Lag0038376 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038376
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PsbP domain-containing protein
Location	chr2: 16186551 .. 16189070 (+)
RNA-Seq Expression	Lag0038376
Synteny	Lag0038376

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCACATTGTTCACGAGTTGCAGATTCTCCTGCAACTTTCACCAGCCAAAGCTTCCTTCTCACATTCTCCATCCTCAATCTTTTCTCGAAAAGGGGGTTTCGGTCGTCGATGGGGAAAACGAGAAGCTGTCTGCGATTCTGAATCGGAGATCGGTTTTGGTATCGGGGGTTTCCTTGGTTTCTTCTGCGGCTTTGGGGCTGCAGAAGGAGTGTTCGGCTGCGGTCAAGCAAGGTCTTCTAGCGGGGAGGATTCCTGGGTTGTCTGAACCTGATGAACAGGGTTGGTTTTTCTTAACTCTCAACTCCGGAAAATTATATCTAAATATCCCTACTGTGGTTGCCATTTCTAGTTGAGATGTGTGATTTGTGTATCTGCTTGAATTGATCGAATCTTCTCCGAGCTGCATATTGTTGGTTAAAAAGCACTCTTGGTCACTATAATTTAGGCTTTGAACTTTGATATGTTGCAATTTAGTGAATGAGCTTTATTATGTAGTGATTTAGTCCCTATAATTAAAAATTTTGGTTTCTATAGTAAAAAAATCTCACTATGTTGTGATGGGATTTTTTTTTTTTTTTTTTTTTTTTGTGTGTATGTACATGGATTAATTTCCAAGAACCATTTGTTTTTTTATATTAGAAGATCAAATACTTCAACAGTTCGACTACATGGTATTTTATATGGTGGAGACTTAATTGTTACAAATTTTAAACTAAATTGATGGACTCGATTTTAACATATTAAAGTTCAGGGACATGGACTAAATCATTATTTTAGTGGAAGTATAGGGACCACGTGTGTTTTCTAACCCAAATTGTTGAAGTCAATTGTGAAAACTTGAGAGATGTGAGGCCTTATTTATCTTCTCTTTCTGTACCATATACTTGATTTGATGAATGTGATTTAGAATATGGTGAAGAATTTTCTTTTTTCTTTGGGTGATGTAGCTTTTTAATTCTAACGTTTTTGTTAATGAACTTTCAATTGTTTTATTTTAGTATCTCTCAAGAGAAAAAACAGGGCTGATCATGCCATCTTTTCCATATCAAGTTGCATTGCATTCCTGTTATGTTTATGCAGGATCTCTTGTGCTGAGCATAGAAAATATTTTCCTTGATGAATCAAAATCTGTCCAGAAAATTTCATTCTTACCATTGCATGCTTTGAAACTGCTTTCCCTTTTCATCTCAAGCTTAGCATATCTGGTTTCTTGTTTGCTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGGGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGATTGGGAAGAGGTACATGCTGTTTGACATTGCCCTATTGACCTGATGCTGATGCAAAACTACAAAAGAAATAACTGACTTCTACTTCGATCGGCTTCTTCATTAGATGAAAAACTTCTGAAATTAGATCAACCTTTAAACTTATAAGATATTAGTATGGCTTGTTAGGCTGGTCCTTTGGGTGGGTTTGTAGCCTAGTTCGTGGAATAAAGCCTCCAAGTCAAAAGATGAATATATAAAAAGAAAATTGAAGATGACCATCTAACTAGGATTTTGAAATCCTATGGTTTTTTGAAAATGAGATGTTGTAAGGTTAGTTGTTCTATGAGAATAGCTGAAAGAGAATTAACGGTATCCTTTGGAATTTGCATTTGGGGCACATAATGTTGCTAGTTGATTAGTGGGGTGTGGTCGGTATATATAAACATGGCAAGATCCATGGATATCTATTCCCAATTTATTTATCTGCTTGGAATATAAAATTTTCATGCTAATTAGGTACCTCTATCTATGAAAGTTAGTTTCATGTTCATCTTGATTAAAGCATACTTGATACAATGTGCATTTTTGTTACAGGTTCCTGTATCAATTGCTGATCTTGGTGGGACTGAGATTGATCTCAGATTTGGAAGCTCAAAGGAAGGTCGACTGTTTGTTATCGTTGCGCCTGTTCGTCGATTCTCCGATGGTGCATTTCCCCGAAATTTTATGCTTCTTGTTCATTTTTCCATTTTAAAGGAACTATATTGTACTCACTCTTCTGTGACTAACTGATGTTTTTATTGTCACTGTCCTGTAAAGTAATCGGCGAAGATGCAACTATTGAAATGGTTGGGCCTCCAGAGAAAGTAATCAGCGCATTCGGACCGGAAGTGATCGGTGAAAATGTAGAAGGAAAGGTGATCGACATGAGCGTGGCAGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTAATCACGGCGACAGCGGCGGGAAATCGTCTCTATCTATTCAATGTAACAGCAAACGGTAAGTTGATATGATGTGGTTTACATTAGAAAAGAAATCAATTGTTTTCCATTAGAACTAAAAGAAGCATTTGTTTTCTCTTGGGTTCTTACAGGCCTACAATGGAAGAGACACTACGGCGACTTGAAAAGGATAGCAAATTCTTTTCGCGTCGTATGA

mRNA sequence

ATGGGAACCACATTGTTCACGAGTTGCAGATTCTCCTGCAACTTTCACCAGCCAAAGCTTCCTTCTCACATTCTCCATCCTCAATCTTTTCTCGAAAAGGGGGTTTCGGTCGTCGATGGGGAAAACGAGAAGCTGTCTGCGATTCTGAATCGGAGATCGGTTTTGGTATCGGGGGTTTCCTTGGTTTCTTCTGCGGCTTTGGGGCTGCAGAAGGAGTGTTCGGCTGCGGTCAAGCAAGGTCTTCTAGCGGGGAGGATTCCTGGGTTGTCTGAACCTGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGGGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGATTGGGAAGAGGTTCCTGTATCAATTGCTGATCTTGGTGGGACTGAGATTGATCTCAGATTTGGAAGCTCAAAGGAAGGTCGACTGTTTGTTATCGTTGCGCCTGTTCGTCGATTCTCCGATGTAATCGGCGAAGATGCAACTATTGAAATGGTTGGGCCTCCAGAGAAAGTAATCAGCGCATTCGGACCGGAAGTGATCGGTGAAAATGTAGAAGGAAAGGTGATCGACATGAGCGTGGCAGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTAATCACGGCGACAGCGGCGGGAAATCGTCTCTATCTATTCAATGTAACAGCAAACGGCCTACAATGGAAGAGACACTACGGCGACTTGAAAAGGATAGCAAATTCTTTTCGCGTCGTATGA

Coding sequence (CDS)

ATGGGAACCACATTGTTCACGAGTTGCAGATTCTCCTGCAACTTTCACCAGCCAAAGCTTCCTTCTCACATTCTCCATCCTCAATCTTTTCTCGAAAAGGGGGTTTCGGTCGTCGATGGGGAAAACGAGAAGCTGTCTGCGATTCTGAATCGGAGATCGGTTTTGGTATCGGGGGTTTCCTTGGTTTCTTCTGCGGCTTTGGGGCTGCAGAAGGAGTGTTCGGCTGCGGTCAAGCAAGGTCTTCTAGCGGGGAGGATTCCTGGGTTGTCTGAACCTGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGGGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGATTGGGAAGAGGTTCCTGTATCAATTGCTGATCTTGGTGGGACTGAGATTGATCTCAGATTTGGAAGCTCAAAGGAAGGTCGACTGTTTGTTATCGTTGCGCCTGTTCGTCGATTCTCCGATGTAATCGGCGAAGATGCAACTATTGAAATGGTTGGGCCTCCAGAGAAAGTAATCAGCGCATTCGGACCGGAAGTGATCGGTGAAAATGTAGAAGGAAAGGTGATCGACATGAGCGTGGCAGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTAATCACGGCGACAGCGGCGGGAAATCGTCTCTATCTATTCAATGTAACAGCAAACGGCCTACAATGGAAGAGACACTACGGCGACTTGAAAAGGATAGCAAATTCTTTTCGCGTCGTATGA

Protein sequence

MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVSLVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGLQWKRHYGDLKRIANSFRVV

Homology

[Close]

BLAST of Lag0038376 vs. NCBI nr
Match: XP_022154428.1 (psbP domain-containing protein 4, chloroplastic [Momordica charantia])

HSP 1 Score: 472.2 bits (1214), Expect = 2.8e-129
Identity = 232/264 (87.88%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MGT+LFTS RFSCNFH PKLPS ILHPQS     +SV DGEN++    LNRRS+L SG+S
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQS-----ISVADGENQRPLGDLNRRSILASGIS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           L+S+A LGL   C AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
            FSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP
Sbjct: 121 VFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVI+AFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV
Sbjct: 181 PEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           TANGLQWKRHYGDLKRIA+SFRVV
Sbjct: 241 TANGLQWKRHYGDLKRIADSFRVV 259

[Close]

BLAST of Lag0038376 vs. NCBI nr
Match: XP_038896887.1 (psbP domain-containing protein 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 462.6 bits (1189), Expect = 2.3e-126
Identity = 234/267 (87.64%), Postives = 241/267 (90.26%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDG---ENEKLSAILNRRSVLVS 60
           MGTTLFT   F    HQP LPS +LHP SFL K VS V G   EN  LS  LNRR VLVS
Sbjct: 1   MGTTLFTINPFFSFCHQPNLPSPLLHPNSFLPKPVSAVHGGQQENPNLSPTLNRRWVLVS 60

Query: 61  GVSLVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSL+SSAALGL K+C AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLPKDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240
           VGPPEKVI+AFGPEVIGENVEGKVI MSVAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIANSFRVV 265
           F+VTANGLQWKRHY DLKRIA+SFRVV
Sbjct: 241 FSVTANGLQWKRHYSDLKRIADSFRVV 267

[Close]

BLAST of Lag0038376 vs. NCBI nr
Match: XP_023534875.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.2 bits (1175), Expect = 9.5e-125
Identity = 228/264 (86.36%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MG+T+F S  FSCNFHQ K PSHI      L+KGV  V GE E  S I+NRRSVL+SGVS
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHI------LQKGVPGVGGEKENRSPIVNRRSVLLSGVS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           LVSSA LGLQ EC AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
           AFSVPQDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGP
Sbjct: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVISAFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+V
Sbjct: 181 PEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           T NGLQWKRHY DLKRIA+SFRVV
Sbjct: 241 TGNGLQWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of Lag0038376 vs. NCBI nr
Match: XP_022936523.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035.1 PsbP domain-containing protein 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 227/264 (85.98%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MG+T+F S  FSCNFHQ K PSHI      L+KGV  V GE +  S ILNRRSVL+SGVS
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHI------LQKGVPAVGGEKDNRSPILNRRSVLLSGVS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           LVSSA LGLQ EC AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
           AFSVPQDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGP
Sbjct: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVISAFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+V
Sbjct: 181 PEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           T NGLQWKRH+ DLKRIA+SFRVV
Sbjct: 241 TGNGLQWKRHFSDLKRIADSFRVV 258

[Close]

BLAST of Lag0038376 vs. NCBI nr
Match: KAG6592174.1 (PsbP domain-containing protein 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 227/264 (85.98%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MG+T+F +  FSCNFHQ K PSHI      L+KGV  V GE E  S ILNRRSVL+SGVS
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSHI------LQKGVPAVGGEKENRSPILNRRSVLLSGVS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           LVSSA LGLQ EC AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
           AFSVPQDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGP
Sbjct: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVISAFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+V
Sbjct: 181 PEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           T NGLQWKRH+ DLKRIA+SFRVV
Sbjct: 241 TGNGLQWKRHFSDLKRIADSFRVV 258

[Close]

BLAST of Lag0038376 vs. ExPASy Swiss-Prot
Match: O49292 (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2)

HSP 1 Score: 355.5 bits (911), Expect = 5.1e-97
Identity = 173/224 (77.23%), Postives = 194/224 (86.61%), Query Frame = 0


Query: 41  ENEKLSAILNRRSVLVSGVSLVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTY 100
           E+E  + +L+RRSV+ SG+ + S+ AL   +E  A VKQGLLAGR+PGLSEPDE+GWRTY
Sbjct: 38  EDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTY 97

Query: 101 RRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVA 160
           RRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLGGTEIDLRF S KEGRL VIVA
Sbjct: 98  RRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVA 157

Query: 161 PVRRFSDVIGEDATIEMVGPPEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELE 220
           PV RF+D +G+D  IE +G P KVI+AFGPEVIGENVEGKV+  +VAEH GR YYQFELE
Sbjct: 158 PVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELE 217

Query: 221 PPHVLITATAAGNRLYLFNVTANGLQWKRHYGDLKRIANSFRVV 265
           PPHVLITATAAGNRLYLF+VT NGLQWKRHY DLKRIA+SFR+V
Sbjct: 218 PPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

[Close]

BLAST of Lag0038376 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-15
Identity = 50/160 (31.25%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 119 PYAFSVPQDWEEVPVSIADLGG--------TEIDLRFGSSKEGRLFVIVAPVRRFSDVIG 178
           PY F +P +W+++ ++    G           I+++F + K+G++ V+ +P+ R ++   
Sbjct: 105 PYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--K 164

Query: 179 EDATIEMVGPPEKVISAFGPEVIGENVEG-KVIDMSVAEHSGRTYYQFELEPP------H 238
            +ATIE +G PEKVI++ GP V G + +  +++  S+ +   +TYY++ LE P      H
Sbjct: 165 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 224

Query: 239 VLITATAAGNRLYLFNVTANGLQWKRHYGDLKRIANSFRV 264
            L  ATA G+ + LF V+A   QW+     L+ I +SF++
Sbjct: 225 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Lag0038376 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.7e-05
Identity = 40/153 (26.14%), Postives = 63/153 (41.18%), Query Frame = 0


Query: 120 YAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSD--VIGEDATIEM 179
           YAF  P  W+EV +              G  K  +   ++ P+   S   V     TI+ 
Sbjct: 91  YAFLYPFGWQEVVIE-------------GQDKVYK--DVIEPLESVSVNLVPTSKQTIKE 150

Query: 180 VGPPEKVISAFGPEVIG-ENVEGKVIDMSVAEHSGRTYYQFELE------PPHVLITATA 239
            GPP+++      +V+   N +  +ID S  +  G+TYYQFE          H L T T 
Sbjct: 151 FGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITV 210

Query: 240 AGNRLYLFNVTANGLQWKRHYGDLKRIANSFRV 264
                Y     AN  +W++    L  + +SF++
Sbjct: 211 FNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228

[Close]

BLAST of Lag0038376 vs. ExPASy TrEMBL
Match: A0A6J1DKA3 (psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021699 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.4e-129
Identity = 232/264 (87.88%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MGT+LFTS RFSCNFH PKLPS ILHPQS     +SV DGEN++    LNRRS+L SG+S
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQS-----ISVADGENQRPLGDLNRRSILASGIS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           L+S+A LGL   C AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
            FSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP
Sbjct: 121 VFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVI+AFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV
Sbjct: 181 PEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           TANGLQWKRHYGDLKRIA+SFRVV
Sbjct: 241 TANGLQWKRHYGDLKRIADSFRVV 259

[Close]

BLAST of Lag0038376 vs. ExPASy TrEMBL
Match: A0A6J1FDH1 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443110 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 6.0e-125
Identity = 227/264 (85.98%), Postives = 240/264 (90.91%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MG+T+F S  FSCNFHQ K PSHI      L+KGV  V GE +  S ILNRRSVL+SGVS
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHI------LQKGVPAVGGEKDNRSPILNRRSVLLSGVS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           LVSSA LGLQ EC AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
           AFSVPQDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGP
Sbjct: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVISAFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+V
Sbjct: 181 PEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           T NGLQWKRH+ DLKRIA+SFRVV
Sbjct: 241 TGNGLQWKRHFSDLKRIADSFRVV 258

[Close]

BLAST of Lag0038376 vs. ExPASy TrEMBL
Match: A0A6J1IFH3 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473925 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 227/264 (85.98%), Postives = 239/264 (90.53%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDGENEKLSAILNRRSVLVSGVS 60
           MG+T+F +  FSCNFHQ K PS I      L+KGV  V GE E  S ILNRRSVL+SGVS
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQI------LQKGVPAVGGEKENRSPILNRRSVLLSGVS 60

Query: 61  LVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120
           LVSSA LGLQ EC AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY
Sbjct: 61  LVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY 120

Query: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGP 180
           AFSVPQDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGP
Sbjct: 121 AFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGP 180

Query: 181 PEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNV 240
           PEKVISAFGPEVIGENVEGKV++MSVAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+V
Sbjct: 181 PEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSV 240

Query: 241 TANGLQWKRHYGDLKRIANSFRVV 265
           T NGLQWKRHY DLKRIA+SFRVV
Sbjct: 241 TGNGLQWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of Lag0038376 vs. ExPASy TrEMBL
Match: A0A0A0K501 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.4e-121
Identity = 225/267 (84.27%), Postives = 235/267 (88.01%), Query Frame = 0


Query: 1   MGTTLFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVVDG---ENEKLSAILNRRSVLVS 60
           MGTTLF +  FS  FH   LPS  L P  FL K VS V G   +N   S  LNRR  LVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GVSLVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           GVSL+SSAALGLQ +C AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGS KEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240
           VGPPEKVI+AFGPEVIGENVEGKVI MSVAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIANSFRVV 265
           FNVTANGLQWKRHY DLKRIA+SFR+V
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of Lag0038376 vs. ExPASy TrEMBL
Match: A0A5A7T2U1 (PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00200 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.3e-121
Identity = 228/268 (85.07%), Postives = 237/268 (88.43%), Query Frame = 0


Query: 1   MGTT-LFTSCRFSCNFHQPKLPSHILHPQSFLEKGVSVV---DGENEKLSAILNRRSVLV 60
           MGTT LF +  FS  FHQ  LPS +LHP  FL K VS +     +N   S  L RR VLV
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGVSLVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SGVSL+SSAALGLQ EC AAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELEPPHVLITATAAGNRLY 240
           MVGPPEKVI+AFGPEVIGENVEGKVI MSVAE+SGRTYYQFELEPPHV+ITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRHYGDLKRIANSFRVV 265
           LFNVTANGLQWKRHY DLKRIA+SFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of Lag0038376 vs. TAIR 10
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 355.5 bits (911), Expect = 3.6e-98
Identity = 173/224 (77.23%), Postives = 194/224 (86.61%), Query Frame = 0


Query: 41  ENEKLSAILNRRSVLVSGVSLVSSAALGLQKECSAAVKQGLLAGRIPGLSEPDEQGWRTY 100
           E+E  + +L+RRSV+ SG+ + S+ AL   +E  A VKQGLLAGR+PGLSEPDE+GWRTY
Sbjct: 38  EDEWCARVLSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTY 97

Query: 101 RRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVA 160
           RRPDEKSGGHGVGWSPIIPYAFSVPQDW EVPVSIADLGGTEIDLRF S KEGRL VIVA
Sbjct: 98  RRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVA 157

Query: 161 PVRRFSDVIGEDATIEMVGPPEKVISAFGPEVIGENVEGKVIDMSVAEHSGRTYYQFELE 220
           PV RF+D +G+D  IE +G P KVI+AFGPEVIGENVEGKV+  +VAEH GR YYQFELE
Sbjct: 158 PVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELE 217

Query: 221 PPHVLITATAAGNRLYLFNVTANGLQWKRHYGDLKRIANSFRVV 265
           PPHVLITATAAGNRLYLF+VT NGLQWKRHY DLKRIA+SFR+V
Sbjct: 218 PPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

[Close]

BLAST of Lag0038376 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-16
Identity = 50/160 (31.25%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 119 PYAFSVPQDWEEVPVSIADLGG--------TEIDLRFGSSKEGRLFVIVAPVRRFSDVIG 178
           PY F +P +W+++ ++    G           I+++F + K+G++ V+ +P+ R ++   
Sbjct: 105 PYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--K 164

Query: 179 EDATIEMVGPPEKVISAFGPEVIGENVEG-KVIDMSVAEHSGRTYYQFELEPP------H 238
            +ATIE +G PEKVI++ GP V G + +  +++  S+ +   +TYY++ LE P      H
Sbjct: 165 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 224

Query: 239 VLITATAAGNRLYLFNVTANGLQWKRHYGDLKRIANSFRV 264
            L  ATA G+ + LF V+A   QW+     L+ I +SF++
Sbjct: 225 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Lag0038376 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 )

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-06
Identity = 40/153 (26.14%), Postives = 63/153 (41.18%), Query Frame = 0


Query: 120 YAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSD--VIGEDATIEM 179
           YAF  P  W+EV +              G  K  +   ++ P+   S   V     TI+ 
Sbjct: 91  YAFLYPFGWQEVVIE-------------GQDKVYK--DVIEPLESVSVNLVPTSKQTIKE 150

Query: 180 VGPPEKVISAFGPEVIG-ENVEGKVIDMSVAEHSGRTYYQFELE------PPHVLITATA 239
            GPP+++      +V+   N +  +ID S  +  G+TYYQFE          H L T T 
Sbjct: 151 FGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITV 210

Query: 240 AGNRLYLFNVTANGLQWKRHYGDLKRIANSFRV 264
                Y     AN  +W++    L  + +SF++
Sbjct: 211 FNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228

The following BLAST results are available for this feature:

BLAST of Lag0038376 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154428.1	2.8e-129	87.88	psbP domain-containing protein 4, chloroplastic [Momordica charantia]	[more]
XP_038896887.1	2.3e-126	87.64	psbP domain-containing protein 4, chloroplastic [Benincasa hispida]	[more]
XP_023534875.1	9.5e-125	86.36	psbP domain-containing protein 4, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022936523.1	1.2e-124	85.98	psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035...	[more]
KAG6592174.1	1.2e-124	85.98	PsbP domain-containing protein 4, chloroplastic, partial [Cucurbita argyrosperma...	[more]

BLAST of Lag0038376 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49292	5.1e-97	77.23	PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LXX5	1.7e-15	31.25	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P82538	2.7e-05	26.14	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 ...	[more]

BLAST of Lag0038376 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKA3	1.4e-129	87.88	psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FDH1	6.0e-125	85.98	psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IFH3	1.7e-124	85.98	psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0K501	1.4e-121	84.27	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 S...	[more]
A0A5A7T2U1	5.3e-121	85.07	PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Lag0038376 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77090.1	3.6e-98	77.23	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]
AT3G56650.1	1.2e-16	31.25	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]
AT3G55330.1	1.9e-06	26.14	PsbP-like protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 116..264 e-value: 6.1E-26 score: 93.3
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 34..264
None	No IPR available	PANTHER	PTHR31407:SF38	PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	coord: 34..264
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 120..263 e-value: 3.0E-12 score: 46.9
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 112..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038376.1	Lag0038376.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding