Lag0038456 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038456
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transmembrane protein
Location	chr2: 17846131 .. 17846568 (+)
RNA-Seq Expression	Lag0038456
Synteny	Lag0038456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGACCTCGAGCTCGGCTGCAAGTGAAGATTTGTTGTTGAAGATGGTCAAGGAAGACGACGAAGATGAGGTAGAGGATTTGGAGCTGATGGGGATTTACAATCTCGCAGGGTAGCCAAGATTTTTCTTCACGATCAAAGAGGAAATCAAGGAAGATTTGGAATTTGAAGATCATGCGAAATCTAGAGGCGATATAAGCGGAAAAGGATCGAGAAACAGAATCTTGAGTGATATAATCACAACGATTCAAACGTCGTTCTTCACTCCCATGGCTTCTCCTCTGAGCTCTTTAGACTCCTACAAGCTTCATGGATTCAATCCCCTCTTTGAATCATTGGCAGAATTGGAGCAAAATTTGAACAAGTTGAGATATTCTCCTCCTCCCAAGTTCAAATTTCTCAGAGATGTAGAGGAGAAATTGTACAAAGACTAA

mRNA sequence

ATGGATTGGACCTCGAGCTCGGCTGCAAGTGAAGATTTGTTGTTGAAGATGGTCAAGGAAGACGACGAAGATGAGGTAGAGGATTTGGAGCTGATGGGGATTTACAATCTCGCAGGAGGCGATATAAGCGGAAAAGGATCGAGAAACAGAATCTTGAGTGATATAATCACAACGATTCAAACGTCGTTCTTCACTCCCATGGCTTCTCCTCTGAGCTCTTTAGACTCCTACAAGCTTCATGGATTCAATCCCCTCTTTGAATCATTGGCAGAATTGGAGCAAAATTTGAACAAGTTGAGATATTCTCCTCCTCCCAAGTTCAAATTTCTCAGAGATGTAGAGGAGAAATTGTACAAAGACTAA

Coding sequence (CDS)

ATGGATTGGACCTCGAGCTCGGCTGCAAGTGAAGATTTGTTGTTGAAGATGGTCAAGGAAGACGACGAAGATGAGGTAGAGGATTTGGAGCTGATGGGGATTTACAATCTCGCAGGAGGCGATATAAGCGGAAAAGGATCGAGAAACAGAATCTTGAGTGATATAATCACAACGATTCAAACGTCGTTCTTCACTCCCATGGCTTCTCCTCTGAGCTCTTTAGACTCCTACAAGCTTCATGGATTCAATCCCCTCTTTGAATCATTGGCAGAATTGGAGCAAAATTTGAACAAGTTGAGATATTCTCCTCCTCCCAAGTTCAAATTTCTCAGAGATGTAGAGGAGAAATTGTACAAAGACTAA

Protein sequence

MDWTSSSAASEDLLLKMVKEDDEDEVEDLELMGIYNLAGGDISGKGSRNRILSDIITTIQTSFFTPMASPLSSLDSYKLHGFNPLFESLAELEQNLNKLRYSPPPKFKFLRDVEEKLYKD

Homology

[Close]

BLAST of Lag0038456 vs. NCBI nr
Match: XP_023523159.1 (uncharacterized protein LOC111787432 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-31
Identity = 87/144 (60.42%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 9   ASEDLLLKMVKEDDED---EVEDLELMGIYNLAG------------------------GD 68
           + EDLLLK   EDDE    E ED+ELM IYNLAG                        GD
Sbjct: 83  SGEDLLLKTTAEDDEHDEAEEEDVELMAIYNLAGQPRFLFTIKEETREDLESEDAKSRGD 142

Query: 69  ISGKGSRNRILSDIITTIQTSFFTPM------ASPLSSLDSYKLHGFNPLFESLAELEQN 120
            S KGSRNR LSDIIT I+T FFTP+      ASPL SLDSYKLH FNPLFES AELEQN
Sbjct: 143 RSRKGSRNRSLSDIITAIETPFFTPIASPPLKASPLCSLDSYKLHEFNPLFESSAELEQN 202

[Close]

BLAST of Lag0038456 vs. NCBI nr
Match: XP_022948541.1 (uncharacterized protein LOC111452187 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 6.2e-31
Identity = 86/144 (59.72%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 9   ASEDLLLKMVKEDDED---EVEDLELMGIYNLAG------------------------GD 68
           + EDLLLK   EDDE    E ED+ELM IYNLAG                        GD
Sbjct: 83  SGEDLLLKTAAEDDEHDEAEEEDVELMAIYNLAGQPRFLFTIKEETREDLESEDAKSRGD 142

Query: 69  ISGKGSRNRILSDIITTIQTSFFTPM------ASPLSSLDSYKLHGFNPLFESLAELEQN 120
            S KGSRNR LSDIIT I+T FFTP+      ASPL SLDSYKLH FNPLFES +ELEQN
Sbjct: 143 RSRKGSRNRSLSDIITAIETPFFTPIASPPLKASPLCSLDSYKLHEFNPLFESSSELEQN 202

[Close]

BLAST of Lag0038456 vs. NCBI nr
Match: KAG6607234.1 (hypothetical protein SDJN03_00576, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 6.2e-31
Identity = 86/144 (59.72%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 9   ASEDLLLKMVKEDDED---EVEDLELMGIYNLAG------------------------GD 68
           + EDLLLK   EDDE    E ED+ELM IYNLAG                        GD
Sbjct: 83  SGEDLLLKTAAEDDEHDEAEEEDVELMAIYNLAGQPRFLFTIKEETREDLESEDAKSRGD 142

Query: 69  ISGKGSRNRILSDIITTIQTSFFTPM------ASPLSSLDSYKLHGFNPLFESLAELEQN 120
            S KGSRNR LSDIIT I+T FFTP+      ASPL SLDSYKLH FNPLFES +ELEQN
Sbjct: 143 RSRKGSRNRSLSDIITAIETPFFTPIASPPLKASPLCSLDSYKLHEFNPLFESSSELEQN 202

[Close]

BLAST of Lag0038456 vs. NCBI nr
Match: XP_022997949.1 (uncharacterized protein LOC111492746 [Cucurbita maxima] >XP_022997950.1 uncharacterized protein LOC111492746 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 86/144 (59.72%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 9   ASEDLLLKMVKED---DEDEVEDLELMGIYNLAG------------------------GD 68
           + EDLLLK   ED   DE E ED+ELM IYNLAG                        GD
Sbjct: 83  SGEDLLLKTTAEDYEHDEAEDEDVELMAIYNLAGQPRFLFTIKEETREDLESEDAKSRGD 142

Query: 69  ISGKGSRNRILSDIITTIQTSFFTPM------ASPLSSLDSYKLHGFNPLFESLAELEQN 120
            S KGSRNR LSDIIT I+T FFTP+      ASPL SLDSYKLH FNPLFES A+LEQN
Sbjct: 143 RSRKGSRNRSLSDIITAIETPFFTPIASPPLKASPLCSLDSYKLHEFNPLFESSADLEQN 202

[Close]

BLAST of Lag0038456 vs. NCBI nr
Match: XP_038893882.1 (uncharacterized protein LOC120082683 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 85/142 (59.86%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 9   ASEDLLLKMV---KEDDEDEVE-DLELMGIYNLAG-------------------GDISGK 68
           + ED LLK     +EDDE+E E DLEL GIYNLAG                      S K
Sbjct: 77  SGEDSLLKTTATEEEDDEEETEDDLELQGIYNLAGQPRFLFTINEETKEDLESEDGKSRK 136

Query: 69  GSRNRILSDIITTIQTSFFTPM------ASPLSSLDS--YKLHGFNPLFESLAELEQNLN 120
           GSRNR LSDII  I T FFTPM      ASPLSSL+S  YKLHGFNPLFES  ELEQNL 
Sbjct: 137 GSRNRSLSDIIAAIDTPFFTPMASPPLKASPLSSLESYNYKLHGFNPLFESSDELEQNLK 196

The following BLAST results are available for this feature:

BLAST of Lag0038456 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523159.1	2.8e-31	60.42	uncharacterized protein LOC111787432 [Cucurbita pepo subsp. pepo]	[more]
XP_022948541.1	6.2e-31	59.72	uncharacterized protein LOC111452187 [Cucurbita moschata]	[more]
KAG6607234.1	6.2e-31	59.72	hypothetical protein SDJN03_00576, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022997949.1	1.1e-30	59.72	uncharacterized protein LOC111492746 [Cucurbita maxima] >XP_022997950.1 uncharac...	[more]
XP_038893882.1	1.9e-27	59.86	uncharacterized protein LOC120082683 [Benincasa hispida]	[more]

BLAST of Lag0038456 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34054:SF6	TRANSMEMBRANE PROTEIN	coord: 43..119
None	No IPR available	PANTHER	PTHR34054	EXPRESSED PROTEIN	coord: 43..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038456.1	Lag0038456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity