Lag0038510 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038510
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr2: 19154361 .. 19155040 (+)
RNA-Seq ExpressionLag0038510
SyntenyLag0038510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTCGTTTTACATGAAAACACTATATTATTACTTGACCCGTACACTTGCGGTAAGCAAATTGCACATCACTACTCAACATTCAACTCTACTGCCCCTGTTTATCTCTCCCCTCAACCATCGATTCCACCATATCCAACCATAACGCCTCCTCTGAATGTTAAACTCACTGACTCCATCTATCTCCTCTGGAAGAATCAGCTGTTGAACCACATTATAGCATTTGATATGAAAGCTTCATTGACGGTACTCCTCCTCCTATGAAGTTCTTGGATGTTGCTCAACAACAGGTAAATCCTCAATTTCTAGTTTGACAAAAATATAATAGGACCCTTATGAGATGGATTTATTCATCATTAAATGAAGATAAATTGGGTGAAATTATTGACTGCTTCTTTGCTTATGAAATATGGGATCATCTTCGGGTTGTCTATGAGTCATCATCTACAGCTAGGATTATGGGCCTTCGGTCACAATTGCAGAAAATTAGGAAAGATCGGTTGTCGGTTTCTCAATATCTTGCCCAAATTAAGGATGTTGCTGACAAATTTTCAGCCATTGGTGAGCCTCTTTCGTATCATGATCATTTAGGGTACATTCTAGAGGGTCTTGGCACTGAATATAATCCGTTTGTACTGATCGTCCCTCACTTGCTGATGTCTGAAGCCTTCTCCTAG

mRNA sequence

ATGACACTCGTTTTACATGAAAACACTATATTATTACTTGACCCGTACACTTGCGGTAAGCAAATTGCACATCACTACTCAACATTCAACTCTACTGCCCCTGTTTATCTCTCCCCTCAACCATCGATTCCACCATATCCAACCATAACGCCTCCTCTGAATGTTAAACTCACTGACTCCATCTATCTCCTCTGGAAGAATCAGCTGTTGAACCACATTATAGCATTTGATATGAAAGCTTCATTGACGTCATCATCTACAGCTAGGATTATGGGCCTTCGGTCACAATTGCAGAAAATTAGGAAAGATCGGTTGTCGGTTTCTCAATATCTTGCCCAAATTAAGGATGTTGCTGACAAATTTTCAGCCATTGGTGAGCCTCTTTCGTATCATGATCATTTAGGGTACATTCTAGAGGGTCTTGGCACTGAATATAATCCGTTTGTACTGATCGTCCCTCACTTGCTGATGTCTGAAGCCTTCTCCTAG

Coding sequence (CDS)

ATGACACTCGTTTTACATGAAAACACTATATTATTACTTGACCCGTACACTTGCGGTAAGCAAATTGCACATCACTACTCAACATTCAACTCTACTGCCCCTGTTTATCTCTCCCCTCAACCATCGATTCCACCATATCCAACCATAACGCCTCCTCTGAATGTTAAACTCACTGACTCCATCTATCTCCTCTGGAAGAATCAGCTGTTGAACCACATTATAGCATTTGATATGAAAGCTTCATTGACGTCATCATCTACAGCTAGGATTATGGGCCTTCGGTCACAATTGCAGAAAATTAGGAAAGATCGGTTGTCGGTTTCTCAATATCTTGCCCAAATTAAGGATGTTGCTGACAAATTTTCAGCCATTGGTGAGCCTCTTTCGTATCATGATCATTTAGGGTACATTCTAGAGGGTCTTGGCACTGAATATAATCCGTTTGTACTGATCGTCCCTCACTTGCTGATGTCTGAAGCCTTCTCCTAG

Protein sequence

MTLVLHENTILLLDPYTCGKQIAHHYSTFNSTAPVYLSPQPSIPPYPTITPPLNVKLTDSIYLLWKNQLLNHIIAFDMKASLTSSSTARIMGLRSQLQKIRKDRLSVSQYLAQIKDVADKFSAIGEPLSYHDHLGYILEGLGTEYNPFVLIVPHLLMSEAFS
Homology
BLAST of Lag0038510 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-22
Identity = 75/189 (39.68%), Postives = 98/189 (51.85%), Query Frame = 0

Query: 29  FNSTAPVYLSPQP---SIPPYPTITPPLNVKLTDSIYLLWKNQLLNHIIA---------- 88
           F    P +L+  P   S  P+PT+  PLNVKL D+ +LLWKNQLLN +IA          
Sbjct: 3   FPPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGT 62

Query: 89  ---------------------------------------------------FDMKASLT- 148
                                                               D+ +SLT 
Sbjct: 63  IMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTR 122

Query: 149 ---SSSTARIMGLRSQLQKIRKDRLSVSQYLAQIKDVADKFSAIGEPLSYHDHLGYILEG 150
              S +TARIMGL+++LQ +RKD  SVSQYLA+IK++ADKF+A+GEPLSY DHL ++L+G
Sbjct: 123 VYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDG 182

BLAST of Lag0038510 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-19
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 68  QLLNHIIAFDMKASL----TSSSTARIMGLRSQLQKIRKDRLSVSQYLAQIKDVADKFSA 127
           +++ +  AFD+  +L     SSS A IMG  SQLQKI+KD L+VSQYLAQIKDV D F+A
Sbjct: 3   EIVGYESAFDIWEALRTVYESSSIAPIMGFCSQLQKIKKDGLTVSQYLAQIKDVLDNFAA 62

Query: 128 IGEPLSYHDHLGYILEGLGTEYNPFV 150
           IGEPLSY DHL YILEGLG+EYNPFV
Sbjct: 63  IGEPLSYRDHLSYILEGLGSEYNPFV 88

BLAST of Lag0038510 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-14
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 91  MGLRSQLQKIRKDRLSVSQYLAQIKDVADKFSAIGEPLSYHDHLGYILEGLGTEYNPFV 150
           M L+++LQKIRKD LS+SQYL+QIKDVADKFS +GE +SY DHL +IL+GLG+EYN FV
Sbjct: 1   MSLKARLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFV 59

BLAST of Lag0038510 vs. NCBI nr
Match: TXG66120.1 (hypothetical protein EZV62_007395 [Acer yangbiense])

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-14
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 69  LLNHIIAFDMKASLT----SSSTARIMGLRSQLQKIRKDRLSVSQYLAQIKDVADKFSAI 128
           ++N+ IA+++  +L+    S+STARI+ L+SQL  +RK+  +++QYL Q KD+ADKF+ +
Sbjct: 63  IVNYGIAYEIWEALSKHFESTSTARILDLKSQLTNLRKEGTTINQYLFQFKDIADKFATV 122

Query: 129 GEPLSYHDHLGYILEGLGTEYNPFVLIVPHLL 157
           GEPLSY  HLGY  EGLG EY+ FV  + +++
Sbjct: 123 GEPLSYRYHLGYFSEGLGPEYDAFVTSIENIV 154

BLAST of Lag0038510 vs. NCBI nr
Match: TXG68750.1 (hypothetical protein EZV62_003685 [Acer yangbiense])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-11
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 57  LTDSIYLLWKNQLLNHII----AFDMKASLTSSSTARIMGL----RSQLQKIRKDRLSVS 116
           L +S+ +   + ++ H I    + + K S+ SSS      L    RSQL  ++K+  +++
Sbjct: 32  LNESLAIEMDHTMVGHEIESKDSIESKDSIESSSLNLRSELPLLARSQLTNLKKEGTTIN 91

Query: 117 QYLAQIKDVADKFSAIGEPLSYHDHLGYILEGLGTEYNPFV 150
           QYL Q K++ DKF+AIGEPLSY DHLGY+LEGLG EY+ FV
Sbjct: 92  QYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFV 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.12.4e-2239.68uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_038887133.12.5e-1966.28uncharacterized protein LOC120077323 [Benincasa hispida][more]
XP_038891713.11.4e-1471.19uncharacterized protein LOC120081111 [Benincasa hispida][more]
TXG66120.12.4e-1447.83hypothetical protein EZV62_007395 [Acer yangbiense][more]
TXG68750.11.5e-1144.55hypothetical protein EZV62_003685 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 84..151
e-value: 1.4E-6
score: 28.1
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 53..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038510.1Lag0038510.1mRNA