Lag0038573 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038573
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 20663548 .. 20664333 (+)
RNA-Seq Expression	Lag0038573
Synteny	Lag0038573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTGTACCTTAACGAAACTGCTTTCTTGAGGCCTTATGATGGTCAACCTTGGCTACATAGGCTTTGTAGGCTCGGGAATCTCATCTCGACGGAGATTTCACTTGGTCGAGAACTTGGAGAGTTTGAGAATATGAGTGGCTCAAACTCTACAAGAATCAATCTCATCTCGATGGTTCTTCCACTCGATCGAGGACTTGGAGAGTTTGAGCACATAGGTGGCTCAAACTCTGCAAGAATCAATCTCATCTTGACGGTGCTTACACTCGGTCGAAGACTTGGAGAGTTTGAGCATGTAGGTGGTTCAAACTCTGCAAGAATCAATTTCATCCCGACGATGCTTACACTCGGTCAAGGACTTAGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGTAAGAATCAATCTCAGCTCAACGATGCTTCCACTCGGTCGAGGACTTGGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGCAAGAATCAATCTCATCTCAACGGTGCTTACACTCGGTCGAGGACTTGGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGCAAGAATCCATCTCATCTCGACGATGCTTATACTCGGTCGAGGACTTGGAGTGGTTGAGCATGTAGGTGGCTCAAACTCTACAAGAACCAATCTCATCTCGATGGTGCTTACACTCAATCGAGGACTTAGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTACAAGAATCAATCTATCTCGGCCAAATGTGCTATATCCAGTTGAAAAATGTTTCGCGCAAACATAG

mRNA sequence

ATGGAATTGTACCTTAACGAAACTGCTTTCTTGAGGCCTTATGATGGTCAACCTTGGCTACATAGGCTTTGTAGGCTCGGGAATCTCATCTCGACGGAGATTTCACTTGGTCGAGAACTTGGAGAGTTTGAGAATATGAGTGGCTCAAACTCTACAAGAATCAATCTCATCTCGATGGTTCTTCCACTCGATCGAGGACTTGGAGAGTTTGAGCACATAGGTGGCTCAAACTCTGCAAGAATCAATCTCATCTTGACGGTGCTTACACTCGGTCGAAGACTTGGAGAGTTTGAGCATGTAGGTGGTTCAAACTCTGCAAGAATCAATTTCATCCCGACGATGCTTACACTCGGTCAAGGACTTAGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGTAAGAATCAATCTCAGCTCAACGATGCTTCCACTCGGTCGAGGACTTGGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGCAAGAATCAATCTCATCTCAACGGTGCTTACACTCGGTCGAGGACTTGGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGCAAGAATCCATCTCATCTCGACGATGCTTATACTCGGTCGAGGACTTGGAGTGGTTGAGCATGTAGGTGGCTCAAACTCTACAAGAACCAATCTCATCTCGATGGTGCTTACACTCAATCGAGGACTTAGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTACAAGAATCAATCTATCTCGGCCAAATGTGCTATATCCAGTTGAAAAATGTTTCGCGCAAACATAG

Coding sequence (CDS)

ATGGAATTGTACCTTAACGAAACTGCTTTCTTGAGGCCTTATGATGGTCAACCTTGGCTACATAGGCTTTGTAGGCTCGGGAATCTCATCTCGACGGAGATTTCACTTGGTCGAGAACTTGGAGAGTTTGAGAATATGAGTGGCTCAAACTCTACAAGAATCAATCTCATCTCGATGGTTCTTCCACTCGATCGAGGACTTGGAGAGTTTGAGCACATAGGTGGCTCAAACTCTGCAAGAATCAATCTCATCTTGACGGTGCTTACACTCGGTCGAAGACTTGGAGAGTTTGAGCATGTAGGTGGTTCAAACTCTGCAAGAATCAATTTCATCCCGACGATGCTTACACTCGGTCAAGGACTTAGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGTAAGAATCAATCTCAGCTCAACGATGCTTCCACTCGGTCGAGGACTTGGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGCAAGAATCAATCTCATCTCAACGGTGCTTACACTCGGTCGAGGACTTGGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTGCAAGAATCCATCTCATCTCGACGATGCTTATACTCGGTCGAGGACTTGGAGTGGTTGAGCATGTAGGTGGCTCAAACTCTACAAGAACCAATCTCATCTCGATGGTGCTTACACTCAATCGAGGACTTAGAGAGGTTGAGCATGTAGGTGGCTCAAACTCTACAAGAATCAATCTATCTCGGCCAAATGTGCTATATCCAGTTGAAAAATGTTTCGCGCAAACATAG

Protein sequence

MELYLNETAFLRPYDGQPWLHRLCRLGNLISTEISLGRELGEFENMSGSNSTRINLISMVLPLDRGLGEFEHIGGSNSARINLILTVLTLGRRLGEFEHVGGSNSARINFIPTMLTLGQGLREVEHVGGSNSVRINLSSTMLPLGRGLGEVEHVGGSNSARINLISTVLTLGRGLGEVEHVGGSNSARIHLISTMLILGRGLGVVEHVGGSNSTRTNLISMVLTLNRGLREVEHVGGSNSTRINLSRPNVLYPVEKCFAQT

Homology

[Close]

BLAST of Lag0038573 vs. NCBI nr
Match: XP_035739820.1 (uncharacterized protein LOC118449423 [Vespa mandarinia])

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 56/209 (26.79%), Postives = 93/209 (44.50%), Query Frame = 0


Query: 64  DRGLGEFEHIGGSNSARINLILTVLTL--------GRRLGEFEHVGGSNSARINFIPTML 123
           DR +   + IGG N  R + I     L        G  +   +H+GG N  R      + 
Sbjct: 125 DRTMRNLDQIGGGNLVRSSNIFGTSFLRNLDHIGGGNLVRNLDHIGGGNLVR-----NLD 184

Query: 124 TLGQG--LREVEHVGGSNSVRINLSSTMLPLGRGLGEVEHVGGSNSARI-------NLIS 183
            +G G  +R ++H+GG N VR NL    +  G  +  ++ +GG N  R        NL+ 
Sbjct: 185 HIGGGNLVRNLDHIGGGNLVR-NLDH--IGGGNLVRNLDQIGGGNLVRNLDQIGGGNLVR 244

Query: 184 TVLTLGRG--LGEVEHVGGSNSARIHLISTMLILGRGLGV--VEHVGGSNSTRT------ 243
            +  +G G  +  ++ +GG N     L+  +  +G G  V  ++H+GG N  R       
Sbjct: 245 NLDQIGGGNLVRNLDQIGGGN-----LVRNLDQIGGGNLVRNLDHIGGGNLVRNLDHIGG 304

The following BLAST results are available for this feature:

BLAST of Lag0038573 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_035739820.1	1.3e-04	26.79	uncharacterized protein LOC118449423 [Vespa mandarinia]	[more]

BLAST of Lag0038573 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038573 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038573 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038573.1	Lag0038573.1	mRNA