Lag0038382 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038382
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 16416969 .. 16417427 (-)
RNA-Seq ExpressionLag0038382
SyntenyLag0038382
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAACAGATGAAGATGATGCAAACGAAAAAGAAATATATAAGTCACCGTTTTTCAAGTCCTAAGGTTCATCCGAGCAAACTTACAACAATCTTCAAACTGTCTACCGCTGCCCAAACCAACAAATCTGATGGTGATTCTGAACCATCCCAATTCAAAATTTTGTCACCAACAACTGTTGCTCTATCACCCACACAATCTGCTCGAGTAAAAATGTTGAAATCAAGATTTGCTGGGACCATTTTGAAAGCTCAACGAGCACTTTTTCCCAATTCCGATATTGATTGCAATTTTGCTACTCCAAAGACATGCTCTATACAAGATCGAAGACGAGTTGCAAGAGAAGCTCTAGACAAGGTCAAGCAAACGACTGATTTGAACGCAAATCTTGATGCTATGAGAGAGTTTCAAAAATTAATTGGACAAGATGAAGAAGATTTAGAATATATACTTTGA

mRNA sequence

ATGATTCAACAGATGAAGATGATGCAAACGAAAAAGAAATATATAAGTCACCGTTTTTCAAGTCCTAAGGTTCATCCGAGCAAACTTACAACAATCTTCAAACTGTCTACCGCTGCCCAAACCAACAAATCTGATGGTGATTCTGAACCATCCCAATTCAAAATTTTGTCACCAACAACTGTTGCTCTATCACCCACACAATCTGCTCGAGTAAAAATGTTGAAATCAAGATTTGCTGGGACCATTTTGAAAGCTCAACGAGCACTTTTTCCCAATTCCGATATTGATTGCAATTTTGCTACTCCAAAGACATGCTCTATACAAGATCGAAGACGAGTTGCAAGAGAAGCTCTAGACAAGGTCAAGCAAACGACTGATTTGAACGCAAATCTTGATGCTATGAGAGAGTTTCAAAAATTAATTGGACAAGATGAAGAAGATTTAGAATATATACTTTGA

Coding sequence (CDS)

ATGATTCAACAGATGAAGATGATGCAAACGAAAAAGAAATATATAAGTCACCGTTTTTCAAGTCCTAAGGTTCATCCGAGCAAACTTACAACAATCTTCAAACTGTCTACCGCTGCCCAAACCAACAAATCTGATGGTGATTCTGAACCATCCCAATTCAAAATTTTGTCACCAACAACTGTTGCTCTATCACCCACACAATCTGCTCGAGTAAAAATGTTGAAATCAAGATTTGCTGGGACCATTTTGAAAGCTCAACGAGCACTTTTTCCCAATTCCGATATTGATTGCAATTTTGCTACTCCAAAGACATGCTCTATACAAGATCGAAGACGAGTTGCAAGAGAAGCTCTAGACAAGGTCAAGCAAACGACTGATTTGAACGCAAATCTTGATGCTATGAGAGAGTTTCAAAAATTAATTGGACAAGATGAAGAAGATTTAGAATATATACTTTGA

Protein sequence

MIQQMKMMQTKKKYISHRFSSPKVHPSKLTTIFKLSTAAQTNKSDGDSEPSQFKILSPTTVALSPTQSARVKMLKSRFAGTILKAQRALFPNSDIDCNFATPKTCSIQDRRRVAREALDKVKQTTDLNANLDAMREFQKLIGQDEEDLEYIL
Homology
BLAST of Lag0038382 vs. NCBI nr
Match: KAE8647905.1 (hypothetical protein Csa_000421, partial [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-20
Identity = 70/161 (43.48%), Postives = 98/161 (60.87%), Query Frame = 0

Query: 3   QQMKMMQTKKKYISHRFSSPKVHPSKLTTIFKLSTAAQTNKSDGDSEPSQFKILSP---- 62
           ++MKMMQTK++++ +    PKV  +K+TT  K     Q  +S  D E + FK  SP    
Sbjct: 4   KKMKMMQTKRRHVDYHVLKPKVLSTKVTTAMKPYNIYQRKESKSDRELANFKCPSPKKNN 63

Query: 63  ----------TTVALSPTQSARVKMLKSRFAGTILKAQRALFPNSDIDCN-------FAT 122
                     T V LSP ++ARV++LK++F  TILKAQ+ L  NS+ D N        AT
Sbjct: 64  IELLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKL-QNSNNDSNKYEYVVVGAT 123

Query: 123 PKTCSI-QDRRRVAREALDKVKQTTDLNANLDAMREFQKLI 142
           PKTCSI Q+++R +REALDK+    D N NLD+MREF+K++
Sbjct: 124 PKTCSILQEQKRASREALDKINPVFDFNENLDSMREFEKIL 163

BLAST of Lag0038382 vs. NCBI nr
Match: KGN61401.2 (hypothetical protein Csa_006690, partial [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = 0

Query: 3   QQMKMMQTKKKYISHRFSSPKVHPSKLTTIFKLSTAAQTNKSDGDSEPSQFKILSP---- 62
           ++MKMMQTK++Y+ +    PKV  +K+TT  K     Q  +S+ D E + FK  SP    
Sbjct: 4   KKMKMMQTKRRYVDYHVLKPKVLSTKVTTAMKPYNIYQRKESNSDRELANFKCPSPKKNN 63

Query: 63  ----------TTVALSPTQSARVKMLKSRFAGTILKAQRALFPNSDIDCN-------FAT 122
                     T V LSP ++ARV++LK++F  TILKAQ+ L  NS+ D N        AT
Sbjct: 64  IELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKL-QNSNNDSNKYEYVVVGAT 123

Query: 123 PKTCSI-QDRRRVAREALDKVKQTTDLNANLDAMREFQKLI 142
           PK CSI Q+++R +REALDK+    + N NLD+MREF+K++
Sbjct: 124 PKACSILQEQKRASREALDKINPVFNFNENLDSMREFEKIL 163

BLAST of Lag0038382 vs. NCBI nr
Match: TYK19957.1 (hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 70/160 (43.75%), Postives = 100/160 (62.50%), Query Frame = 0

Query: 5   MKMMQTKKKYISHRFSSPKVHPSKL-TTIFKLSTAA-QTNKSDGDSEPSQFK-------- 64
           M+MMQ K++Y++ RF   KV  +K+ TT+ +L TA  QT KS+ + E ++F+        
Sbjct: 1   MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60

Query: 65  --ILSP-----TTVALSPTQSARVKMLKSRFAGTILKAQRALFPNSDIDCNF------AT 124
              LSP     T + LSP Q+ARV+MLK +F  TILKAQ+ L   S+ D N         
Sbjct: 61  SPTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKL---SNKDSNIYKYVVVEA 120

Query: 125 PKTCSIQDRRRVAREALDKVKQTTDLNANLDAMREFQKLI 142
           PK CSIQ++RR +RE+LDK+K   D N NLD+MR+F++L+
Sbjct: 121 PKVCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELL 157

BLAST of Lag0038382 vs. NCBI nr
Match: KAA0064635.1 (hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 70/160 (43.75%), Postives = 100/160 (62.50%), Query Frame = 0

Query: 5   MKMMQTKKKYISHRFSSPKVHPSKL-TTIFKLSTAA-QTNKSDGDSEPSQFK-------- 64
           M+MMQ K++Y++ RF   KV  +K+ TT+ +L TA  QT KS+ + E ++F+        
Sbjct: 1   MRMMQAKRRYVNDRFPKRKVLSTKVTTTVGELYTAIHQTKKSNSNHELAKFESPSSKNNN 60

Query: 65  --ILSP-----TTVALSPTQSARVKMLKSRFAGTILKAQRALFPNSDIDCNF------AT 124
              LSP     T + LSP Q+ARV+MLK +F  TILKAQ+ L   S+ D N         
Sbjct: 61  STTLSPKKTKTTIIVLSPRQAARVEMLKEKFGSTILKAQQKL---SNKDSNIYKYVVVEA 120

Query: 125 PKTCSIQDRRRVAREALDKVKQTTDLNANLDAMREFQKLI 142
           PK CSIQ++RR +RE+LDK+K   D N NLD+MR+F++L+
Sbjct: 121 PKVCSIQEQRRASRESLDKIKPVFDFNENLDSMRDFEELL 157

BLAST of Lag0038382 vs. NCBI nr
Match: KAG6589050.1 (hypothetical protein SDJN03_17615, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-16
Identity = 68/180 (37.78%), Postives = 97/180 (53.89%), Query Frame = 0

Query: 5   MKMMQTKKKYISHRFSSPKVHPSKLTTIFKLSTAAQTNKSDGDSEPSQFKI--LSPTTVA 64
           M+MMQTK++Y +   S+  V  S +TT  + S A +TN S+GDS+PS FK   +  T   
Sbjct: 1   MRMMQTKRRYHTDDSSNRLVMSSNVTTFLRPSIADRTNISNGDSKPSLFKTPPIRTTAQV 60

Query: 65  LSPTQSARVKMLKSRFAGTILKAQRAL---------------------------FPN--- 124
            SPT++ARV+MLK++F+ TI KAQ+AL                            PN   
Sbjct: 61  SSPTKTARVEMLKNKFSNTISKAQQALQSKHKIARKVAVPKKLPEQKRAAPNVVVPNVWS 120

Query: 125 -----------SDIDCNFATPKTCSIQDRRRVAREALDKVKQTTDLNANLDAMREFQKLI 142
                      S I+   A+PK  S++++RR +REALD VK T + N NLD M+EF+ L+
Sbjct: 121 TKQKRAARKAFSTIEQKQASPKEYSVREQRRASREALDAVKPTCNFNENLDVMKEFENLL 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647905.14.8e-2043.48hypothetical protein Csa_000421, partial [Cucumis sativus][more]
KGN61401.21.1e-1942.86hypothetical protein Csa_006690, partial [Cucumis sativus][more]
TYK19957.11.2e-1843.75hypothetical protein E5676_scaffold134G00700 [Cucumis melo var. makuwa][more]
KAA0064635.11.2e-1843.75hypothetical protein E6C27_scaffold255G003590 [Cucumis melo var. makuwa][more]
KAG6589050.14.2e-1637.78hypothetical protein SDJN03_17615, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038382.1Lag0038382.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane