Lag0038366 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038366
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr2: 15988339 .. 15988960 (+)
RNA-Seq ExpressionLag0038366
SyntenyLag0038366
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAAGGGGAAGACAGCTACCAGACCTCCCAAAAGAAGGCAGAGAACGAGGACATAGAAGGGTTGATTGGACAGGAGGGGCCAGTCTTCACCGACGAGATAATGGGAGGGGAGGTGCCGCACAAATTCAGGATACCAAACTTCCCGTAGTATGATGGGAAGAAGGATCCGAAACAACACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACGAGGTGCCGAGCCTTTGCACTAACGCTCATAGGTTTAGCAAGGCAGTGGTTTGGCAAGATCCCGCGAAGGTTAATCGGCTCTTTTAGAGAGCTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAGAAGCCTCAAATCAACTTTTTGACAGTAAAGCATGGGCCCCAGGAAAGCCTGAAAGATTATATTAACAGATTCAATAACGAAGTTTTACAGGTGGAAGGATACGATGACGGAGTTGCCTTGACCACTGTGATTTTAGGCTTACAGGATGAAAGGCTACTCAACTCAATTGGAGAGAGCCAACCACGAACGTACGGGGAATTTATGACCCGAGAACAAAGATACATAAATGCAGAGGAGCTGTTGAGATAA

mRNA sequence

ATGGCTAAAAGGGGAAGACAGCTACCAGACCTCCCAAAAGAAGGCAGAGAACGAGGACATAGAAGGGTTGATTGGACAGGAGGGGCCAGTCTTCACCGACGAGATAATGGGAGGGGAGGTGCCGCACAAATTCAGGATACCAAACTTCCCGTAACTTGGATGGACTTTCATGGGGCGAACGAAGCAACGAGGTGCCGAGCCTTTGCACTAACGCTCATAGGTTTAGCAAGGCAGTGGTTTGGCAAGATCCCGCGAAGGTTAATCGGCTCTTTTAGAGAGCTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAGAAGCCTCAAATCAACTTTTTGACAGTAAAGCATGGGCCCCAGGAAAGCCTGAAAGATTATATTAACAGATTCAATAACGAAGTTTTACAGGTGGAAGGATACGATGACGGAGTTGCCTTGACCACTGTGATTTTAGGCTTACAGGATGAAAGGCTACTCAACTCAATTGGAGAGAGCCAACCACGAACGTACGGGGAATTTATGACCCGAGAACAAAGATACATAAATGCAGAGGAGCTGTTGAGATAA

Coding sequence (CDS)

ATGGCTAAAAGGGGAAGACAGCTACCAGACCTCCCAAAAGAAGGCAGAGAACGAGGACATAGAAGGGTTGATTGGACAGGAGGGGCCAGTCTTCACCGACGAGATAATGGGAGGGGAGGTGCCGCACAAATTCAGGATACCAAACTTCCCGTAACTTGGATGGACTTTCATGGGGCGAACGAAGCAACGAGGTGCCGAGCCTTTGCACTAACGCTCATAGGTTTAGCAAGGCAGTGGTTTGGCAAGATCCCGCGAAGGTTAATCGGCTCTTTTAGAGAGCTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAGAAGCCTCAAATCAACTTTTTGACAGTAAAGCATGGGCCCCAGGAAAGCCTGAAAGATTATATTAACAGATTCAATAACGAAGTTTTACAGGTGGAAGGATACGATGACGGAGTTGCCTTGACCACTGTGATTTTAGGCTTACAGGATGAAAGGCTACTCAACTCAATTGGAGAGAGCCAACCACGAACGTACGGGGAATTTATGACCCGAGAACAAAGATACATAAATGCAGAGGAGCTGTTGAGATAA

Protein sequence

MAKRGRQLPDLPKEGRERGHRRVDWTGGASLHRRDNGRGGAAQIQDTKLPVTWMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELLR
Homology
BLAST of Lag0038366 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-30
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 0

Query: 53  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQ 112
           W D +   EA RCR F+ TL G AR WF ++ R  I SF+ELA AFVTQF+G R + KP 
Sbjct: 33  WADIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPV 92

Query: 113 INFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPRT 172
              LT+K    ESLK+Y+ RFN E LQVEG  D VAL   + G++DERL+ S G+  P T
Sbjct: 93  TYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGT 152

Query: 173 YGEFMTREQRYINAEELL 191
           + E ++R Q+Y++A EL+
Sbjct: 153 FMEALSRAQKYMSAGELI 170

BLAST of Lag0038366 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-30
Identity = 69/136 (50.74%), Postives = 90/136 (66.18%), Query Frame = 0

Query: 53  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQ 112
           WMD +G +EA RCR F+ TL G AR WF ++ R  I SF+ LARAFVTQF+G R R +P 
Sbjct: 217 WMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPV 276

Query: 113 INFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPRT 172
              LT+K    ESL+DY+ RFN E LQVEG  D V+L   + G++DE L  S G+  P T
Sbjct: 277 AYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNT 336

Query: 173 YGEFMTREQRYINAEE 189
           + E ++R QRY++A E
Sbjct: 337 FSEALSRAQRYMSAGE 352

BLAST of Lag0038366 vs. NCBI nr
Match: XP_024042801.1 (uncharacterized protein LOC112099618 [Citrus clementina])

HSP 1 Score: 138.7 bits (348), Expect = 5.4e-29
Identity = 67/138 (48.55%), Postives = 93/138 (67.39%), Query Frame = 0

Query: 52  TWMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKP 111
           +WM+  GA+ A  CRAF+LTLI  AR+W+ K+    I SF +L++  V QF+GAR +Q P
Sbjct: 22  SWMELQGASGAAMCRAFSLTLIEAARRWYRKLRPGSISSFAQLSQILVNQFVGARDQQFP 81

Query: 112 QINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPR 171
              FL VK G  ESLKD I RFN EV++VE Y D VALTT+++GLQ  +   S+ ++  R
Sbjct: 82  PTYFLLVKQGKDESLKDCITRFNKEVVRVENYSDAVALTTIMVGLQPGKFHYSLAKNPAR 141

Query: 172 TYGEFMTREQRYINAEEL 190
           T+ E ++R Q+Y N +EL
Sbjct: 142 TFTELLSRAQKYSNVDEL 159

BLAST of Lag0038366 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 53  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQ 112
           WMD +G +EA +CR F+ TL G AR WF ++ R  I SF+ LA+AFVTQF+G RSR +P 
Sbjct: 37  WMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPV 96

Query: 113 INFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPRT 172
              LT+K    ESL DY+ RFN E LQVEG  + V+L   +  ++DE L  S G+  P T
Sbjct: 97  AYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPST 156

Query: 173 YGEFMTREQRYINAEE 189
           + E ++R Q+Y++A E
Sbjct: 157 FSEALSRAQKYMSAGE 172

BLAST of Lag0038366 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-28
Identity = 67/138 (48.55%), Postives = 87/138 (63.04%), Query Frame = 0

Query: 53  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQ 112
           W D +G  EA RCR F+ TL G  R WF ++ R+ I SF+ELARAFVTQF G  +R +P 
Sbjct: 33  WTDIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPV 92

Query: 113 INFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPRT 172
              LT+K    ESLKDY+ RFN E LQVEG  D V L   I G++DE+L+ S G+    T
Sbjct: 93  AYLLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGT 152

Query: 173 YGEFMTREQRYINAEELL 191
           + E  +R Q Y++  EL+
Sbjct: 153 FSEARSRAQTYMSVGELI 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158344.12.2e-3050.00uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022158830.12.9e-3050.74uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_024042801.15.4e-2948.55uncharacterized protein LOC112099618 [Citrus clementina][more]
XP_022150035.11.6e-2847.79uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022147761.12.7e-2848.55uncharacterized protein LOC111016619 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 67..157
e-value: 2.4E-9
score: 37.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038366.1Lag0038366.1mRNA