACACTCATATGTTTGGTTGCATTTCCTCACAAATGTTTCTATACACAAGTTATTGTTTACTTAAGAAGTCTTTTTTAAAAAGTTGGTTTCAAGTGTTTCTCTCAAAATGGTTTATTTATCAATCTCATTTTCTAATAAGTCATTTTTAGTGGTTGCAAAACATTAGAAATTTTTCAAAATGATTTATTTTCAAAATTAAACACTTGAAAAGTTAGACCAAACACACCCTTCATCTCTTTTGGATGATTATTCAAAGGTATGAGTATCTTTACCTAATGTAACTTAAGTCTGAAGCTCTTGAGATATTCGAAGGGGCTTAGGACTGAAGTTGAAAACTTGTTAGGTGAGATGATAAAAATACTTCGATCTGATCAAAGTGTTGAGTATAGGGATTTGAGATTCCAGGACTATTTGATAGTACATGGGATCACACCCTAAATCTCATTTAGGAGAAATAGAACCCTATTGGATATGGTTCATTCCATGTTGAGCTATGCTCAATTGTCTGGCTCGTTTTGGGGTCATGCAGTGTTGACTGCATTGCATACTGTAGTAGACAACTCCAAAGGAAACGAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCAAAAAATGCTAAATTCTCAGAAGAAGTCCACATCAAAAATCATAAACCACAAGAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGACTGTTCGACAAGAGTTGTTGATAGATCAGTGCATCTAGTTAGTGACATCCATCTCAATAGTTGAGATTGCCTCAATGTAGTGGGAGAGTTATTTGATAACTTGAACGTTACATGGACTTGTTTGAAGCCTAGGTCATCATACCTGATGATGGCATAGTGGGTTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATGGATTAAAGTCATGGACTTGGAAATGAAGTATTTTGTATTTCACTTCCATCTGGGATCTTGTAGATCTGCTTGATGGGTAACACCTATTAGTTACAAGTGGATTTGCAAGAGAAAATGAGACATTAAAGGTCTTAACCAGAAGGGTTCATATAGCAAGATCGAAAGCAAAGCGGTTTGCAAGCTTAAGTGATCCATTCATGGATTGACCTAAGCATTTCGATCTTGAAAAATAAGATTTGATATAGTGATCAAATCTTTTGGCTTTAATCAGAACATTAATGAGTCTTGTGTTTACAAGTAATCATCAATAGTTCAGTAGCTTAATTAGTGTTATATATGATTGATATCCTAATCATTGAGAATGATGTAGGTTATCTTACTGATATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAACTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATCGTTAGGAATCGTTAG

mRNA sequence

ATGAACACTGGGTTGTTTAAGAGTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGAAAATACCTTTCTTTTGTTCTAAGTGTTGACTGCATTGCATACTGTAGTAGACAACTCCAAAGGAAACGAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCAAAAAATGCTAAATTCTCAGAAGAAGTCCACATCAAAAATCATAAACCACAAGAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGACTGTTCGACAAGAGTTGTTGATAGATCAGTGCATCTAGTCATCATACCTGATGATGGCATAGTGGGTTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATGGATTAAAGTCATGGACTTGGAAATGAAGTATTTTGTATTTCACTTCCATCTGGGATCTTGTTATCTTACTGATATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAACTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATCGTTAGGAATCGTTAG

Coding sequence (CDS)

ATGAACACTGGGTTGTTTAAGAGTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGAAAATACCTTTCTTTTGTTCTAAGTGTTGACTGCATTGCATACTGTAGTAGACAACTCCAAAGGAAACGAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCAAAAAATGCTAAATTCTCAGAAGAAGTCCACATCAAAAATCATAAACCACAAGAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGACTGTTCGACAAGAGTTGTTGATAGATCAGTGCATCTAGTCATCATACCTGATGATGGCATAGTGGGTTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATGGATTAAAGTCATGGACTTGGAAATGAAGTATTTTGTATTTCACTTCCATCTGGGATCTTGTTATCTTACTGATATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAACTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATCGTTAGGAATCGTTAG

Protein sequence

MNTGLFKSATTQCEKRQRISPKGKYLSFVLSVDCIAYCSRQLQRKREVDTSSIHKRIKNLYQKMLNSQKKSTSKIINHKSKVDLSKLTNEATVTSTRVVDEVDCSTRVVDRSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKYFVFHFHLGSCYLTDIKGASSSFPNGNLGEAEFVLGIQIVRNR

Homology

[Close]

BLAST of Lag0038582 vs. NCBI nr
Match: KAA0045186.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27366.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 8.8e-11
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 77  NHKSKVDLSKLTNEATVTSTRVVDEVDCSTRVVDRSVHLVIIPDDGIVGSLSFRKKMNDV 136
           +HK +  L  + NEAT  STRV DEV  S+RV +      I  DD +   LS+++ MNDV
Sbjct: 256 DHKLRSKL--VLNEATHESTRVFDEVGLSSRVDE-----TITSDDSVEDPLSYKQTMNDV 315

Query: 137 DKDQWIKVMDLEMKYFVF-------------HFHL-----------------GSCYLTDI 194
           DKDQW+K MDLEMK   F             HF +                  S +++ +
Sbjct: 316 DKDQWVKAMDLEMKSMYFNSVWELVDLLEGPHFMIMTWKMDVKTAFLNDNLEESIFMSQL 375

[Close]

BLAST of Lag0038582 vs. NCBI nr
Match: KAA0060473.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-10
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 77  NHKSKVDLSKLTNEATVTSTRVVDEVDCSTRVVDRSVHLVIIPDDGIVGSLSFRKKMNDV 136
           +HK +  L  + NEAT  STRVVDEV  S+RVV        IPDDG+  SLS+++ MNDV
Sbjct: 131 DHKPQSKL--VLNEATNESTRVVDEVGRSSRVV--------IPDDGVEDSLSYKQAMNDV 190

Query: 137 DKDQWIKVMDLEMKYFVFH 156
           DKD+W+K MDLEM+Y  F+
Sbjct: 191 DKDEWVKAMDLEMEYMYFN 199

[Close]

BLAST of Lag0038582 vs. NCBI nr
Match: TYJ98650.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-09
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 77  NHKSKVDLSKLTNEATVTSTRVVDEVDCSTRVVDRSV------HLVIIPDDGIVGSLSFR 136
           +HK +  L  + NEAT  STRVVDEV  S+R VD S+        V+IPDDG+   LS++
Sbjct: 360 DHKPRSKL--VLNEATDKSTRVVDEVGLSSR-VDESITSGLIETQVVIPDDGVEHPLSYK 419

Query: 137 KKMNDVDKDQWIKVMDLEMKYFVFH 156
           + MNDVDKDQW+K MDLEM+   F+
Sbjct: 420 QVMNDVDKDQWVKAMDLEMESMYFN 441

[Close]

BLAST of Lag0038582 vs. NCBI nr
Match: KAA0047456.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-09
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 77  NHKSKVDLSKLTNEATVTSTRVVDEVDCSTRVVDRSV------HLVIIPDDGIVGSLSFR 136
           +HK +  L  + NEAT  STRVVDEV  S+R VD S+        V+IPDDG+   LS++
Sbjct: 426 DHKPRSKL--VLNEATDKSTRVVDEVGLSSR-VDESITSGLIETQVVIPDDGVEHPLSYK 485

Query: 137 KKMNDVDKDQWIKVMDLEMKYFVFH 156
           + MNDVDKDQW+K MDLEM+   F+
Sbjct: 486 QVMNDVDKDQWVKAMDLEMESMYFN 507

[Close]

BLAST of Lag0038582 vs. NCBI nr
Match: TYK23832.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-08
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 116 VIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKYFVFHF------------HLG---- 175
           ++IPDDGI   L++++ MNDVD DQWIK MDLEM+    ++             +G    
Sbjct: 50  IVIPDDGIEDPLTYKQAMNDVDCDQWIKAMDLEMESMYSNYVWTLVDQPNDVKPIGCKWI 109

Query: 176 -------SCYLTDI-KGASSSFPNGNLGEAEFVLGIQIVRNR 194
                  + +LTDI K  ++ F   +LG A++VLGIQIVRNR
Sbjct: 110 YKRKRDQAGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNR 151

The following BLAST results are available for this feature:

BLAST of Lag0038582 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045186.1	8.8e-11	36.91	gag/pol protein [Cucumis melo var. makuwa] >TYK27366.1 gag/pol protein [Cucumis ...	[more]
KAA0060473.1	5.7e-10	54.43	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYJ98650.1	4.8e-09	51.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047456.1	4.8e-09	51.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK23832.1	4.1e-08	41.18	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0038582 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038582.1	Lag0038582.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding