Lag0038574 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038574
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr2: 20665135 .. 20665470 (+)
RNA-Seq Expression	Lag0038574
Synteny	Lag0038574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAATACTGCAATGGATTGCTCAGGATCATGTATTGATCACTTTGATCAATGCTACGCTGTCCAAAACTGTCTTCTCTTTTGTCGTCGATTGTAAAATAGCAAGTGAGGTATGGTTAACTCTTGAGAAATGCTTCTCTTCTTTAAGTAGATTGCACATACAAGAACTCAAATATGTTCTTCACACTATCTCCAAATCCTCTACTAAATCGACTAAGGATTATCTTCTATGCATCAAGGAGATTCTTAATAAACTAGCAAATGTTGTTGTCATTGTTGATGATGAAGATGTTCTGTTGTACATGCTTGATGACTTTCCTTTTGATTATTAA

mRNA sequence

ATGGATCCAATACTGCAATGGATTGCTCAGGATCATGTATTGATCACTTTGATCAATGCTACGCTGTCCAAAACTGTCTTCTCTTTTGTCGTCGATTGTAAAATAGCAAGTGAGGTATGGTTAACTCTTGAGAAATGCTTCTCTTCTTTAAGTAGATTGCACATACAAGAACTCAAATATGTTCTTCACACTATCTCCAAATCCTCTACTAAATCGACTAAGGATTATCTTCTATGCATCAAGGAGATTCTTAATAAACTAGCAAATGTTGTTGTCATTGTTGATGATGAAGATGTTCTGTTGTACATGCTTGATGACTTTCCTTTTGATTATTAA

Coding sequence (CDS)

ATGGATCCAATACTGCAATGGATTGCTCAGGATCATGTATTGATCACTTTGATCAATGCTACGCTGTCCAAAACTGTCTTCTCTTTTGTCGTCGATTGTAAAATAGCAAGTGAGGTATGGTTAACTCTTGAGAAATGCTTCTCTTCTTTAAGTAGATTGCACATACAAGAACTCAAATATGTTCTTCACACTATCTCCAAATCCTCTACTAAATCGACTAAGGATTATCTTCTATGCATCAAGGAGATTCTTAATAAACTAGCAAATGTTGTTGTCATTGTTGATGATGAAGATGTTCTGTTGTACATGCTTGATGACTTTCCTTTTGATTATTAA

Protein sequence

MDPILQWIAQDHVLITLINATLSKTVFSFVVDCKIASEVWLTLEKCFSSLSRLHIQELKYVLHTISKSSTKSTKDYLLCIKEILNKLANVVVIVDDEDVLLYMLDDFPFDY

Homology

[Close]

BLAST of Lag0038574 vs. NCBI nr
Match: XP_022159298.1 (uncharacterized protein LOC111025709 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 7   WIAQDHVLITLINATLSKTVFSFVVDCKIASEVWLTLEKCFSSLSRLHIQELKYVLHTIS 66
           WIA+DH L+TL+NATLS +  +++V C  + +VW TL K +SS SR ++  LK  L +IS
Sbjct: 51  WIAKDHALMTLLNATLSPSALAYMVGCDSSQQVWQTLVKYYSSSSRTNVVNLKSNLQSIS 110

Query: 67  KSSTKSTKDYLLCIKEILNKLANVVVIVDDEDVLLYMLDDFPFDY 112
           K   +S   Y+  IKE+ +KLANV V+VD+ED+L+Y L+  P ++
Sbjct: 111 KKPGESIDLYMQRIKELKDKLANVSVLVDNEDLLIYTLNGLPPEF 155

[Close]

BLAST of Lag0038574 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 49/106 (46.23%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 6   QWIAQDHVLITLINATLSKTVFSFVVDCKIASEVWLTLEKCFSSLSRLHIQELKYVLHTI 65
           +WIA+DH L+TL+NA LS +  ++VV C  + +VW TL K +SS SR ++  LK  L +I
Sbjct: 85  EWIAKDHALMTLLNAXLSSSALAYVVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQSI 144

Query: 66  SKSSTKSTKDYLLCIKEILNKLANVVVIVDDEDVLLYMLDDFPFDY 112
           SK    S   Y+  IKE+ +KLANV V+VD+ED+L+Y L+  P ++
Sbjct: 145 SKKPGXSIDXYVQRIKELKDKLANVXVLVDNEDLLIYTLNXLPPEF 190

[Close]

BLAST of Lag0038574 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 7   WIAQDHVLITLINATLSKTVFSFVVDCKIASEVWLTLEKCFSSLSRLHIQELKYVLHTIS 66
           W A+D  L+T+INATLS    ++VV    + +VW  L K +SS SR ++  LK  L TIS
Sbjct: 75  WFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTIS 134

Query: 67  KSSTKSTKDYLLCIKEILNKLANVVVIVDDEDVLLYMLDDFPFDY 112
           K S +S   Y+  IKEI +KLANV  +V+DED+L+Y L+  P +Y
Sbjct: 135 KKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEY 179

[Close]

BLAST of Lag0038574 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 7   WIAQDHVLITLINATLSKTVFSFVVDCKIASEVWLTLEKCFSSLSRLHIQELKYVLHTIS 66
           W A+D  L+T+INATLS    ++VV    + +VW  L K +SS SR ++  LK  L TIS
Sbjct: 75  WFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTIS 134

Query: 67  KSSTKSTKDYLLCIKEILNKLANVVVIVDDEDVLLYMLDDFPFDY 112
           K S +S   Y+  IKEI +KLANV  +V+DED+L+Y L+  P +Y
Sbjct: 135 KKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEY 179

[Close]

BLAST of Lag0038574 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 5.4e-13
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 3   PILQWIAQDHVLITLINATLSKTVFSFVVDCKIASEVWLTLEKCFSSLSRLHIQELKYVL 62
           P   W A+D   + LINATLS    ++VV CK +S+VW TLE+ +SS +R +I  LK  L
Sbjct: 95  PYEDWQAKDQAFMFLINATLSVEALTYVVGCKSSSQVWKTLERHYSSNTRTNIVNLKSDL 154

Query: 63  HTISKSSTKSTKDYLLCIKEILNKLANVVVIVDDEDVLLYMLDDFPFDY 112
             ISK   +    Y+  IKE+ +KLAN   IV+DED+++Y L+  P +Y
Sbjct: 155 QQISKKPDEPIGLYIKKIKEVKDKLANAATIVEDEDLVIYALNGLPREY 203

The following BLAST results are available for this feature:

BLAST of Lag0038574 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159298.1	3.4e-15	46.67	uncharacterized protein LOC111025709 [Momordica charantia]	[more]
XP_022158689.1	3.4e-15	46.23	uncharacterized protein LOC111025150 [Momordica charantia]	[more]
KAG6588985.1	3.7e-14	46.67	Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr...	[more]
KAG7015254.1	3.7e-14	46.67	hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK17989.1	5.4e-13	44.04	uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0038574 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 7..110 e-value: 1.1E-11 score: 44.6
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 5..111
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 5..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038574.1	Lag0038574.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016491	oxidoreductase activity