Lag0038445 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038445
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr2: 17648408 .. 17648842 (-)
RNA-Seq ExpressionLag0038445
SyntenyLag0038445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTCCTTTGGTAGATGGATTCAGGATAAAGGTCCACTTACTAATTTAATATCTGACTATTTCTCCACTCTTTTTGCCTCTTTGCTCCCAAGTGATGCAGATTTCGACGCTGTACTGGGGGCTGTACAGCCTCGTGTGGATGACAAAACGAATGAGGTCTTGTCTCGACCTTTTATAGTTGATGAGGTTATTTCAGCATTCCGGCAGATTCACCCTTCCAAATCACCGGGTCTAAATGGCTTATCAGGGGCTTTCTACAGAAGTCATTGGCATTTGATTGGGGATGATGTTATTCAGTGTTGTCTAAATGTTCTTAATAATCGGGTTTCTCTAGGGCCTATTAATGACGCATTGGTAGTCCTCATCCCAAAAGTGCACCAGCCCAATCGATTATCTGAATTCCGTCCAATATCCTTATGTAATTGTTAA

mRNA sequence

ATGGAAGATTCCTTTGGTAGATGGATTCAGGATAAAGGTCCACTTACTAATTTAATATCTGACTATTTCTCCACTCTTTTTGCCTCTTTGCTCCCAAGTGATGCAGATTTCGACGCTGTACTGGGGGCTGTACAGCCTCGTGTGGATGACAAAACGAATGAGGTCTTGTCTCGACCTTTTATAGTTGATGAGGTTATTTCAGCATTCCGGCAGATTCACCCTTCCAAATCACCGGGTCTAAATGGCTTATCAGGGGCTTTCTACAGAAGTCATTGGCATTTGATTGGGGATGATGTTATTCAGTGTTGTCTAAATGTTCTTAATAATCGGGTTTCTCTAGGGCCTATTAATGACGCATTGGTAGTCCTCATCCCAAAAGTGCACCAGCCCAATCGATTATCTGAATTCCGTCCAATATCCTTATGTAATTGTTAA

Coding sequence (CDS)

ATGGAAGATTCCTTTGGTAGATGGATTCAGGATAAAGGTCCACTTACTAATTTAATATCTGACTATTTCTCCACTCTTTTTGCCTCTTTGCTCCCAAGTGATGCAGATTTCGACGCTGTACTGGGGGCTGTACAGCCTCGTGTGGATGACAAAACGAATGAGGTCTTGTCTCGACCTTTTATAGTTGATGAGGTTATTTCAGCATTCCGGCAGATTCACCCTTCCAAATCACCGGGTCTAAATGGCTTATCAGGGGCTTTCTACAGAAGTCATTGGCATTTGATTGGGGATGATGTTATTCAGTGTTGTCTAAATGTTCTTAATAATCGGGTTTCTCTAGGGCCTATTAATGACGCATTGGTAGTCCTCATCCCAAAAGTGCACCAGCCCAATCGATTATCTGAATTCCGTCCAATATCCTTATGTAATTGTTAA

Protein sequence

MEDSFGRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPFIVDEVISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDALVVLIPKVHQPNRLSEFRPISLCNC
Homology
BLAST of Lag0038445 vs. NCBI nr
Match: XP_030487384.1 (uncharacterized protein LOC115704310 [Cannabis sativa])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-29
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 0

Query: 1   MEDSFGRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPF 60
           ++DS G W  DK  +  ++ DY++ LF S   ++  F  VLG +QP+V    NE L   F
Sbjct: 64  LQDSMGIWQDDKEVVCKIVEDYYTRLFTSSEINEDVFQEVLGVIQPKVTSAMNEDLVAEF 123

Query: 61  IVDEVISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDAL 120
             +EV+ A ++++P+K+PG +GL   FY+  W  + +DVI  CLNVLN    L  +ND +
Sbjct: 124 TGEEVVKAVKEMNPTKAPGADGLPALFYQKFWSKLKEDVIATCLNVLNQGADLKCLNDTM 183

Query: 121 VVLIPKVHQPNRLSEFRPISLCN 144
           V LIPKV +P R+ EFRPISLCN
Sbjct: 184 VALIPKVDKPQRIEEFRPISLCN 206

BLAST of Lag0038445 vs. NCBI nr
Match: XP_010684019.1 (PREDICTED: uncharacterized protein LOC104898622 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-28
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 3   DSFGRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPFIV 62
           D  G W  D   + N+ + YF ++F S  PSD+DFD VL  + P V    N+ L RPF  
Sbjct: 296 DEQGTWWDDADNIENIFTSYFDSIFTSSNPSDSDFDEVLQFIDPVVSAACNQQLLRPFTK 355

Query: 63  DEVISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDALVV 122
           DE+ +A +Q+HP K+PG +G+   FY+  WH+IGDDV     N+L+  +S   +N+  + 
Sbjct: 356 DEIYAAIQQMHPCKAPGHDGMHAIFYQRFWHIIGDDVTLFVSNILHGILSPSCVNNTNIA 415

Query: 123 LIPKVHQPNRLSEFRPISLCN 144
           LIPKV  P + ++FRPI+LCN
Sbjct: 416 LIPKVKNPTKAADFRPIALCN 436

BLAST of Lag0038445 vs. NCBI nr
Match: XP_012842345.1 (PREDICTED: uncharacterized protein LOC105962578 [Erythranthe guttata])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 60/138 (43.48%), Postives = 88/138 (63.77%), Query Frame = 0

Query: 6   GRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPFIVDEV 65
           G W  ++  +  +I++YF+ +F S  PS+ + D VL   +PRV  + N++LS PF  DEV
Sbjct: 3   GNWKVNEEDIEKIIAEYFAHIFKSTNPSEREIDEVLEHFEPRVTSEANQMLSMPFTADEV 62

Query: 66  ISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDALVVLIP 125
             A  Q+ P KSPG +GL   FY  +WH++G +VI C L  LNN+     +N   +VLIP
Sbjct: 63  TRAISQMAPLKSPGPDGLPVIFYTKYWHILGSNVISCVLEFLNNKRLPSALNFTYIVLIP 122

Query: 126 KVHQPNRLSEFRPISLCN 144
           KV +P +++E+RPISLCN
Sbjct: 123 KVKKPEKMTEYRPISLCN 140

BLAST of Lag0038445 vs. NCBI nr
Match: XP_010682933.1 (PREDICTED: uncharacterized protein LOC104897695 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-27
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = 0

Query: 1   MEDSFGRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPF 60
           + DS G W  D+  ++ +ISDYF+ +FAS  P  A+FD  L  + P+V    NEVL    
Sbjct: 337 LRDSAGVWKTDEKDVSAIISDYFTNIFASSSP--ANFDDALAGLSPKVPHTANEVLMAEP 396

Query: 61  IVDEVISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDAL 120
            VDEV  A  Q+HP+K+PG++G+   FY+  WH++GDD++    +  N RV +G +N   
Sbjct: 397 TVDEVRDALFQMHPNKAPGVDGMHALFYQKFWHIVGDDIVLFIRDWWNGRVQIGSLNRTC 456

Query: 121 VVLIPKVHQPNRLSEFRPISLC 143
           +VLIPK   P ++ +FRPISLC
Sbjct: 457 IVLIPKCSNPQQMGDFRPISLC 476

BLAST of Lag0038445 vs. NCBI nr
Match: XP_023874626.1 (uncharacterized protein LOC111987155 [Quercus suber])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-27
Identity = 63/138 (45.65%), Postives = 90/138 (65.22%), Query Frame = 0

Query: 6   GRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPFIVDEV 65
           G W++D+  +  +I DYFST+F S  PS   FD  L A+  RV ++ N  L   F  +EV
Sbjct: 184 GVWVEDQEGIDRIILDYFSTIFKSGNPS--SFDKSLSAISSRVSEEMNGDLLAVFKAEEV 243

Query: 66  ISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDALVVLIP 125
             A +Q+HP+K+PG +G+S  FY+ +W ++  DVI+C L VLN+ V    IN+  + LIP
Sbjct: 244 RVALQQMHPTKAPGPDGMSPIFYQKYWEIVDPDVIECVLAVLNSGVLPCGINETYICLIP 303

Query: 126 KVHQPNRLSEFRPISLCN 144
           KVH P +++EFRPISLCN
Sbjct: 304 KVHSPQKITEFRPISLCN 319

BLAST of Lag0038445 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.8e-07
Identity = 36/136 (26.47%), Postives = 60/136 (44.12%), Query Frame = 0

Query: 6   GRWIQDKGPLTNLISDYFSTLFASLLPSDADFDAVLGAVQPRVDDKTNEVLSRPFIVDEV 65
           G  ++D   + +    ++  LF S  P   D    L    P V ++  E L  P  +DE+
Sbjct: 396 GTPLEDPEAIRDRARSFYQNLF-SPDPISPDACEELWDGLPVVSERRKERLETPITLDEL 455

Query: 66  ISAFRQIHPSKSPGLNGLSGAFYRSHWHLIGDDVIQCCLNVLNNRVSLGPINDALVVLIP 125
             A R +  +KSPGL+GL+  F++  W  +G D  +                 A++ L+P
Sbjct: 456 SQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLP 515

Query: 126 KVHQPNRLSEFRPISL 142
           K      +  +RP+SL
Sbjct: 516 KKGDLRLIKNWRPVSL 530

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030487384.14.1e-2944.06uncharacterized protein LOC115704310 [Cannabis sativa][more]
XP_010684019.14.5e-2842.55PREDICTED: uncharacterized protein LOC104898622 [Beta vulgaris subsp. vulgaris][more]
XP_012842345.11.0e-2743.48PREDICTED: uncharacterized protein LOC105962578 [Erythranthe guttata][more]
XP_010682933.12.2e-2742.96PREDICTED: uncharacterized protein LOC104897695 [Beta vulgaris subsp. vulgaris][more]
XP_023874626.12.9e-2745.65uncharacterized protein LOC111987155 [Quercus suber][more]
Match NameE-valueIdentityDescription
P143817.8e-0726.47Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 2..143
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038445.1Lag0038445.1mRNA