Lag0038467 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038467
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 18154718 .. 18156290 (-)
RNA-Seq Expression	Lag0038467
Synteny	Lag0038467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCCTTCTTAAGCAAAAGAGCTTCACAGTTGAATGGTTGGAGCTCTAGTGTTATGGGTGTTGTTCGGCTTCTGGTAGTATACCTTAATTCTTGGGTTCTGCATCCGCTACACGTTGAGGACGAAGGACATTCACTAGAGTCACACACCTTAGCTGGGCGTCTATCGGAAGGGAGGTGTTGCTACTGTTGGTGTCAAAGCAAAGAAAATTTCCTTGCCGGAGTTGGGTTGTCGTGGGCTGCCGTCGGCTTAGACAATGGGAGAGAAAGATTTTTTTTTATATTCGATCGTTGCTGGTCATCAGAGAAAGGAGGAGGCGGCGGAGCGAAGGAGTTCGGTTATCGTGGGCTGCTGCAGACAGTGAGAAAGAATGGGGAGAGAATGGTGAGAGGGAAAGAGAAAGAAAGAGATAGAAAAGGGGAAGGAAAATGCGTGTGAGAGAGAGAAAGTGGGAGGAACAAGAAAAGGGGCACACGATTTTTTTTTTTCAAATCCCTTTTTTTGTGGACAAAACCATATACTATTTTTTTTTCACTTATTGCTTTCTTTCAACTTCCATCTCAACAACCTTTTCTTTTCTTTTCTTTTGATTTTTTTTCTCTTAATTACTTTTCAACTTTTTTGCCATATACTTTTTTTCTTTTGTTTTTTTTCTTTTTTTTTAATCTTTTTTCAACTTTTTCTTTCCTAATTTCTTTTTATTCTTCTTCTTTTTTCTTTACATTTTTTTTTACAACTAAGATATTTCTTTCAACCGCCAGATTTTGAAGGTGTAGCGGAACAAGGTCGTCAGCCGCTGACTTTGAAGGTGGAGCGGAACGAGGTCGTTAGCGGTCAACTTTGAAGATGGAGTGGAACAAGGTCGTCAATCGCCGTCGACTTTGAGGATAGAGCGGAACGAGGTCGTCAACCGCCACCGACTTTGAGGATGGAGCAGAACGAGACCGCCAACCGCCAACTTTGAAGATGAAGTTGTCATCAACCGCATCTTACCTTGGGAAGTGAACATCCCCTGATTCACGCGGAATGCAAGCTAATCACTTGGCCTCTTGCATCTTATCTCAGGCAGTGATCAACCCCTGATTCAAGTGGAATTCAGGCTGATCACTCGCCCTTCACATCTTGCCTCAGGCAGTGATCAACTCCTGATTCAGGCAGAATTCGGGATGATCACTTGCCTTCACATCTTGCCTCAGGCAGTGACCAACCCCTAATTCAGGCAGAATTCAGGATGATCACTCACCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCTGGCGGAATTCAGGATGATTACTTGCCTTACACATCTTGCCTCAAGCAGTGATCAACCCCTGATTCAGGTGGAATTCAAGATGATCTCTCGCCCTTCACATCTTGTCTCAGGCAGTGATCAACCCCTGATTCAGGCGAAATTCAGGCTGTTCACTCGCCCTTCACATCTTACCTCAGGTAGTGATCAACCTCTGATTCAAGCGGATTGCAGGCTCGTCACTTGCCCACTTGCACCGCCAACCTTTGAAGATGAAGCGAAGCCAAAGTTGTCGACCGTAAACTTTTGA

mRNA sequence

ATGGGGTCCTTCTTAAGCAAAAGAGCTTCACAGTTGAATGGTTGGAGCTCTAGTGTTATGGGTGTTGTTCGGCTTCTGGTAGTATACCTTAATTCTTGGGTTCTGCATCCGCTACACGTTGAGGACGAAGGACATTCACTAGAGTCACACACCTTAGCTGGGCGTCTATCGGAAGGGAGGTGTTGCTACTGTTGGTGTCAAAGCAAAGAAAATTTCCTTGCCGGAGTTGGGTTGTCGTGGGCTGCCGTCGGCTTAGACAATGGGAGAGAAAGATTTTTTTTTATATTCGATCGTTGCTGGTCATCAGAGAAAGGAGGAGGCGGCGGAGCGAAGGAGTTCGGTTATCGTGGGCTGCTGCAGACAGTGAGAAAGAATGGGGAGAGAATGGTGAGAGGGAAAGAGAAAGAAAGAGATAGAAAAGGGGAAGGAAAATGCGTGTGTAGCGGAACAAGGTCGTCAGCCGCTGACTTTGAAGGTGGAGCGGAACGAGGCAGAATTCGGGATGATCACTTGCCTTCACATCTTGCCTCAGGCAGTGACCAACCCCTAATTCAGGCAGAATTCAGGATGATCACTCACCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCTGGCGGAATTCAGGATGATTACTTGCCTTACACATCTTGCCTCAAGCAGTGATCAACCCCTGATTCAGGTGGAATTCAAGATGATCTCTCGCCCTTCACATCTTGTCTCAGGCAGTGATCAACCCCTGATTCAGGCGAAATTCAGGCTGTTCACTCGCCCTTCACATCTTACCTCAGGTAGTGATCAACCTCTGATTCAAGCGGATTGCAGGCTCGTCACTTGCCCACTTGCACCGCCAACCTTTGAAGATGAAGCGAAGCCAAAGTTGTCGACCGTAAACTTTTGA

Coding sequence (CDS)

ATGGGGTCCTTCTTAAGCAAAAGAGCTTCACAGTTGAATGGTTGGAGCTCTAGTGTTATGGGTGTTGTTCGGCTTCTGGTAGTATACCTTAATTCTTGGGTTCTGCATCCGCTACACGTTGAGGACGAAGGACATTCACTAGAGTCACACACCTTAGCTGGGCGTCTATCGGAAGGGAGGTGTTGCTACTGTTGGTGTCAAAGCAAAGAAAATTTCCTTGCCGGAGTTGGGTTGTCGTGGGCTGCCGTCGGCTTAGACAATGGGAGAGAAAGATTTTTTTTTATATTCGATCGTTGCTGGTCATCAGAGAAAGGAGGAGGCGGCGGAGCGAAGGAGTTCGGTTATCGTGGGCTGCTGCAGACAGTGAGAAAGAATGGGGAGAGAATGGTGAGAGGGAAAGAGAAAGAAAGAGATAGAAAAGGGGAAGGAAAATGCGTGTGTAGCGGAACAAGGTCGTCAGCCGCTGACTTTGAAGGTGGAGCGGAACGAGGCAGAATTCGGGATGATCACTTGCCTTCACATCTTGCCTCAGGCAGTGACCAACCCCTAATTCAGGCAGAATTCAGGATGATCACTCACCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCTGGCGGAATTCAGGATGATTACTTGCCTTACACATCTTGCCTCAAGCAGTGATCAACCCCTGATTCAGGTGGAATTCAAGATGATCTCTCGCCCTTCACATCTTGTCTCAGGCAGTGATCAACCCCTGATTCAGGCGAAATTCAGGCTGTTCACTCGCCCTTCACATCTTACCTCAGGTAGTGATCAACCTCTGATTCAAGCGGATTGCAGGCTCGTCACTTGCCCACTTGCACCGCCAACCTTTGAAGATGAAGCGAAGCCAAAGTTGTCGACCGTAAACTTTTGA

Protein sequence

MGSFLSKRASQLNGWSSSVMGVVRLLVVYLNSWVLHPLHVEDEGHSLESHTLAGRLSEGRCCYCWCQSKENFLAGVGLSWAAVGLDNGRERFFFIFDRCWSSEKGGGGGAKEFGYRGLLQTVRKNGERMVRGKEKERDRKGEGKCVCSGTRSSAADFEGGAERGRIRDDHLPSHLASGSDQPLIQAEFRMITHPSHLASGSDQPLILAEFRMITCLTHLASSSDQPLIQVEFKMISRPSHLVSGSDQPLIQAKFRLFTRPSHLTSGSDQPLIQADCRLVTCPLAPPTFEDEAKPKLSTVNF

Homology

[Close]

BLAST of Lag0038467 vs. NCBI nr
Match: CAE1322405.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-10
Identity = 44/102 (43.14%), Postives = 48/102 (47.06%), Query Frame = 0


Query: 171 LPSHLASGSDQPLIQAEFRMITHPSHLASGSDQPLILAEFRMITCLTHLASSSDQPLIQV 230
           LP+HL S S  P I         PSHL S SD P IL         THL SSSD P I  
Sbjct: 90  LPTHLLSLSVSPAILFRLTCYPLPSHLPSSSDSPAILFRLTCYPLPTHLLSSSDSPAIFF 149

Query: 231 EFKMISRPSHLVSGSDQPLIQAKFRLFTRPSHLTSGSDQPLI 273
                  PSHL+S S  P I  +   +  PSHL S SD P I
Sbjct: 150 RLTCYPLPSHLLSSSVSPAILFRLTCYLLPSHLLSYSDSPAI 191

[Close]

BLAST of Lag0038467 vs. NCBI nr
Match: CAE1178059.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 65.5 bits (158), Expect = 9.2e-07
Identity = 45/132 (34.09%), Postives = 52/132 (39.39%), Query Frame = 0


Query: 165 RIRDDHLPSHLASGSDQPLIQAEFRMITHPSHLASGSDQPLILAEFRMITCLTHLASSSD 224
           R+    LP+HL S S    I       + P HL S S  P IL          HL SSSD
Sbjct: 72  RLTCSPLPTHLLSSSSSSAILFRLTCYSVPPHLLSSSASPAILFFLTCYPLPFHLLSSSD 131

Query: 225 QPLIQVEFKMISRPSHLVSGSDQPLIQAKFRLFTRPSHLTSGSDQPLIQADCRLVTCPLA 284
            P I         P HL+S    P I  +   +  PSHL S SD P I    RL   PL 
Sbjct: 132 SPAILFLLTCYPLPPHLLSSFASPAILFRLTCYPLPSHLLSFSDSPAIL--FRLTCYPLP 191

Query: 285 PPTFEDEAKPKL 297
                  A P +
Sbjct: 192 SHLLFSSASPAI 201

[Close]

BLAST of Lag0038467 vs. NCBI nr
Match: CAE1298543.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-06
Identity = 45/127 (35.43%), Postives = 49/127 (38.58%), Query Frame = 0


Query: 171 LPSHLASGSDQPLIQAEFRMITHPSHLASGSDQPLILAEFRMITCLTHLASSSDQPLIQV 230
           LP HL S S  P I   F     P  L S S  P IL         THL SSS  P+I  
Sbjct: 443 LPPHLLSSSTSPAILFRFTCYPLPPQLLSSSASPAILFRLTCYPLPTHLLSSSASPVILF 502

Query: 231 EFKMISRPSHLVSGSDQPLIQAKFRLFTRPSHLTSGSDQPLIQADCRLVTC-PLAPPTFE 290
            F     P HL+S S    I       + P HL S S  P I       TC PL P    
Sbjct: 503 HFTCHPLPPHLLSSSTSYAILFHLTCNSLPPHLLSSSTSPAILFH---FTCHPLPPHLLS 562

Query: 291 DEAKPKL 297
             A P +
Sbjct: 563 PSASPAI 566

[Close]

BLAST of Lag0038467 vs. NCBI nr
Match: CAE1318706.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-05
Identity = 45/132 (34.09%), Postives = 55/132 (41.67%), Query Frame = 0


Query: 165 RIRDDHLPSHLASGSDQPLIQAEFRMITHPSHLASGSDQPLILAEFRMITCLTHLASSSD 224
           R+  + LPSHL S S  P +   F   T P+HL S S  P IL  F   +   HL   S 
Sbjct: 441 RLTCNTLPSHLLSSSASPALLFCFTCYTFPTHLLSSSASPDILFCFTCYSLPPHLLYLSA 500

Query: 225 QPLIQVEFKMISRPSHLVSGSDQPLIQAKFRLFTRPSHLTSGSDQPLIQADCRLVTCPLA 284
             +I         PSHL+S S    I      ++ PSHL   S  P I    RL   PL 
Sbjct: 501 SLVILFRLTYYHLPSHLLSSSASLAIPFPL-CYSLPSHLLYSSASPAI--PFRLTCYPLP 560

Query: 285 PPTFEDEAKPKL 297
           P      A P +
Sbjct: 561 PHLLSSSASPAI 569

[Close]

BLAST of Lag0038467 vs. NCBI nr
Match: CAE1328962.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-05
Identity = 39/118 (33.05%), Postives = 48/118 (40.68%), Query Frame = 0


Query: 171 LPSHLASGSDQPLIQAEFRMITHPSHLASGSDQPLILAEFRMITCLTHLASSSDQPLIQV 230
           LP HL S S  P I       + P HL S S  P IL        L+HL SSS  P+I  
Sbjct: 293 LPHHLLSSSASPAILFCRTCYSIPPHLLSTSASPAILLRITCYPLLSHLLSSSASPVILF 352

Query: 231 EFKMISRPSHLVSGSDQPLIQAKFRLFTRPSHLTSGSDQPLIQ--ADCRLVTCPLAPP 287
                  P H++S S  P +  +   +  P  L S S  P I   +   L   P  PP
Sbjct: 353 HIIYYPLPPHMLSSSASPALLFRITCYPLPPSLLSSSASPAIPSVSPAILFRLPCYPP 410

The following BLAST results are available for this feature:

BLAST of Lag0038467 vs. NCBI nr


Match Name	E-value	Identity	Description
CAE1322405.1	4.0e-10	43.14	unnamed protein product [Sepia pharaonis]	[more]
CAE1178059.1	9.2e-07	34.09	unnamed protein product [Sepia pharaonis]	[more]
CAE1298543.1	3.5e-06	35.43	unnamed protein product [Sepia pharaonis]	[more]
CAE1318706.1	1.7e-05	34.09	unnamed protein product [Sepia pharaonis]	[more]
CAE1328962.1	8.6e-05	33.05	unnamed protein product [Sepia pharaonis]	[more]

BLAST of Lag0038467 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038467 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038467 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038467.1	Lag0038467.1	mRNA