Lag0038358 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038358
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr2: 15922073 .. 15922573 (-)
RNA-Seq Expression	Lag0038358
Synteny	Lag0038358

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGACAAATTCGTCTCTTCTTCTCAGCAACCAAACAACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTTGAAGAGAAAGACTACGAAATTGCTTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGGAAGACCACATTACAAGATCAGTCACAACACTCTGCTTCTATTGTTCACTGTCTGTACAACAGCTCCAAGATATGA

mRNA sequence

ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGACAAATTCGTCTCTTCTTCTCAGCAACCAAACAACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTTGAAGAGAAAGACTACGAAATTGCTTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGGAAGACCACATTACAAGATCAGTCACAACACTCTGCTTCTATTGTTCACTGTCTGTACAACAGCTCCAAGATATGA

Coding sequence (CDS)

ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGACAAATTCGTCTCTTCTTCTCAGCAACCAAACAACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTTGAAGAGAAAGACTACGAAATTGCTTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGGAAGACCACATTACAAGATCAGTCACAACACTCTGCTTCTATTGTTCACTGTCTGTACAACAGCTCCAAGATATGA

Protein sequence

MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIKDKGKTTLQDQSQHSASIVHCLYNSSKI

Homology

[Close]

BLAST of Lag0038358 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAEN 60
           M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDYEIASL 120
            + + + S+S +    + PDVMSVMM D    E  MAE+E+KI++L+K+V+E+D+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI 157
           K QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSV 159

[Close]

BLAST of Lag0038358 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAEN 60
           M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDYEIASL 120
            + + + S+S +    + PDVMSVMM D    E  MAE+E+KI++L+K+V+E+D+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI 157
           K QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSV 159

[Close]

BLAST of Lag0038358 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAEN 60
           M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDYEIASL 120
            + + + S+S +    + PDVMSVMM D    E  MAE+E+KI++L+K+V+E+D+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI 157
           K QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSV 159

[Close]

BLAST of Lag0038358 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAEN 60
           M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDYEIASL 120
            + + + S+S +    + PDVMSVMM D    E  MAE+E+KI++L+K+V+E+D+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI 157
           K QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSV 159

[Close]

BLAST of Lag0038358 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 73/160 (45.62%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAEN 60
           M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60

Query: 61  LMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDYEIASL 120
            + + + S+S +    + PDVMSVMM D    E  MAE+E+KI++L+K+V+E+D+EIA+L
Sbjct: 61  PLYNDYDSASSRSLKEAHPDVMSVMMADVAV-ETAMAEMERKINLLMKVVDERDHEIAAL 120

Query: 121 KSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI 157
           K QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Sbjct: 121 KEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSV 159

The following BLAST results are available for this feature:

BLAST of Lag0038358 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	1.2e-21	45.63	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.2e-21	45.63	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	1.2e-21	45.63	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	1.2e-21	45.63	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	1.2e-21	45.63	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Lag0038358 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038358.1	Lag0038358.1	mRNA