Lag0038359 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038359
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	MFS domain-containing protein
Location	chr2: 15925743 .. 15926349 (+)
RNA-Seq Expression	Lag0038359
Synteny	Lag0038359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATTCTCAGCAGAAGATTCCAAGCAACAGAAGGGGAGAAAGACTCGGATTCCTCGGAGATTGAAAAGGAAGAACAGTAAAAAGTGAAATTGGAAGAAGAGGGGAGATTTGGAAGCAGTGACTTTGATATTGGTCAATTTGGCTGCTATTATGGAGAGGGTCGATTAGTCCTTGTTGCATGGAGTCTACAAGGAGGTCGGGACGACTCTGCACATCGATCCCACTGGGTTGGGTTCGCTCACTCTCTTCAGATCTATAGTTCAGTCTTCTTGTTACCCTTTAGCTGCTTACTTAGTTGTCCATCACAACCGCGCCCATGTCATTGCTCTTGGTGTTTTTCTTTGGGCCGCCGCCACTTTCCTCGTTGCCCTTTCCTCCTCATTTTTCCAGGTTCGTCTTTCTCATCTCTCTCTGTTCATCTCCAATTAAAGCCACACACACACACATATAGAATAGATCCTCTTTGTTTGATCGATTCTTAAGCTTACTAATTTAACATTCCTCGAAGATGATTAGGAAAGAATCGGTACCTTGCTATTCTGGAATTGGAAGATTCATGGTGTTGGTGATCATGAATATGAGTTTAGCTTGTTCATTGAGTAG

mRNA sequence

ATGACCATTCTCAGCAGAAGATTCCAAGCAACAGAAGGGGAGAAAGACTCGGATTCCTCGGAGATTGAAAAGGAAGAACAATCTATAGTTCAGTCTTCTTGTTACCCTTTAGCTGCTTACTTAGTTGTCCATCACAACCGCGCCCATGTCATTGCTCTTGGTGTTTTTCTTTGGGCCGCCGCCACTTTCCTCGTTGCCCTTTCCTCCTCATTTTTCCAGGAAAGAATCGGTACCTTGCTATTCTGGAATTGGAAGATTCATGGTGTTGGTGATCATGAATATGAGTTTAGCTTGTTCATTGAGTAG

Coding sequence (CDS)

ATGACCATTCTCAGCAGAAGATTCCAAGCAACAGAAGGGGAGAAAGACTCGGATTCCTCGGAGATTGAAAAGGAAGAACAATCTATAGTTCAGTCTTCTTGTTACCCTTTAGCTGCTTACTTAGTTGTCCATCACAACCGCGCCCATGTCATTGCTCTTGGTGTTTTTCTTTGGGCCGCCGCCACTTTCCTCGTTGCCCTTTCCTCCTCATTTTTCCAGGAAAGAATCGGTACCTTGCTATTCTGGAATTGGAAGATTCATGGTGTTGGTGATCATGAATATGAGTTTAGCTTGTTCATTGAGTAG

Protein sequence

MTILSRRFQATEGEKDSDSSEIEKEEQSIVQSSCYPLAAYLVVHHNRAHVIALGVFLWAAATFLVALSSSFFQERIGTLLFWNWKIHGVGDHEYEFSLFIE

Homology

[Close]

BLAST of Lag0038359 vs. NCBI nr
Match: KAB5548152.1 (hypothetical protein DKX38_011558 [Salix brachista])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 27  QSIVQSSCYPLAAYLVVHHNRAHVIALGVFLWAAATFLVALSSSFFQ------ERIGTLL 86
           +SIVQSSCYPLAAYL VHHNRAHVIALG FLWAAATFLVA+SS+FF+      E +G L 
Sbjct: 50  RSIVQSSCYPLAAYLAVHHNRAHVIALGAFLWAAATFLVAISSTFFEKNSCICEMLGCLD 109

Query: 87  FWNWKIHGVGDHEYEFSL 99
           ++ W I      ++ F+L
Sbjct: 110 YY-WPITTTPAIDFRFNL 126

[Close]

BLAST of Lag0038359 vs. NCBI nr
Match: KAA0036296.1 (Protein spinster [Cucumis melo var. makuwa] >TYK12690.1 Protein spinster [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-14
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 27  QSIVQSSCYPLAAYLVVHHNRAHVIALGVFLWAAATFLVALSSSFFQERIGTLL 81
           +S+VQSSCYPLAAYL VHHNRAHVIA+G FLWAAATFLVA+SS+FFQ  I   L
Sbjct: 120 RSVVQSSCYPLAAYLAVHHNRAHVIAVGAFLWAAATFLVAISSTFFQVAISRAL 173

[Close]

BLAST of Lag0038359 vs. NCBI nr
Match: XP_004143560.1 (uncharacterized protein LOC101211597 isoform X1 [Cucumis sativus] >KAE8647557.1 hypothetical protein Csa_004009 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-14
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 27 QSIVQSSCYPLAAYLVVHHNRAHVIALGVFLWAAATFLVALSSSFFQERI 77
          +S+VQSSCYPLAAYL VHHNRAHVIA+G FLWAAATFLVALSS+FFQ  I
Sbjct: 50 RSVVQSSCYPLAAYLAVHHNRAHVIAVGAFLWAAATFLVALSSTFFQVAI 99

[Close]

BLAST of Lag0038359 vs. NCBI nr
Match: XP_008440603.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484977 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-14
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 27  QSIVQSSCYPLAAYLVVHHNRAHVIALGVFLWAAATFLVALSSSFFQERIGTLL 81
           +S+VQSSCYPLAAYL VHHNRAHVIA+G FLWAAATFLVA+SS+FFQ  I   L
Sbjct: 50  RSVVQSSCYPLAAYLAVHHNRAHVIAVGAFLWAAATFLVAISSTFFQVAISRAL 103

[Close]

BLAST of Lag0038359 vs. NCBI nr
Match: XP_031742935.1 (uncharacterized protein LOC101211597 isoform X2 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-14
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 27 QSIVQSSCYPLAAYLVVHHNRAHVIALGVFLWAAATFLVALSSSFFQERI 77
          +S+VQSSCYPLAAYL VHHNRAHVIA+G FLWAAATFLVALSS+FFQ  I
Sbjct: 50 RSVVQSSCYPLAAYLAVHHNRAHVIAVGAFLWAAATFLVALSSTFFQVAI 99

The following BLAST results are available for this feature:

BLAST of Lag0038359 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5548152.1	2.6e-14	61.54	hypothetical protein DKX38_011558 [Salix brachista]	[more]
KAA0036296.1	7.6e-14	77.78	Protein spinster [Cucumis melo var. makuwa] >TYK12690.1 Protein spinster [Cucumi...	[more]
XP_004143560.1	7.6e-14	84.00	uncharacterized protein LOC101211597 isoform X1 [Cucumis sativus] >KAE8647557.1 ...	[more]
XP_008440603.1	7.6e-14	77.78	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484977 [Cucumis me...	[more]
XP_031742935.1	7.6e-14	84.00	uncharacterized protein LOC101211597 isoform X2 [Cucumis sativus]	[more]

BLAST of Lag0038359 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	PANTHER	PTHR23505:SF62	OS09G0371400 PROTEIN	coord: 27..73
None	No IPR available	PANTHER	PTHR23505	SPINSTER	coord: 27..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038359.1	Lag0038359.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity