Lag0038555 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038555
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 20328674 .. 20329952 (+)
RNA-Seq Expression	Lag0038555
Synteny	Lag0038555

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGGCTGGAAGAACAAAGAACGAGAGGGAGGTCGCCGATGGAAAAAAGAAGGAGAAAAAGAAACGGAAAAAAAAATCTCGCCGACGAGGACGGCCGGTGCCGGCACCGGCGCCGATGGCTGCTGGACGAGGAAGAAGAAGAATAAGAAGAAGAAGAAGAAAAGGAAAAAGAAAAAGAAAAAGGTGGTTGAGAGAGAATGAATAAATAAATTAAATATATATATATATATATATATATATATTTCTTATTTTAATATATCTATATTTTAAAAAATAAAAAATGATTTTTAAAATTAAAAAATCAACGCCACGTCAGTAATCCGTTAAATACTAACAGAAAATTGGATGGAGGGACCAAATTGCAACTAAAATCAAACCTCATGGACTAATTTGTTTTTGCTGAAAAAAATTGATGGACCAAAAGTTTTGAAGGATGAATGAGGATCCATCAGTTTTTCTGTCTCCCAGAACTTAGGTGAGCTTCATCATAAAATGTTGCCATTCTGAGGGACAAGAGATGGAATGACTAAGGATTTTTTAGCTTTATAAAGAGTATTGAGCTTAGTTGGTGATGAGTTTGAGGAAAGGGTATATGATAGCGAGCATAGCTAGCTACTTTTACTTATTTAATTTAGCTAGTCTTTTATGATGTTTGGGCCATTTTATTGTGTTTTATTGTTTATTTTGTAGGAAATGGTTGATTGGAGCTATAATGCCATATTAGAGTTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAAAAGAGGAAAAAAGTCAAATCTCGGTCAAATCAATGAATCATTCGCAGTTTACGCGTCAAATTATGGTTCTTACAAAATCACCATTTATTGATACTCCCAAGACTGTAATGGATCTGACTTCTAATTCTACTAGTTATCTTTTATCATTAGGCTTTCAATTTATGCCCGGTCAAAGTGATTTTATATTAAAAAATCTGAGATTACCTGAGACCTTAGATGGTTTAAAAGGGTTAAGAGATAACCTTGGTCTAACGTTTGCAAAAGACAGTCTTACTAATCGTGGTATCCTGAAGTTTGAGGGTTTCTCTGAAATACACGCTAAAGGCTCTTTGCTCATGAATCGTGTTTTGCTTGAAGCTATAACTTATAATTCTGGATTTTATGGTCGTTTCTTGGTATTGGCCCAAATTGGCGTTGGTTGTACAGTATGGTATGGTTATGCAATAAACGGCGCTCCTCTGACTTTGCTGCTTTCGTGTGCGGCGGGCTGTGCTGGCTGA

mRNA sequence

ATGACCGGCTGGAAGAACAAAGAACGAGAGGGAGGTCGCCGATGGAAAAAAGAAGGAGAAAAAGAAACGGAAAAAAAAATCTCGCCGACGAGGACGGCCGGTGCCGGCACCGGCGCCGATGGCTGCTGGACGAGGAAGAAGAAGAATAAGAAGAAGAAGAAGAAAAGGAAAAAGAAAAAGAAAAAGGAAATGGTTGATTGGAGCTATAATGCCATATTAGAGTTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAAAAGAGGAAAAAAGTCAAATCTCGGTCAAATCAATGAATCATTCGCAGTTTACGCGTCAAATTATGGCTTTCAATTTATGCCCGGTCAAAGTGATTTTATATTAAAAAATCTGAGATTACCTGAGACCTTAGATGGTTTAAAAGGGTTAAGAGATAACCTTGGTCTAACGTTTGCAAAAGACAGTCTTACTAATCGTGGTATCCTGAAGTTTGAGGGTTTCTCTGAAATACACGCTAAAGGCTCTTTGCTCATGAATCGTGTTTTGCTTGAAGCTATAACTTATAATTCTGGATTTTATGGTCGTTTCTTGGTATTGGCCCAAATTGGCGTTGGTTGTACAGTATGGTATGGTTATGCAATAAACGGCGCTCCTCTGACTTTGCTGCTTTCGTGTGCGGCGGGCTGTGCTGGCTGA

Coding sequence (CDS)

ATGACCGGCTGGAAGAACAAAGAACGAGAGGGAGGTCGCCGATGGAAAAAAGAAGGAGAAAAAGAAACGGAAAAAAAAATCTCGCCGACGAGGACGGCCGGTGCCGGCACCGGCGCCGATGGCTGCTGGACGAGGAAGAAGAAGAATAAGAAGAAGAAGAAGAAAAGGAAAAAGAAAAAGAAAAAGGAAATGGTTGATTGGAGCTATAATGCCATATTAGAGTTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAAAAGAGGAAAAAAGTCAAATCTCGGTCAAATCAATGAATCATTCGCAGTTTACGCGTCAAATTATGGCTTTCAATTTATGCCCGGTCAAAGTGATTTTATATTAAAAAATCTGAGATTACCTGAGACCTTAGATGGTTTAAAAGGGTTAAGAGATAACCTTGGTCTAACGTTTGCAAAAGACAGTCTTACTAATCGTGGTATCCTGAAGTTTGAGGGTTTCTCTGAAATACACGCTAAAGGCTCTTTGCTCATGAATCGTGTTTTGCTTGAAGCTATAACTTATAATTCTGGATTTTATGGTCGTTTCTTGGTATTGGCCCAAATTGGCGTTGGTTGTACAGTATGGTATGGTTATGCAATAAACGGCGCTCCTCTGACTTTGCTGCTTTCGTGTGCGGCGGGCTGTGCTGGCTGA

Protein sequence

MTGWKNKEREGGRRWKKEGEKETEKKISPTRTAGAGTGADGCWTRKKKNKKKKKKRKKKKKKEMVDWSYNAILELIGCSGREKMQRNEKSKRGKKSNLGQINESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILKFEGFSEIHAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGYAINGAPLTLLLSCAAGCAG

Homology

[Close]

BLAST of Lag0038555 vs. NCBI nr
Match: XP_022159425.1 (uncharacterized protein LOC111025849 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 5.4e-44
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 108 YASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILKFEGFSEI 167
           Y  + GF+FMPGQSDF+LKNLRLPETLDGLKGLRD LGLT AKDSLTNRG LKFEGFS I
Sbjct: 49  YILSLGFRFMPGQSDFLLKNLRLPETLDGLKGLRDQLGLTLAKDSLTNRGTLKFEGFSSI 108

Query: 168 HAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
           HAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYG+
Sbjct: 109 HAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGF 150

[Close]

BLAST of Lag0038555 vs. NCBI nr
Match: CDP17413.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 181.4 bits (459), Expect = 8.7e-42
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 101 INESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILK 160
           +  + A Y  + GF+FMPGQ +F+ KNLRLP+TLDGLKGLR+NLGLT AKD+LTNRGILK
Sbjct: 98  LTSNSASYLLSLGFRFMPGQGEFLFKNLRLPDTLDGLKGLRENLGLTLAKDTLTNRGILK 157

Query: 161 FEGFSEIHAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
           F+G SEIHAKGSL+MNRVLLEAITYN GFYGRFLVLAQIGVGCTVWYG+
Sbjct: 158 FKGLSEIHAKGSLMMNRVLLEAITYNDGFYGRFLVLAQIGVGCTVWYGF 206

[Close]

BLAST of Lag0038555 vs. NCBI nr
Match: CBJ23356.1 (hypothetical protein [Beta vulgaris subsp. maritima])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-25
Identity = 60/110 (54.55%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 101 INESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILK 160
           I E  + Y  + GF+FMPGQ++ ++K+LR+PE+LD L+ LRD+LGLT  K +L +  +LK
Sbjct: 117 ITERSSSYMMSLGFRFMPGQAECLVKDLRVPESLDALRNLRDSLGLTLTKSNLCSGPLLK 176

Query: 161 FEGFSEIHA-KGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
            +G S++ A + S+L +RVL+EAIT++SG+YGRFLVL Q+GVGCTVWYG+
Sbjct: 177 LKGLSDLVANQSSMLASRVLVEAITFHSGYYGRFLVLVQMGVGCTVWYGF 226

[Close]

BLAST of Lag0038555 vs. NCBI nr
Match: CAA71807.1 (hypothetical protein [Beta vulgaris subsp. maritima])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-25
Identity = 60/110 (54.55%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 101 INESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILK 160
           I E  + Y  + GF+FMPGQ++ ++K+LR+PE+LD L+ LRD+LGLT  K +L +  +LK
Sbjct: 117 ITERSSSYMMSLGFRFMPGQAECLVKDLRVPESLDALRNLRDSLGLTLTKSNLCSGPLLK 176

Query: 161 FEGFSEIHA-KGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
            +G S++ A + S+L +RVL+EAIT++SG+YGRFLVL Q+GVGCTVWYG+
Sbjct: 177 LKGLSDLVANQSSMLASRVLVEAITFHSGYYGRFLVLVQMGVGCTVWYGF 226

[Close]

BLAST of Lag0038555 vs. NCBI nr
Match: YP_008992338.1 (hypothetical protein Salmi_Mp074 [Salvia miltiorrhiza] >AGU16603.1 hypothetical protein Salmi_Mp074 [Salvia miltiorrhiza])

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-13
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 95  KSNLGQINESFAVYAS-------NYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLT 154
           KS+L +I  +     S       N  F+ +P Q  FI + LRLP+T DGL   ++ LGL 
Sbjct: 85  KSSLNEIPSTICDLTSKSIGLFLNLSFRILPNQDSFITQKLRLPKTKDGLIAFKNKLGL- 144

Query: 155 FAKDSLTNRGILKFEGFSEIHAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWY 214
            +K S      + ++ F E   K + + + +L++AITYN+  YGRFLVL Q+G+ CTVWY
Sbjct: 145 -SKPSNVGLSQISYDSFME---KATNIYSGILVDAITYNNSHYGRFLVLVQLGLRCTVWY 204

Query: 215 GYAINGAPLTLLLSC 223
           G+   GA L + + C
Sbjct: 205 GFH-PGAELGIPVDC 213

[Close]

BLAST of Lag0038555 vs. ExPASy TrEMBL
Match: A0A6J1DYP8 (uncharacterized protein LOC111025849 OS=Momordica charantia OX=3673 GN=LOC111025849 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 108 YASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILKFEGFSEI 167
           Y  + GF+FMPGQSDF+LKNLRLPETLDGLKGLRD LGLT AKDSLTNRG LKFEGFS I
Sbjct: 49  YILSLGFRFMPGQSDFLLKNLRLPETLDGLKGLRDQLGLTLAKDSLTNRGTLKFEGFSSI 108

Query: 168 HAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
           HAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYG+
Sbjct: 109 HAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGF 150

[Close]

BLAST of Lag0038555 vs. ExPASy TrEMBL
Match: A0A068VCK2 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00002783001 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-42
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 101 INESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILK 160
           +  + A Y  + GF+FMPGQ +F+ KNLRLP+TLDGLKGLR+NLGLT AKD+LTNRGILK
Sbjct: 98  LTSNSASYLLSLGFRFMPGQGEFLFKNLRLPDTLDGLKGLRENLGLTLAKDTLTNRGILK 157

Query: 161 FEGFSEIHAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
           F+G SEIHAKGSL+MNRVLLEAITYN GFYGRFLVLAQIGVGCTVWYG+
Sbjct: 158 FKGLSEIHAKGSLMMNRVLLEAITYNDGFYGRFLVLAQIGVGCTVWYGF 206

[Close]

BLAST of Lag0038555 vs. ExPASy TrEMBL
Match: O47882 (Uncharacterized protein orf1 OS=Beta vulgaris subsp. maritima OX=350892 GN=orf1 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-26
Identity = 60/110 (54.55%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 101 INESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILK 160
           I E  + Y  + GF+FMPGQ++ ++K+LR+PE+LD L+ LRD+LGLT  K +L +  +LK
Sbjct: 117 ITERSSSYMMSLGFRFMPGQAECLVKDLRVPESLDALRNLRDSLGLTLTKSNLCSGPLLK 176

Query: 161 FEGFSEIHA-KGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
            +G S++ A + S+L +RVL+EAIT++SG+YGRFLVL Q+GVGCTVWYG+
Sbjct: 177 LKGLSDLVANQSSMLASRVLVEAITFHSGYYGRFLVLVQMGVGCTVWYGF 226

[Close]

BLAST of Lag0038555 vs. ExPASy TrEMBL
Match: E8ZCE5 (Uncharacterized protein orf329b OS=Beta vulgaris subsp. maritima OX=350892 GN=orf329b PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-26
Identity = 60/110 (54.55%), Postives = 87/110 (79.09%), Query Frame = 0


Query: 101 INESFAVYASNYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLTFAKDSLTNRGILK 160
           I E  + Y  + GF+FMPGQ++ ++K+LR+PE+LD L+ LRD+LGLT  K +L +  +LK
Sbjct: 117 ITERSSSYMMSLGFRFMPGQAECLVKDLRVPESLDALRNLRDSLGLTLTKSNLCSGPLLK 176

Query: 161 FEGFSEIHA-KGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWYGY 210
            +G S++ A + S+L +RVL+EAIT++SG+YGRFLVL Q+GVGCTVWYG+
Sbjct: 177 LKGLSDLVANQSSMLASRVLVEAITFHSGYYGRFLVLVQMGVGCTVWYGF 226

[Close]

BLAST of Lag0038555 vs. ExPASy TrEMBL
Match: V9P5B6 (Uncharacterized protein OS=Salvia miltiorrhiza OX=226208 GN=orf302 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.8e-14
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 95  KSNLGQINESFAVYAS-------NYGFQFMPGQSDFILKNLRLPETLDGLKGLRDNLGLT 154
           KS+L +I  +     S       N  F+ +P Q  FI + LRLP+T DGL   ++ LGL 
Sbjct: 85  KSSLNEIPSTICDLTSKSIGLFLNLSFRILPNQDSFITQKLRLPKTKDGLIAFKNKLGL- 144

Query: 155 FAKDSLTNRGILKFEGFSEIHAKGSLLMNRVLLEAITYNSGFYGRFLVLAQIGVGCTVWY 214
            +K S      + ++ F E   K + + + +L++AITYN+  YGRFLVL Q+G+ CTVWY
Sbjct: 145 -SKPSNVGLSQISYDSFME---KATNIYSGILVDAITYNNSHYGRFLVLVQLGLRCTVWY 204

Query: 215 GYAINGAPLTLLLSC 223
           G+   GA L + + C
Sbjct: 205 GFH-PGAELGIPVDC 213

The following BLAST results are available for this feature:

BLAST of Lag0038555 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159425.1	5.4e-44	89.22	uncharacterized protein LOC111025849 [Momordica charantia]	[more]
CDP17413.1	8.7e-42	77.98	unnamed protein product [Coffea canephora]	[more]
CBJ23356.1	1.1e-25	54.55	hypothetical protein [Beta vulgaris subsp. maritima]	[more]
CAA71807.1	1.1e-25	54.55	hypothetical protein [Beta vulgaris subsp. maritima]	[more]
YP_008992338.1	1.0e-13	38.52	hypothetical protein Salmi_Mp074 [Salvia miltiorrhiza] >AGU16603.1 hypothetical ...	[more]

BLAST of Lag0038555 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYP8	2.6e-44	89.22	uncharacterized protein LOC111025849 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A068VCK2	4.2e-42	77.98	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00002783001 PE=4 ...	[more]
O47882	5.5e-26	54.55	Uncharacterized protein orf1 OS=Beta vulgaris subsp. maritima OX=350892 GN=orf1 ...	[more]
E8ZCE5	5.5e-26	54.55	Uncharacterized protein orf329b OS=Beta vulgaris subsp. maritima OX=350892 GN=or...	[more]
V9P5B6	4.8e-14	38.52	Uncharacterized protein OS=Salvia miltiorrhiza OX=226208 GN=orf302 PE=4 SV=1	[more]

BLAST of Lag0038555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038555.1	Lag0038555.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion