Lag0038552 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038552
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S18
Location	chr2: 20156176 .. 20159514 (+)
RNA-Seq Expression	Lag0038552
Synteny	Lag0038552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACTACAGTTTCTTCTTTGCTCTGTTTTCACTTCTTCTCTTCTATGTTCGGTTCTTGAATACCCTTGAATTACTCGTTAGGGTTTTATGGTTGATTGTGTTGATTTGGCCTTTTCATTTGTTGCTTCTGTATCTAGTCGCTGGTAGCAAACGAGGATTTTCAGCACATTCTCCGTGTGCTGAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTTGCCAACATTGTATGCAAGAAGGCTGATGTCGACATGAACAAGAGGTATTATATGCTCTACTTGTCCATTTTTTTTTCCTTCCCTTCGTTGCCGCTTGTCATCTATCTAGTTTGATAGAAAAATTTGAGAATTAGGAGTATTAAAAGGGTTTCTTCCGTTGTTTTTAATTCTGCCTTTTAGATAAATGATACGGATTTAAAGTACTCGTTCCCAATTATTTGTAGAGAAATAAGCTTTATGTTTTACATGAAAAAGATTAAAGATGCGACTCATGTGAGATAGTTAGCAAAAAAGTAGGAGTTTGACGTGGGATTGCTTATGGTTAAATCGTTCAAAGAATTGGGATATTTGAAGGAGTTTATCGTTGTTAGAATAACAATATTGGTGTAAACACGTTATTATATTTTTCTGCATGATCAGTTCAATCACTACATAACATGATTTCTGCTGTATTATTATAACATCTTCTTTGGGTCAATTATTGTACGATTTAGGATTTTTCTAGTAGTTGGTTCATGTCTCTGTGGCTGGAATCTGATAGTAGGATGCAGCATATTATTGGAAGGACAAGAAAAATACATTGAAAACGAAAGGTGTAGTACATGACCTTCGAATCCATGGGTCTTCACTTAGAAAAACCTTTGCTAGGACAAGGATTTAACTCTTTTGACTACTGGGTCTAGTTGACAAAAACAAAAAAAAGAGACTACAAAATTCTGACCTGAGTTATAAAAGGAAGAAACAAGAACAGAAATATGAACTGCAACTAGACTTTCGGTTGCTGGAATTATCTGCTTCAGCTTCTTTCTTCCCTTTTCTTTGATATAATTTAACACCTCCTCGTGCTTATCTGGGGCTGATATGGAAGCAATGTATGCACCGATGGCTGAATTTTTCTTTTTCAACGGATATATATTTCACCAGATGAAAACTATTTCTTCTTATAACCAAACTGCAGCAACCCAAAACAAACACAAAAACCCCACACTGAATGATCAAAAGGACTAAACATAGCATGGCCTTTCAGCTTAATCTGAAAATCATCCTAAAAACTAGTCTGAGAGAATAAACCAAGTGCCTGTAGTTCATAAATAGAATGAGACCAAATTCTTAACGAAGACTTCATGGAAATTGCCACATGATCAGAAAATCATGACAGAAGCCAAGCACCATCTGGACCCTTTGGATATCTATTGGAATGTTTGGAGATAATTTAAATTTCTTCATATGCCATAGAGATAGAAACTTTTGCAGCATCTGAAGCACCTGTTGAGATCCTGGTTTTCTGATAGCCCTTGTCAACTCCTCTAGACTTTGGGCAAAAACTGATAGCTGTAAGAAGATTTGGCTTTGAACCACTTATTTGTTGAGATCCCTTCACAAAGGCTGTGTTTTTCTTCAGTATAAAAGATTAGCAGCTGCAACAGTGTTAATGGTATTTGGAATATCTCATGAGAGACCGGGTAGGAGTTGGCTTATTAAACACACATTTGTTGCTTGCTGCAGAAGTTTATTTAGTAAAGTTTATGTTTGCAGTTTTTTTAGCACGTCTAACTTCATAGTTATTTATATTTTCTTTTGTTATATGTTTAATGATCTAATATGAATTTGGTTTTGAATTGTTGTTCCTTCTATTATCACCTCAGAGGATGTTACAATTCAGAGTTTGGGGAAAACTCAAGGGGGCTTGTCTCATTTACATCTTTGTTTCCATTTGTTATTTTTACTCCCAGGGCTGGTGAACTAACTGCAGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATCCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGTAACTTCTGCTTTTTGTGTTAGTTTTAACAGTCCATTTGAAACTTATTTTTGTTTTCTTTTTTTAAAAATAGAAAATAAATAGTTTACTGAGGAAAGACTTGTTTGTTTGACACGACAATTATTAAAATCAGTTTTCGAAGGAAAAAAAAACAGCAGAATTTTCTATGTTCCATTGTGTGTTTTGTATAAATTTATTTGTTGATAATTGATATGTGATAATGAACTATTTTTGACGCCGAGCTTGGTTGCGCGGCCTTGTGACCCAAGTGGGGGCTTTGATGTGATGGTACGAGGTTTCACTCTGTTGGGTCGGTTCTGATGTGGCTTAATTCTGGTCTGCTCGTTTCAAGCAAGGAGCCAAGCTCTGGGGCTTGGGCTAAGGCTCACGGCTTCATGGGCTTCTAATGCGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCAATGAAAACCTGGTTTCACAGAGCAATGAAAACCTCTCACTCCTTGCAGTGGGAGGATAATGGGCCATGTCAATTGGATCCAATATTGACCCAGTGGGGTGGGACCGGACCGAACCATCATTTTTAAAAAAGTGAACTAAAAAAAAGGAAACTATTTTTGATGTATAGTTTGAAATATATTCTGTTGTAATTTTGAATTAATATAGAAAGATAAATGAGAGCAGAACATATCTTTCCCATCCGTTTTCAGGATTAAAACAATAAAAAAAGCAACAGTTTTAAAGGCTCAATCTACCAACCAGCTCTTAGGTACAATATTAAAAAAAATGAACCCTAACATCCCCTTATGTGTTGGTGTCATATTCAACATGCATGCCGGTTTAGTTTTGAAGTGCTTAAAATAATGCTTTCACTGATTAGGTATGGCCCTTGTAGTCACTCCTTGCATTGACTCTGATAATATTCTTGAAGTGATTCTGCTAATGGCTGATATTTTCTTTCTTTCTTTTTATGATTTTGGGGGATAATCCCGGGATATTGAATTCACCGTACTCCTTGCATCATGTATGTTCAATGTCCATCCAACTAATCTTTGGGACAATGACTGCAGGAACCACCGAGGTCTAAGGCACTATTGGGGCCTCCGAGTCCGTGGTCAGCACACCAAAACCACTGGTCGCCGAGGGAAAACCGTTGGTGTCTCGAAGAAGCGTTGA

mRNA sequence

ATGTCGCTGGTAGCAAACGAGGATTTTCAGCACATTCTCCGTGTGCTGAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTTGCCAACATTGTATGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCAGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATCCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTATTGGGGCCTCCGAGTCCGTGGTCAGCACACCAAAACCACTGGTCGCCGAGGGAAAACCGTTGGTGTCTCGAAGAAGCGTTGA

Coding sequence (CDS)

ATGTCGCTGGTAGCAAACGAGGATTTTCAGCACATTCTCCGTGTGCTGAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTTGCCAACATTGTATGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCAGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATCCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTATTGGGGCCTCCGAGTCCGTGGTCAGCACACCAAAACCACTGGTCGCCGAGGGAAAACCGTTGGTGTCTCGAAGAAGCGTTGA

Protein sequence

MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

Homology

[Close]

BLAST of Lag0038552 vs. NCBI nr
Match: XP_004139687.1 (40S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_038884290.1 40S ribosomal protein S18 [Benincasa hispida] >XP_038896640.1 40S ribosomal protein S18 [Benincasa hispida] >KGN44457.1 hypothetical protein Csa_016630 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 5.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Lag0038552 vs. NCBI nr
Match: KAA0059528.1 (40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK14112.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 5.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 23  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 82

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 83  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 142

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 143 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 174

[Close]

BLAST of Lag0038552 vs. NCBI nr
Match: KAA0046827.1 (40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK04510.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 5.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 28  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 87

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 88  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 147

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 148 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 179

[Close]

BLAST of Lag0038552 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >XP_031251561.1 40S ribosomal protein S18-like [Pistacia vera] >XP_031258282.1 40S ribosomal protein S18-like [Pistacia vera] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300v8 [Manihot esculenta])

HSP 1 Score: 303.9 bits (777), Expect = 7.7e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Lag0038552 vs. NCBI nr
Match: XP_021902783.1 (40S ribosomal protein S18 isoform X1 [Carica papaya])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKG+GRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Lag0038552 vs. ExPASy Swiss-Prot
Match: P34788 (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-79
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Lag0038552 vs. ExPASy Swiss-Prot
Match: Q8ISP0 (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 118/152 (77.63%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Lag0038552 vs. ExPASy Swiss-Prot
Match: Q8IT98 (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 115/152 (75.66%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]

BLAST of Lag0038552 vs. ExPASy Swiss-Prot
Match: Q8JGS9 (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-63
Identity = 113/152 (74.34%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Lag0038552 vs. ExPASy Swiss-Prot
Match: Q90YQ5 (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 112/152 (73.68%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

The following BLAST results are available for this feature:

BLAST of Lag0038552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139687.1	5.9e-79	100.00	40S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protei...	[more]
KAA0059528.1	5.9e-79	100.00	40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK14112.1 40S ...	[more]
KAA0046827.1	5.9e-79	100.00	40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK04510.1 40S ...	[more]
XP_002524340.1	7.7e-79	99.34	40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal prote...	[more]
XP_021902783.1	1.0e-78	98.68	40S ribosomal protein S18 isoform X1 [Carica papaya]	[more]

BLAST of Lag0038552 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P34788	2.1e-79	96.05	40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1	[more]
Q8ISP0	4.6e-66	77.63	40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1	[more]
Q8IT98	5.1e-65	75.66	40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1	[more]
Q8JGS9	2.8e-63	74.34	40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1	[more]
Q90YQ5	1.1e-62	73.68	40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 92..142 e-value: 1.4E-28 score: 100.4
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 14..142 e-value: 4.1E-57 score: 192.1
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 4..152 e-value: 1.9E-40 score: 135.8
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 12..152 score: 22.776844
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 15..145 score: 34.840778
None	No IPR available	GENE3D	1.10.8.50		coord: 1..80 e-value: 1.2E-35 score: 123.6
None	No IPR available	PANTHER	PTHR10871:SF3	40S RIBOSOMAL PROTEIN S18-RELATED	coord: 1..152
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..152
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 121..134
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 13..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038552.1	Lag0038552.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding