Lag0038514 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038514
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	B-like cyclin
Location	chr2: 19234100 .. 19234564 (+)
RNA-Seq Expression	Lag0038514
Synteny	Lag0038514

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTAGAACACCAACCCCAACACTCGATGCCCTTTTCTGTGAAGAACTCTGCTGCGAGGAGGATTTGGATGGAAATGGGACCGATCAGTATACTGAATACTGGGAAACTTTAAGAAAAGATCAACCTTTTCTCTCGTTAAATTTAGTGGAAAATGACCCACTTTGGGATGATAACGAGCTGCGCTCTCTAATTTTAAAAGAAGAGCAGACCGATGTTTGTTATGCTTTTGTGAGCTCTGATGGGTATCTAATTGAAGCTCGAAATAAGGAATTGTCCTGGATTTTTATAGTTAAACATCACTATGCTTTATCTGCTTTGACTTCTCTTCTTATTGTTAACTACTTTGATAGATTCATTTCGAATGTAAGCTTTCAGAGGGACAAGCCATGGATGAGTCAGCTTGTGGTTGTTGCTGAAGGAATTGCATCCCCTAGCAGAAGCGATTTTCACCGATCGTGA

mRNA sequence

ATGAGTTTTAGAACACCAACCCCAACACTCGATGCCCTTTTCTGTGAAGAACTCTGCTGCGAGGAGGATTTGGATGGAAATGGGACCGATCAGTATACTGAATACTGGGAAACTTTAAGAAAAGATCAACCTTTTCTCTCGTTAAATTTAGTGGAAAATGACCCACTTTGGGATGATAACGAGCTGCGCTCTCTAATTTTAAAAGAAGAGCAGACCGATGTTTGTTATGCTTTTGTGAGCTCTGATGGGTATCTAATTGAAGCTCGAAATAAGGAATTGTCCTGGATTTTTATAGTTAAACATCACTATGCTTTATCTGCTTTGACTTCTCTTCTTATTGTTAACTACTTTGATAGATTCATTTCGAATGTAAGCTTTCAGAGGGACAAGCCATGGATGAGTCAGCTTGTGGTTGTTGCTGAAGGAATTGCATCCCCTAGCAGAAGCGATTTTCACCGATCGTGA

Coding sequence (CDS)

ATGAGTTTTAGAACACCAACCCCAACACTCGATGCCCTTTTCTGTGAAGAACTCTGCTGCGAGGAGGATTTGGATGGAAATGGGACCGATCAGTATACTGAATACTGGGAAACTTTAAGAAAAGATCAACCTTTTCTCTCGTTAAATTTAGTGGAAAATGACCCACTTTGGGATGATAACGAGCTGCGCTCTCTAATTTTAAAAGAAGAGCAGACCGATGTTTGTTATGCTTTTGTGAGCTCTGATGGGTATCTAATTGAAGCTCGAAATAAGGAATTGTCCTGGATTTTTATAGTTAAACATCACTATGCTTTATCTGCTTTGACTTCTCTTCTTATTGTTAACTACTTTGATAGATTCATTTCGAATGTAAGCTTTCAGAGGGACAAGCCATGGATGAGTCAGCTTGTGGTTGTTGCTGAAGGAATTGCATCCCCTAGCAGAAGCGATTTTCACCGATCGTGA

Protein sequence

MSFRTPTPTLDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLWDDNELRSLILKEEQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSFQRDKPWMSQLVVVAEGIASPSRSDFHRS

Homology

[Close]

BLAST of Lag0038514 vs. NCBI nr
Match: XP_038883645.1 (cyclin-D3-3-like [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 6.7e-54
Identity = 103/131 (78.63%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 10  LDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLWDDNELRSLILKE 69
           LDALFCEELCC+EDL  NG+D+ T+YWETLRKDQPF   NLVE+DPLW DN+L SLI KE
Sbjct: 19  LDALFCEELCCDEDLPANGSDEDTQYWETLRKDQPFFDFNLVESDPLWADNQLHSLISKE 78

Query: 70  EQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSFQRD 129
           EQT VCYA +SSD YLIEARN+ LSWIF VKHHYA SALTSLL VNYFDRF+SNV FQRD
Sbjct: 79  EQTQVCYASMSSDDYLIEARNEALSWIFRVKHHYAFSALTSLLAVNYFDRFVSNVRFQRD 138

Query: 130 KPWMSQLVVVA 141
           KPWMSQL  VA
Sbjct: 139 KPWMSQLAAVA 149

[Close]

BLAST of Lag0038514 vs. NCBI nr
Match: XP_022963209.1 (cyclin-D3-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-52
Identity = 102/137 (74.45%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 5   TPTPTLDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLW-DDNELR 64
           T +  LDALFCE+LCC+ED DGNGT + ++YWETLRKDQPFL++NL+E DPLW DD EL+
Sbjct: 14  TQSYVLDALFCEDLCCDEDFDGNGTVEDSDYWETLRKDQPFLAINLLEKDPLWEDDEELQ 73

Query: 65  SLILKEEQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISN 124
           SLI KEEQT VC A V+SDGYLI+ARN+ LSWIF VKHHYA SA TSLL VNYFDRF+SN
Sbjct: 74  SLISKEEQTHVCNASVTSDGYLIQARNEALSWIFSVKHHYAFSAFTSLLAVNYFDRFVSN 133

Query: 125 VSFQRDKPWMSQLVVVA 141
           V FQRDKPWMSQL  VA
Sbjct: 134 VRFQRDKPWMSQLAAVA 150

[Close]

BLAST of Lag0038514 vs. NCBI nr
Match: XP_022963210.1 (cyclin-D3-3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-52
Identity = 102/137 (74.45%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 5   TPTPTLDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLW-DDNELR 64
           T +  LDALFCE+LCC+ED DGNGT + ++YWETLRKDQPFL++NL+E DPLW DD EL+
Sbjct: 14  TQSYVLDALFCEDLCCDEDFDGNGTVEDSDYWETLRKDQPFLAINLLEKDPLWEDDEELQ 73

Query: 65  SLILKEEQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISN 124
           SLI KEEQT VC A V+SDGYLI+ARN+ LSWIF VKHHYA SA TSLL VNYFDRF+SN
Sbjct: 74  SLISKEEQTHVCNASVTSDGYLIQARNEALSWIFSVKHHYAFSAFTSLLAVNYFDRFVSN 133

Query: 125 VSFQRDKPWMSQLVVVA 141
           V FQRDKPWMSQL  VA
Sbjct: 134 VRFQRDKPWMSQLAAVA 150

[Close]

BLAST of Lag0038514 vs. NCBI nr
Match: TYK12863.1 (cyclin-D3-3 [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.7e-52
Identity = 101/131 (77.10%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 10  LDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLWDDNELRSLILKE 69
           LDALFCEELCC+EDL  NG+D+ T+YWETLRKDQPFL+ NL+ENDPLW DN+L SLI KE
Sbjct: 20  LDALFCEELCCDEDLPVNGSDEDTQYWETLRKDQPFLAFNLLENDPLWADNQLHSLISKE 79

Query: 70  EQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSFQRD 129
           EQT V YA + SD YLIEARN+ LSWIF VKHHYA S LTSLL VNYFDRF+SNV FQRD
Sbjct: 80  EQTQVSYASMCSDDYLIEARNEALSWIFRVKHHYAFSVLTSLLAVNYFDRFVSNVRFQRD 139

Query: 130 KPWMSQLVVVA 141
           KPWMSQL  VA
Sbjct: 140 KPWMSQLAAVA 150

[Close]

BLAST of Lag0038514 vs. NCBI nr
Match: XP_008440318.1 (PREDICTED: cyclin-D3-3 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 3.7e-52
Identity = 101/131 (77.10%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 10  LDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLWDDNELRSLILKE 69
           LDALFCEELCC+EDL  NG+D+ T+YWETLRKDQPFL+ NL+ENDPLW DN+L SLI KE
Sbjct: 20  LDALFCEELCCDEDLPVNGSDEDTQYWETLRKDQPFLAFNLLENDPLWADNQLHSLISKE 79

Query: 70  EQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSFQRD 129
           EQT V YA + SD YLIEARN+ LSWIF VKHHYA S LTSLL VNYFDRF+SNV FQRD
Sbjct: 80  EQTQVSYASMCSDDYLIEARNEALSWIFRVKHHYAFSVLTSLLAVNYFDRFVSNVRFQRD 139

Query: 130 KPWMSQLVVVA 141
           KPWMSQL  VA
Sbjct: 140 KPWMSQLAAVA 150

[Close]

BLAST of Lag0038514 vs. ExPASy Swiss-Prot
Match: Q9FGQ7 (Cyclin-D3-2 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 10  LDALFCEELC--CEEDLDGNGTDQYTEYW-ETLRKDQPFLSLNLVENDPLWDDNELRSLI 69
           LD L+CEE     E+DLD +G   + E   E++ K Q    L++     LWDD+E+ SLI
Sbjct: 18  LDGLYCEEETGFVEDDLDDDGDLDFLEKSDESVVKFQFLPLLDMF----LWDDDEILSLI 77

Query: 70  LKEEQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSF 129
            KE +T+ C+     DG+L+  R + L W+  VK HY  ++LT++L VNYFDRF++++  
Sbjct: 78  SKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKL 137

Query: 130 QRDKPWMSQLVVVA 141
           Q DKPWMSQLV VA
Sbjct: 138 QTDKPWMSQLVAVA 147

[Close]

BLAST of Lag0038514 vs. ExPASy Swiss-Prot
Match: Q9SN11 (Cyclin-D3-3 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24
Identity = 64/139 (46.04%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 2   SFRTPTPTLDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLWDDNE 61
           S   P   LD LFCEE       +    +Q     E++ K  PFL+L L ++D LWDD+E
Sbjct: 9   SQNAPFCVLDGLFCEE-------ESEFHEQVDLCDESVEK-FPFLNLGLSDHDMLWDDDE 68

Query: 62  LRSLILKEEQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFI 121
           L +LI K+E     Y  +  D +L+  R K L WIF VK HY  ++LT+LL VNYFDRFI
Sbjct: 69  LSTLISKQE--PCLYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFI 128

Query: 122 SNVSFQRDKPWMSQLVVVA 141
           ++  FQ DKPWMSQL  +A
Sbjct: 129 TSRKFQTDKPWMSQLTALA 137

[Close]

BLAST of Lag0038514 vs. ExPASy Swiss-Prot
Match: P42753 (Cyclin-D3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 10  LDALFCEELCCEEDLDGNGTDQYTEYWETLRKDQPFLSLNLVENDPLWDDNELRSLILKE 69
           LDAL+CE    EE  D  G ++  E         PF+   +++ D  W+D +L +L  KE
Sbjct: 19  LDALYCE----EEKWDDEG-EEVEENSSLSSSSSPFV---VLQQDLFWEDEDLVTLFSKE 78

Query: 70  EQTDVCYAFVSSDGYLIEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSFQRD 129
           E+  +       D YL   R + + WI  V  HY  S L ++L + Y D+FI + S QRD
Sbjct: 79  EEQGLS---CLDDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRD 138

Query: 130 KPWMSQLVVVA 141
           KPWM QLV VA
Sbjct: 139 KPWMLQLVSVA 138

[Close]

BLAST of Lag0038514 vs. ExPASy Swiss-Prot
Match: Q69QB8 (Cyclin-D3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD3-1 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 55  PLWDDNELRSLILKEEQTDVCY------AFVSSDGY-LIEARNKELSWIFIVKHHYALSA 114
           PL  D+ + +L+ +EEQ  +          +  DG  L+  R+  + WI+ V   Y    
Sbjct: 49  PLQSDDCIEALLGREEQQHIPMEGYLQRLLLQPDGLDLVAVRSDAIDWIWKVHELYKFGP 108

Query: 115 LTSLLIVNYFDRFISNVSFQRDKPWMSQLVVVA 141
           LT++L VNY DRF+S     +++  M+QL+ VA
Sbjct: 109 LTAVLSVNYLDRFLSVFDLPQEEACMTQLLAVA 141

[Close]

BLAST of Lag0038514 vs. ExPASy Swiss-Prot
Match: Q4KYM5 (Cyclin-D4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-05
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 86  IEARNKELSWIFIVKHHYALSALTSLLIVNYFDRFISNVSFQRDKPWMSQLVVVA 141
           +  R++ + WI+ V  +Y  S++T+ L VNY DRF+S       + WM+QL+ VA
Sbjct: 107 LRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVA 161

The following BLAST results are available for this feature:

BLAST of Lag0038514 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883645.1	6.7e-54	78.63	cyclin-D3-3-like [Benincasa hispida]	[more]
XP_022963209.1	2.1e-52	74.45	cyclin-D3-3-like isoform X1 [Cucurbita moschata]	[more]
XP_022963210.1	2.1e-52	74.45	cyclin-D3-3-like isoform X2 [Cucurbita moschata]	[more]
TYK12863.1	3.7e-52	77.10	cyclin-D3-3 [Cucumis melo var. makuwa]	[more]
XP_008440318.1	3.7e-52	77.10	PREDICTED: cyclin-D3-3 [Cucumis melo]	[more]

BLAST of Lag0038514 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGQ7	2.6e-24	44.78	Cyclin-D3-2 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-2 PE=1 SV=1	[more]
Q9SN11	3.4e-24	46.04	Cyclin-D3-3 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-3 PE=2 SV=1	[more]
P42753	2.2e-15	38.17	Cyclin-D3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD3-1 PE=1 SV=3	[more]
Q69QB8	4.6e-05	32.26	Cyclin-D3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD3-1 PE=2 SV=2	[more]
Q4KYM5	6.0e-05	38.18	Cyclin-D4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-2 PE=2 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 83..144 e-value: 3.1E-7 score: 32.3
None	No IPR available	PANTHER	PTHR10177:SF428	CYCLIN-D3-2	coord: 29..140
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 86..140 e-value: 5.4E-7 score: 29.4
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINS	coord: 29..140
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 93..140 e-value: 4.23598E-4 score: 35.2921
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 56..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038514.1	Lag0038514.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division