Lag0038473 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038473
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CBL-interacting serine/threonine-protein kinase 6
Location	chr2: 18324839 .. 18325443 (-)
RNA-Seq Expression	Lag0038473
Synteny	Lag0038473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCAGCTAAAAACCAACTGCAAGATTCACCCCTTTCTTCGCGATTTCTCTCTCTCAGATCCATTGCACGTCGCTGTCACCGTTTGCAGTGTCTTTCCGTATGAATACCAGATCTGGAACGAGCCGCGTCTTTCCGGCGCCGACGGTGAGTGGGTATCGTCGATCTGTTCGTGGGCTTTGGTGAGTGGGTATCGTTGCGTTTTCCAGATCTCGTTTTCCATATTTGTTTGTGGGCTTTGGTGAGTGGGTATCGGTGATTGGGTTTACTTTCAGCAGTTGATATTTGCAATCGATTTCTGCCATAGCCGTGGAGTTTATCACCGCGATCTGAAACCGGAGAATCTCCTCCTCGACGAAGACGGTAAACTTAAGGTCACCGATTCGGCCTCACCGCCTTATCCGAGCACTTAAAACAAGACGGATTGCTGCACACAACTTGCGGAACTCTGGCATACGTAGAACCAGAGGTCATCAGAAAGAGAAGAAAGAAAGGAAGACGGAAGGGAAAAAAAAAAAAAAGTTTGTCGGCGGCGGCCGGCGCCGGCAACCGCCGTCAGCCGCCGCTGACCGGTGTTGAAGGAGGAGCAGCCGCTAGAGCTTAG

mRNA sequence

ATGTCGCAGCTAAAAACCAACTGCAAGATTCACCCCTTTCTTCGCGATTTCTCTCTCTCAGATCCATTGCACGTCGCTGTCACCGTTTGCAGTGTCTTTCCGTATGAATACCAGATCTGGAACGAGCCGCGTCTTTCCGGCGCCGACGGTGAGTGGGTATCGTCGATCTGTTCGTGGGCTTTGCAGTTGATATTTGCAATCGATTTCTGCCATAGCCGTGGAGTTTATCACCGCGATCTGAAACCGGAGAATCTCCTCCTCGACGAAGACGAACCAGAGGTCATCAGAAAGAGAAGAAAGAAAGGAAGACGGAAGGGAAAAAAAAAAAAAAGTTTGTCGGCGGCGGCCGGCGCCGGCAACCGCCGTCAGCCGCCGCTGACCGGTGTTGAAGGAGGAGCAGCCGCTAGAGCTTAG

Coding sequence (CDS)

ATGTCGCAGCTAAAAACCAACTGCAAGATTCACCCCTTTCTTCGCGATTTCTCTCTCTCAGATCCATTGCACGTCGCTGTCACCGTTTGCAGTGTCTTTCCGTATGAATACCAGATCTGGAACGAGCCGCGTCTTTCCGGCGCCGACGGTGAGTGGGTATCGTCGATCTGTTCGTGGGCTTTGCAGTTGATATTTGCAATCGATTTCTGCCATAGCCGTGGAGTTTATCACCGCGATCTGAAACCGGAGAATCTCCTCCTCGACGAAGACGAACCAGAGGTCATCAGAAAGAGAAGAAAGAAAGGAAGACGGAAGGGAAAAAAAAAAAAAAGTTTGTCGGCGGCGGCCGGCGCCGGCAACCGCCGTCAGCCGCCGCTGACCGGTGTTGAAGGAGGAGCAGCCGCTAGAGCTTAG

Protein sequence

MSQLKTNCKIHPFLRDFSLSDPLHVAVTVCSVFPYEYQIWNEPRLSGADGEWVSSICSWALQLIFAIDFCHSRGVYHRDLKPENLLLDEDEPEVIRKRRKKGRRKGKKKKSLSAAAGAGNRRQPPLTGVEGGAAARA

Homology

[Close]

BLAST of Lag0038473 vs. NCBI nr
Match: KAF5197887.1 (Non-specific serine/threonine protein kinase [Thalictrum thalictroides])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 1   MSQLKTNCKIHPFLRDFSLSDPLHVAVTVCSV-FPYEYQIWNEPRLSGADGEWVSSI-CS 60
           + Q+K    +   +R  ++ +   V  T   + F  EY    E     A G+    + C 
Sbjct: 75  IEQIKREISVMHLVRHPNVVELYEVMATKTKIYFAMEYVRGGELFNKVAKGKLKEDVACK 134

Query: 61  WALQLIFAIDFCHSRGVYHRDLKPENLLLDED 91
           +  QLI ++DFCHSRGVYHRDLKPENLLLDED
Sbjct: 135 YFQQLIESVDFCHSRGVYHRDLKPENLLLDED 166

[Close]

BLAST of Lag0038473 vs. NCBI nr
Match: KAG6739219.1 (hypothetical protein POTOM_056808 [Populus tomentosa])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 1   MSQLKTNCKIHPFLRDFSLSDPLHVAVTVCSV-FPYEYQIWNEPRLSGADGEWVSSIC-S 60
           M Q++T   +   +R  ++ +   V  T   + F  EY    E     A G     +   
Sbjct: 53  MEQIQTEISVMHLVRHPNIVELKEVMATKTKIFFIMEYVRGGELFAKVAKGRLKEEVARK 112

Query: 61  WALQLIFAIDFCHSRGVYHRDLKPENLLLDEDE 92
           +  QLI AID+CHSRGVYHRDLKPEN+LLDEDE
Sbjct: 113 YFQQLISAIDYCHSRGVYHRDLKPENMLLDEDE 145

[Close]

BLAST of Lag0038473 vs. NCBI nr
Match: ABJ91235.1 (CBL-interacting protein kinase 20 [Populus trichocarpa])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 1   MSQLKTNCKIHPFLRDFSLSDPLHVAVTVCSV-FPYEYQIWNEPRLSGADGEWVSSIC-S 60
           M Q++T   +   +R  ++ +   V  T   + F  EY    E     A G     +   
Sbjct: 53  MEQIQTEISVMHLVRHPNIVELKEVMATKTKIFFIMEYVRGGELFAKVAKGRLKEEVARK 112

Query: 61  WALQLIFAIDFCHSRGVYHRDLKPENLLLDEDE 92
           +  QLI AID+CHSRGVYHRDLKPEN+LLDEDE
Sbjct: 113 YFQQLISAIDYCHSRGVYHRDLKPENILLDEDE 145

[Close]

BLAST of Lag0038473 vs. NCBI nr
Match: XP_011016483.1 (PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Populus euphratica])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 1   MSQLKTNCKIHPFLRDFSLSDPLHVAVTVCSV-FPYEYQIWNEPRLSGADGEWVSSIC-S 60
           M Q++T   +   +R  ++ +   V  T   + F  EY    E     A G     +   
Sbjct: 53  MEQIQTEISVMHLVRHPNIVELKEVLATKTKIFFIMEYVRGGELFAKVAKGRLKEEVARK 112

Query: 61  WALQLIFAIDFCHSRGVYHRDLKPENLLLDEDE 92
           +  QLI AID+CHSRGVYHRDLKPEN+LLDEDE
Sbjct: 113 YFQQLISAIDYCHSRGVYHRDLKPENMLLDEDE 145

[Close]

BLAST of Lag0038473 vs. NCBI nr
Match: KAG6740284.1 (hypothetical protein POTOM_055727 [Populus tomentosa])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 1   MSQLKTNCKIHPFLRDFSLSDPLHVAVTVCSV-FPYEYQIWNEPRLSGADGEWVSSIC-S 60
           M Q++T   +   +R  ++ +   V  T   + F  EY    E     A G     +   
Sbjct: 53  MEQIQTEISVMHLVRHPNIVELKEVMATKTKIFFIMEYVRGGELFAKVAKGRLKEEVARK 112

Query: 61  WALQLIFAIDFCHSRGVYHRDLKPENLLLDEDE 92
           +  QLI AID+CHSRGVYHRDLKPEN+LLDEDE
Sbjct: 113 YFQQLISAIDYCHSRGVYHRDLKPENMLLDEDE 145

[Close]

BLAST of Lag0038473 vs. ExPASy Swiss-Prot
Match: O65554 (CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CIPK6 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 62  QLIFAIDFCHSRGVYHRDLKPENLLLDED 91
           QLI A+DFCHSRGVYHRDLKPENLLLDE+
Sbjct: 129 QLISAVDFCHSRGVYHRDLKPENLLLDEE 157

[Close]

BLAST of Lag0038473 vs. ExPASy Swiss-Prot
Match: Q10LQ2 (CBL-interacting protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK10 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 62  QLIFAIDFCHSRGVYHRDLKPENLLLDED 91
           QLI AIDFCHSRGVYHRDLKPENLLLDE+
Sbjct: 118 QLISAIDFCHSRGVYHRDLKPENLLLDEN 146

[Close]

BLAST of Lag0038473 vs. ExPASy Swiss-Prot
Match: Q2QYM3 (CBL-interacting protein kinase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK14 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 62  QLIFAIDFCHSRGVYHRDLKPENLLLDEDE 92
           QLI A+D+CHSRGVYHRDLKPENLLLDE+E
Sbjct: 118 QLISAVDYCHSRGVYHRDLKPENLLLDENE 147

[Close]

BLAST of Lag0038473 vs. ExPASy Swiss-Prot
Match: Q2RBF0 (CBL-interacting protein kinase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK15 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 62  QLIFAIDFCHSRGVYHRDLKPENLLLDEDE 92
           QLI A+D+CHSRGVYHRDLKPENLLLDE+E
Sbjct: 118 QLISAVDYCHSRGVYHRDLKPENLLLDENE 147

[Close]

BLAST of Lag0038473 vs. ExPASy Swiss-Prot
Match: Q7X996 (CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 62  QLIFAIDFCHSRGVYHRDLKPENLLLDED 91
           QLI A+DFCHSRGVYHRDLKPENLLLDE+
Sbjct: 118 QLICAVDFCHSRGVYHRDLKPENLLLDEN 146

The following BLAST results are available for this feature:

BLAST of Lag0038473 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5197887.1	3.8e-08	41.30	Non-specific serine/threonine protein kinase [Thalictrum thalictroides]	[more]
KAG6739219.1	3.8e-08	41.94	hypothetical protein POTOM_056808 [Populus tomentosa]	[more]
ABJ91235.1	3.8e-08	41.94	CBL-interacting protein kinase 20 [Populus trichocarpa]	[more]
XP_011016483.1	3.8e-08	41.94	PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Populus euph...	[more]
KAG6740284.1	3.8e-08	41.94	hypothetical protein POTOM_055727 [Populus tomentosa]	[more]

BLAST of Lag0038473 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65554	1.0e-08	89.66	CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana OX=370...	[more]
Q10LQ2	1.0e-08	93.10	CBL-interacting protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CI...	[more]
Q2QYM3	1.0e-08	86.67	CBL-interacting protein kinase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=CI...	[more]
Q2RBF0	1.0e-08	86.67	CBL-interacting protein kinase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=CI...	[more]
Q7X996	1.3e-08	89.66	CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CIP...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.510.10	Transferase(Phosphotransferase) domain 1	coord: 51..130 e-value: 2.4E-12 score: 49.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..137
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 57..91 e-value: 1.7E-9 score: 37.5
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 1..137 score: 10.690265
IPR008271	Serine/threonine-protein kinase, active site	PROSITE	PS00108	PROTEIN_KINASE_ST	coord: 75..87
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 55..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038473.1	Lag0038473.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity