Lag0038536 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038536
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed DNA polymerase
Location	chr2: 19901017 .. 19901714 (+)
RNA-Seq Expression	Lag0038536
Synteny	Lag0038536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAGGAACGTTATCAAACGAGCCCTAAATGGTCAGGACCGTTTATTGTGATGGAGGTTTTTCCCCATGGAGCAATTACTTTGCAGGATGAGAAAGATGGGAGAGTGTTCAAGGTGAATGGACAGCGTGTGAAGCATTATTGGGGTGAGGAGTTTCAGACGAAACATTCTTCCCTGAGATTGATTGATGATTGCAAGAGCAAGATGTTTGCGGGAGCATTTTACAAGAGCAAAATTTTGAGCTCCCAGTGTTTGTATTGATTTTATTTTTCCCTTATTTGTTTTTAATTTCGATAGGTTAGATTTAATTTTGCATGATTTATTAGATTTTATCTTTAAGTATTTTTATTATTTGGTAGTTTAGATTTTATATATTTTGTTTTGAATTTGATTTGATTTTCGGGTTATTTATTTGGATTATCTGTGGATTATCTTTTCGTTAATTAGATTTTATTAGATTTTATTATTTGAATTCTGTTTAAATTAATAAAGATTCTCTCTAATTTATTTGGCTTCTCTTGAAAAAGATAAAATTTGATTTAGTCGGTTAAAATTAAATTTAAATTTAAAAGATATGATTTTCCCACTTCGAAATTTGAATTCCGTATCAGAGATTCTTCAGGATTCAGCAGGTTGTTGCAGCAAAAGTTATGGCTGGAGCAAATCGTCCGAATAGGAAGGGTTTGTCAGAGTAA

mRNA sequence

ATGAAACAGGAACGTTATCAAACGAGCCCTAAATGGTCAGGACCGTTTATTGTGATGGAGGTTTTTCCCCATGGAGCAATTACTTTGCAGGATGAGAAAGATGGGAGAGTGTTCAAGGTGAATGGACAGCGTGTGAAGCATTATTGGGGTGAGGAGTTTCAGACGAAACATTCTTCCCTGAGATTGATTGATGATTGCAAGAGCAAGATGTTTGCGGGAGCATTTTACAAGAGCAAAATTTTGAGCTCCCAGATTCAGCAGGTTGTTGCAGCAAAAGTTATGGCTGGAGCAAATCGTCCGAATAGGAAGGGTTTGTCAGAGTAA

Coding sequence (CDS)

ATGAAACAGGAACGTTATCAAACGAGCCCTAAATGGTCAGGACCGTTTATTGTGATGGAGGTTTTTCCCCATGGAGCAATTACTTTGCAGGATGAGAAAGATGGGAGAGTGTTCAAGGTGAATGGACAGCGTGTGAAGCATTATTGGGGTGAGGAGTTTCAGACGAAACATTCTTCCCTGAGATTGATTGATGATTGCAAGAGCAAGATGTTTGCGGGAGCATTTTACAAGAGCAAAATTTTGAGCTCCCAGATTCAGCAGGTTGTTGCAGCAAAAGTTATGGCTGGAGCAAATCGTCCGAATAGGAAGGGTTTGTCAGAGTAA

Protein sequence

MKQERYQTSPKWSGPFIVMEVFPHGAITLQDEKDGRVFKVNGQRVKHYWGEEFQTKHSSLRLIDDCKSKMFAGAFYKSKILSSQIQQVVAAKVMAGANRPNRKGLSE

Homology

[Close]

BLAST of Lag0038536 vs. NCBI nr
Match: XP_024019127.1 (uncharacterized protein LOC112090925 [Morus notabilis])

HSP 1 Score: 80.5 bits (197), Expect = 9.8e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 11  KWSGPFIVMEVFPHGAITLQDEKDGRVFKVNGQRVKHYWGEEFQTKHSSLRLIDD 66
           +WSGPF V  VFPHGA+ LQ+EK GR F VNGQRVKHYWG   +   +S+ L DD
Sbjct: 113 RWSGPFTVAAVFPHGAVELQEEKSGRKFLVNGQRVKHYWGGPMERSKTSVTLSDD 167

[Close]

BLAST of Lag0038536 vs. NCBI nr
Match: XP_030505514.1 (uncharacterized protein LOC115720505 [Cannabis sativa])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 11  KWSGPFIVMEVFPHGAITLQDEKDGRVFKVNGQRVKHYWGEEFQTKHSSLRLID 65
           +WSGPF VME++P GA+ ++DEK GR FKVNGQ +KHYWGEE   + +S+ L D
Sbjct: 224 RWSGPFTVMELYPFGAVVVKDEKSGREFKVNGQLLKHYWGEEVNREKTSISLED 277

[Close]

BLAST of Lag0038536 vs. NCBI nr
Match: XP_024028687.1 (uncharacterized protein LOC112093776 [Morus notabilis])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 11  KWSGPFIVMEVFPHGAITLQDEKDGRVFKVNGQRVKHYWGEEFQTKHSSLRLIDD 66
           +WSGPF V  VFPHG + LQ+EK GR F VNGQR+KHYWG   +   +S+ L DD
Sbjct: 71  RWSGPFTVATVFPHGVVELQEEKSGRKFLVNGQRIKHYWGRPMERSKTSVTLSDD 125

[Close]

BLAST of Lag0038536 vs. NCBI nr
Match: XP_030504471.1 (uncharacterized protein LOC115719527 [Cannabis sativa])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 11  KWSGPFIVMEVFPHGAITLQDEKDGRVFKVNGQRVKHYWGEEFQTKHSSLRLIDDCKS 69
           +WSGPF VMEV+P GA+ ++DEK  R FKVNGQR+KHYWGEE       ++  +D K+
Sbjct: 48  RWSGPFTVMEVYPFGAVVVKDEKSEREFKVNGQRLKHYWGEETFLGSEKMKAKNDIKA 105

[Close]

BLAST of Lag0038536 vs. NCBI nr
Match: XP_024027610.1 (uncharacterized protein LOC112093436 [Morus notabilis])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 11  KWSGPFIVMEVFPHGAITLQDEKDGRVFKVNGQRVKHYWGEEFQTKHSSLRLID 65
           +WSGPF+V  V+PHGA+ +  E  GR FKVNGQR+KHYWG+E   + +S+ + D
Sbjct: 71  RWSGPFVVHSVYPHGAVEIAAEDSGRTFKVNGQRLKHYWGDEINRQKTSISVQD 124

The following BLAST results are available for this feature:

BLAST of Lag0038536 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024019127.1	9.8e-12	61.82	uncharacterized protein LOC112090925 [Morus notabilis]	[more]
XP_030505514.1	2.2e-11	59.26	uncharacterized protein LOC115720505 [Cannabis sativa]	[more]
XP_024028687.1	2.2e-11	58.18	uncharacterized protein LOC112093776 [Morus notabilis]	[more]
XP_030504471.1	1.1e-10	55.17	uncharacterized protein LOC115719527 [Cannabis sativa]	[more]
XP_024027610.1	1.8e-10	53.70	uncharacterized protein LOC112093436 [Morus notabilis]	[more]

BLAST of Lag0038536 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038536.1	Lag0038536.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016779	nucleotidyltransferase activity