Lag0038426 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038426
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr2: 17156253 .. 17156612 (-)
RNA-Seq Expression	Lag0038426
Synteny	Lag0038426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAGAGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTGCTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAAGCATGGGTAGCATTGACCAGTTGTTGTTAG

mRNA sequence

ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAGAGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTGCTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAAGCATGGGTAGCATTGACCAGTTGTTGTTAG

Coding sequence (CDS)

ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAGAGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTGCTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAAGCATGGGTAGCATTGACCAGTTGTTGTTAG

Protein sequence

MTSVNFSGNSALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWVALTSCC

Homology

[Close]

BLAST of Lag0038426 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 11  ALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKH 70
           A+ SG   +SP LNQLLNQITSIK+DRGNFLLW+NLALP L+SY+L  +LTG KPCPP H
Sbjct: 15  AVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTH 74

Query: 71  VRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWVAL 116
           +   V   +P++  G  SS++  +          +NP+YEAW+ +
Sbjct: 75  L---VPTDTPTNIEGSTSSQSSPT----------LNPTYEAWIVV 106

[Close]

BLAST of Lag0038426 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 17  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVA 76
           N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + 
Sbjct: 14  NFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIG 73

Query: 77  DPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV 114
           +          ++   +S ++AT T   +NP ++ W+
Sbjct: 74  ESQSEIDGTAEATDGASSRSTATKT---VNPKFDQWL 107

[Close]

BLAST of Lag0038426 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 17  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVA 76
           N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + 
Sbjct: 14  NFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIG 73

Query: 77  DPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV 114
           +          ++   +S ++AT T   +NP ++ W+
Sbjct: 74  ESQSEIDGTAEATDGASSRSTATKT---VNPKFDQWL 107

[Close]

BLAST of Lag0038426 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-14
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 13  SSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVR 72
           SS  N S+P LNQLLNQ++S+KLDR N+LLWK LALP ++SY+ EG+LTG  PCPPK + 
Sbjct: 10  SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFIT 69

Query: 73  VAVADPSPSSGAGGVSSRAEASE--ASATVTADDINPSYEAWV 114
              A+         +   AEA++  +S ++    +NP ++ W+
Sbjct: 70  NQTAESQSE-----IDGTAEATDGASSRSIATKTVNPKFDQWL 107

[Close]

BLAST of Lag0038426 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-14
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 17  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVA 76
           + ++PLLNQ+LNQ+T+IKLDRGN+LLWK LALP L+SY+L  HL G  PC PK + +   
Sbjct: 16  SFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQ 75

Query: 77  DPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV 114
                    G  S+  +S ++A VT   +NP YE W+
Sbjct: 76  PNESIVENAGEPSQETSSSSTAVVT---VNPKYERWI 109

The following BLAST results are available for this feature:

BLAST of Lag0038426 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	1.1e-16	51.43	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KAA0060627.1	1.6e-15	46.39	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	1.6e-15	46.39	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_016901223.1	1.8e-14	44.66	PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]	[more]
KAA0067279.1	4.0e-14	47.42	uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0038426 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038426.1	Lag0038426.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process