Lag0038408 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038408
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr2: 16862486 .. 16862899 (+)
RNA-Seq Expression	Lag0038408
Synteny	Lag0038408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGTGGAAGCCGTATCAAGTCAATGCATCTCAATACCTTCACATGTTCTTCCGAACTCCCATTGTTCTTTAATCGTCCCGATGTTGCCAGAATCACGTCGAATTCGACTCCAAATCCCATTCAGAACAAGCTTTTACCGGAAAATCACGAATTCTATTCGAAACTTCTGCAACTTTGCTTGCAACAGTGCAGGAGAATCAAAGCCCACAACCTATTCGACGAAAAGCCTAAGCCAGTTCTTCAAGCATTGAGAACCGCGAAGGTCATCCATTCGAAGAGTTTGAAGTTTGGAGTTGGGCTCAAAGGGTTGCTAGGCAATGCCATTGTTGACCTTTATGTCAAATGCGGCAATGTGGACTTCGCTCAGAAGGCATTTTCCTGGCTTGAGAAAAAGGATGTATTTGCCTGA

mRNA sequence

ATGTCATGTGGAAGCCGTATCAAGTCAATGCATCTCAATACCTTCACATGTTCTTCCGAACTCCCATTGTTCTTTAATCGTCCCGATGTTGCCAGAATCACGTCGAATTCGACTCCAAATCCCATTCAGAACAAGCTTTTACCGGAAAATCACGAATTCTATTCGAAACTTCTGCAACTTTGCTTGCAACAGTGCAGGAGAATCAAAGCCCACAACCTATTCGACGAAAAGCCTAAGCCAGTTCTTCAAGCATTGAGAACCGCGAAGGTCATCCATTCGAAGAGTTTGAAGTTTGGAGTTGGGCTCAAAGGGTTGCTAGGCAATGCCATTGTTGACCTTTATGTCAAATGCGGCAATGTGGACTTCGCTCAGAAGGCATTTTCCTGGCTTGAGAAAAAGGATGTATTTGCCTGA

Coding sequence (CDS)

ATGTCATGTGGAAGCCGTATCAAGTCAATGCATCTCAATACCTTCACATGTTCTTCCGAACTCCCATTGTTCTTTAATCGTCCCGATGTTGCCAGAATCACGTCGAATTCGACTCCAAATCCCATTCAGAACAAGCTTTTACCGGAAAATCACGAATTCTATTCGAAACTTCTGCAACTTTGCTTGCAACAGTGCAGGAGAATCAAAGCCCACAACCTATTCGACGAAAAGCCTAAGCCAGTTCTTCAAGCATTGAGAACCGCGAAGGTCATCCATTCGAAGAGTTTGAAGTTTGGAGTTGGGCTCAAAGGGTTGCTAGGCAATGCCATTGTTGACCTTTATGTCAAATGCGGCAATGTGGACTTCGCTCAGAAGGCATTTTCCTGGCTTGAGAAAAAGGATGTATTTGCCTGA

Protein sequence

MSCGSRIKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

Homology

[Close]

BLAST of Lag0038408 vs. NCBI nr
Match: XP_022974928.1 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 9.8e-49
Identity = 102/131 (77.86%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 7   IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCR 66
           +KSM LN+FTCSS LP F N  +VARI S STP+ I N+LL E+H  +SK LQ+CLQ CR
Sbjct: 1   MKSMRLNSFTCSSRLPSFLNPHNVARIASYSTPDCISNQLLSEDHNTHSKFLQVCLQHCR 60

Query: 67  RIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKA 126
           RIK HNLFDEKPKPVLQALRTAKVIHSKSLK GVGL GLLGNAIVDLYVKCGNVD+AQK 
Sbjct: 61  RIKPHNLFDEKPKPVLQALRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKV 120

Query: 127 FSWLEKKDVFA 138
           FS LEKKDVFA
Sbjct: 121 FSRLEKKDVFA 131

[Close]

BLAST of Lag0038408 vs. NCBI nr
Match: XP_023534935.1 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 99/131 (75.57%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 7   IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCR 66
           +KSM LN+FTCSS LP F N P VARI S STP+ I N++L E+H  +S+LLQLCL  CR
Sbjct: 1   MKSMRLNSFTCSSRLPSFLNPPHVARIASYSTPDYISNQVLTEDHNPHSELLQLCLHHCR 60

Query: 67  RIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKA 126
           RIKAHNLFDEKP+PVL+ALRT+KVIHSKSLK GVGL GLLGNAIVDLYVKCGNVD+AQK 
Sbjct: 61  RIKAHNLFDEKPEPVLRALRTSKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKL 120

Query: 127 FSWLEKKDVFA 138
           FS LEKKDVF+
Sbjct: 121 FSRLEKKDVFS 131

[Close]

BLAST of Lag0038408 vs. NCBI nr
Match: XP_022935750.1 (pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 3.2e-47
Identity = 100/131 (76.34%), Postives = 110/131 (83.97%), Query Frame = 0


Query: 7   IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCR 66
           +KSM LN+FTCSS LP F N P+VARI S ST + I N+ L E+H  +S+LLQLCL  CR
Sbjct: 1   MKSMRLNSFTCSSRLPSFLNPPNVARIASCSTSDCISNQFLYEDHNPHSELLQLCLHHCR 60

Query: 67  RIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKA 126
           RIKAHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLLGNAIVDLYVKCGNVD+AQK 
Sbjct: 61  RIKAHNLFDEKPEPVLQVLRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKV 120

Query: 127 FSWLEKKDVFA 138
           FS LEKKDVFA
Sbjct: 121 FSRLEKKDVFA 131

[Close]

BLAST of Lag0038408 vs. NCBI nr
Match: KAG6592177.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 99/131 (75.57%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 7   IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCR 66
           +KSM LN+FTCSS LP F N P+V RI S ST + I N+ L E+H  +S+LLQLCL  CR
Sbjct: 1   MKSMRLNSFTCSSRLPSFLNPPNVDRIASCSTSDCISNQFLYEDHNPHSELLQLCLHHCR 60

Query: 67  RIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKA 126
           RIKAHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLLGNAIVDLYVKCGNVD+AQK 
Sbjct: 61  RIKAHNLFDEKPEPVLQVLRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKV 120

Query: 127 FSWLEKKDVFA 138
           FS LEKKDVFA
Sbjct: 121 FSRLEKKDVFA 131

[Close]

BLAST of Lag0038408 vs. NCBI nr
Match: KAG7025038.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 99/128 (77.34%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 10  MHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIK 69
           M LN+FTCSS LP F N P+VARI S ST + I N+LL E+H  +S+LLQLCL  CRRIK
Sbjct: 1   MRLNSFTCSSRLPSFLNPPNVARIASCSTSDCISNQLLYEDHNPHSELLQLCLHHCRRIK 60

Query: 70  AHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSW 129
           AHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLLGNAIVDLYVKCGNVD+AQK FS 
Sbjct: 61  AHNLFDEKPEPVLQVLRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKVFSR 120

Query: 130 LEKKDVFA 138
           LEKKDVFA
Sbjct: 121 LEKKDVFA 128

[Close]

BLAST of Lag0038408 vs. ExPASy Swiss-Prot
Match: Q9SS83 (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.4e-19
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 42  IQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVG 101
           I   +LP + + + +LL++CL QC+  K+  +FDE P+ +  ALR  K +HSKSL  G+ 
Sbjct: 33  IYGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGID 92

Query: 102 LKGLLGNAIVDLYVKCGNVDFAQKAFSWLEK 133
            +G LGNAIVDLY KC  V +A+K F +LEK
Sbjct: 93  SEGRLGNAIVDLYAKCAQVSYAEKQFDFLEK 123

[Close]

BLAST of Lag0038408 vs. ExPASy Swiss-Prot
Match: Q9LW32 (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.1e-05
Identity = 21/52 (40.38%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 84  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV 136
           ALR  K IH + ++ G+    ++G +I+D+Y KCG V+ A+KAF  ++ K+V
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNV 353

[Close]

BLAST of Lag0038408 vs. ExPASy Swiss-Prot
Match: O65543 (Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E7 PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 85  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV 136
           L  A  +HS+ LK G     LLGNA++D+Y KCG++  A++ F  L +KD+
Sbjct: 380 LSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDL 430

[Close]

BLAST of Lag0038408 vs. ExPASy Swiss-Prot
Match: Q9M9E2 (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 84  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV 136
           AL   K IH+  L+ GVGL   L NA++D+YV+CG ++ A   F+  +KKDV
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFN-SQKKDV 563

[Close]

BLAST of Lag0038408 vs. ExPASy Swiss-Prot
Match: P0C898 (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-04
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 85  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA 138
           LR  K + + ++K   GL+  + N++VD+Y+KCG VD A+K F+ ++ KDV +
Sbjct: 329 LRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVIS 381

The following BLAST results are available for this feature:

BLAST of Lag0038408 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974928.1	9.8e-49	77.86	pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita ...	[more]
XP_023534935.1	1.4e-47	75.57	pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita ...	[more]
XP_022935750.1	3.2e-47	76.34	pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita ...	[more]
KAG6592177.1	1.6e-46	75.57	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7025038.1	1.6e-46	77.34	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Lag0038408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS83	6.4e-19	47.25	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop...	[more]
Q9LW32	4.1e-05	40.38	Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop...	[more]
O65543	1.5e-04	43.14	Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidop...	[more]
Q9M9E2	1.5e-04	46.15	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop...	[more]
P0C898	3.4e-04	39.62	Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis th...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038408.1	Lag0038408.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004185	serine-type carboxypeptidase activity