Lag0038354 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038354
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr2: 15903877 .. 15904530 (-)
RNA-Seq Expression	Lag0038354
Synteny	Lag0038354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTACACTGCAGAATCAGAGACAAGATCGAAGGGAAAGAGGACTAGTAGCGTGACCAGCAAGGTTAGGGGGCTCAGACCTACAGATAGTACAATTATGAGGAGCCCAGAACCAAGCACACTTAAGGGACGTGACCACACAATTTCAACACCAAGTTACAGCCATTTCGAGGCAGACCTGAAGGATTTGATCGAGGAGAAGCGTAAAAGTGCCAAGGCAGTCGAGGCTGAGACCAGAGCTGCTGAGGCCAGAGCAGCCGAGGCAGAAACCAAGAAGGACAATCTCCTTTGGAAGACTGAGCTTCTGAACACACTAAAGGAGCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAAGGATCCTAGAGAACAAGACTTGGAAGAACTGATCGACCAAGTCGACCCACCCTTCACGAAAGAGGTCATGAAAGCCGAGGTACCCCAGAAGTTTAAGGTACTTACATTCAAACCGTATGATGGCAAGAAAGACCCCCTGCAACATCTAAACACCTACAGAAATTGGATGGACTTCCACGACTTCTCAGATGCAATCAGGTGTCGCGCTTTCTCTTTCACTCTGACAAGATCAACCAAGCATTGGTTTGAAAGGTTGAAGAGGAGATCCATCAGCTCTTTTAAGGAATTAGTCTGA

mRNA sequence

ATGGAGTACACTGCAGAATCAGAGACAAGATCGAAGGGAAAGAGGACTAGTAGCGTGACCAGCAAGGTTAGGGGGCTCAGACCTACAGATAGTACAATTATGAGGAGCCCAGAACCAAGCACACTTAAGGGACGTGACCACACAATTTCAACACCAAGTTACAGCCATTTCGAGGCAGACCTGAAGGATTTGATCGAGGAGAAGCGTAAAAGTGCCAAGGCAGTCGAGGCTGAGACCAGAGCTGCTGAGGCCAGAGCAGCCGAGGCAGAAACCAAGAAGGACAATCTCCTTTGGAAGACTGAGCTTCTGAACACACTAAAGGAGCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAAGGATCCTAGAGAACAAGACTTGGAAGAACTGATCGACCAAGTCGACCCACCCTTCACGAAAGAGGTCATGAAAGCCGAGGTACCCCAGAAGTTTAAGGTACTTACATTCAAACCGTATGATGGCAAGAAAGACCCCCTGCAACATCTAAACACCTACAGAAATTGGATGGACTTCCACGACTTCTCAGATGCAATCAGGTGTCGCGCTTTCTCTTTCACTCTGACAAGATCAACCAAGCATTGGTTTGAAAGGTTGAAGAGGAGATCCATCAGCTCTTTTAAGGAATTAGTCTGA

Coding sequence (CDS)

ATGGAGTACACTGCAGAATCAGAGACAAGATCGAAGGGAAAGAGGACTAGTAGCGTGACCAGCAAGGTTAGGGGGCTCAGACCTACAGATAGTACAATTATGAGGAGCCCAGAACCAAGCACACTTAAGGGACGTGACCACACAATTTCAACACCAAGTTACAGCCATTTCGAGGCAGACCTGAAGGATTTGATCGAGGAGAAGCGTAAAAGTGCCAAGGCAGTCGAGGCTGAGACCAGAGCTGCTGAGGCCAGAGCAGCCGAGGCAGAAACCAAGAAGGACAATCTCCTTTGGAAGACTGAGCTTCTGAACACACTAAAGGAGCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAAGGATCCTAGAGAACAAGACTTGGAAGAACTGATCGACCAAGTCGACCCACCCTTCACGAAAGAGGTCATGAAAGCCGAGGTACCCCAGAAGTTTAAGGTACTTACATTCAAACCGTATGATGGCAAGAAAGACCCCCTGCAACATCTAAACACCTACAGAAATTGGATGGACTTCCACGACTTCTCAGATGCAATCAGGTGTCGCGCTTTCTCTTTCACTCTGACAAGATCAACCAAGCATTGGTTTGAAAGGTTGAAGAGGAGATCCATCAGCTCTTTTAAGGAATTAGTCTGA

Protein sequence

MEYTAESETRSKGKRTSSVTSKVRGLRPTDSTIMRSPEPSTLKGRDHTISTPSYSHFEADLKDLIEEKRKSAKAVEAETRAAEARAAEAETKKDNLLWKTELLNTLKELGNPQGDLQKSKDPREQDLEELIDQVDPPFTKEVMKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWFERLKRRSISSFKELV

Homology

[Close]

BLAST of Lag0038354 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-22
Identity = 60/116 (51.72%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 103 LNTLKELGNPQGDLQKSKDPREQ--DLEELIDQVDPPFTKEVMKAEVPQKFKVLTFKPYD 162
           LN  K +  P+   +K  + +E+  DLEEL+ Q D PFT+E+M+ +VP KFK+ T KP+D
Sbjct: 49  LNKGKPIDRPESS-EKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFD 108

Query: 163 GKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWFERLKRRSISSFKEL 217
           G  +P+ HL+ YR WMD +  SDAIRCR FS TL  S + WF +LKR SISSFK L
Sbjct: 109 GMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSL 163

[Close]

BLAST of Lag0038354 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 6.2e-21
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 126 DLEELIDQVDPPFTKEVMKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAI 185
           DLEEL+DQ D PFT+E+M+ +VP KFK+ T K +D   DP+ HL+ YR WMD +  S+A+
Sbjct: 168 DLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAV 227

Query: 186 RCRAFSFTLTRSTKHWFERLKRRSISSFKEL 217
           RCR FS TL  S + WF +LKR SISSFK L
Sbjct: 228 RCRVFSTTLNGSARIWFRQLKRGSISSFKSL 258

[Close]

BLAST of Lag0038354 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 9.2e-17
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 143 MKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWF 202
           MK +VP KFK+   K YDG  DP+ HL+ Y  W D +  ++AIRCR FSFTLT ST+ WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 203 ERLKRRSISSFKEL 217
           ++LKR+SISSFKEL
Sbjct: 61  QQLKRKSISSFKEL 74

[Close]

BLAST of Lag0038354 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-15
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 143 MKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWF 202
           MK +   KFK+     YDG  DP+ HL+ YR W D +D  +AIRCR FSFTLT S ++WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 203 ERLKRRSISSFKEL 217
            +LKR SISSFKEL
Sbjct: 61  RQLKRNSISSFKEL 74

[Close]

BLAST of Lag0038354 vs. NCBI nr
Match: XP_015383577.1 (uncharacterized protein LOC107176071 [Citrus sinensis])

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-15
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 84  ARAAEAETKKDNLLWKTELLNTLKELGNPQGDLQKSKDP-----REQDLEELID------ 143
           A ++ + T+  N L   +L + L +    Q   + + +P     R Q LE+++       
Sbjct: 23  ANSSSSRTRSRNDLSDDDLRHALNQRRTRQRATRDNDEPSDLQERMQKLEQMVRGMGSQD 82

Query: 144 ----QVDPPFTKEVMKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCR 203
               + +PPFT+E+M+A  P  F++ + +PYDG+KDP++H+  YR+ M+    S AI CR
Sbjct: 83  DMMVESEPPFTQEIMRARYPSGFRLPSIEPYDGQKDPMEHVELYRSLMEVQGVSSAILCR 142

Query: 204 AFSFTLTRSTKHWFERLKRRSISSFKELV 218
           AF  TL+ + + WF RL+  SISSF EL+
Sbjct: 143 AFPLTLSGAARRWFRRLRPNSISSFNELI 171

[Close]

BLAST of Lag0038354 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 60/116 (51.72%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 103 LNTLKELGNPQGDLQKSKDPREQ--DLEELIDQVDPPFTKEVMKAEVPQKFKVLTFKPYD 162
           LN  K +  P+   +K  + +E+  DLEEL+ Q D PFT+E+M+ +VP KFK+ T KP+D
Sbjct: 49  LNKGKPIDRPESS-EKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFD 108

Query: 163 GKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWFERLKRRSISSFKEL 217
           G  +P+ HL+ YR WMD +  SDAIRCR FS TL  S + WF +LKR SISSFK L
Sbjct: 109 GMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSL 163

[Close]

BLAST of Lag0038354 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-21
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 126 DLEELIDQVDPPFTKEVMKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAI 185
           DLEEL+DQ D PFT+E+M+ +VP KFK+ T K +D   DP+ HL+ YR WMD +  S+A+
Sbjct: 168 DLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAV 227

Query: 186 RCRAFSFTLTRSTKHWFERLKRRSISSFKEL 217
           RCR FS TL  S + WF +LKR SISSFK L
Sbjct: 228 RCRVFSTTLNGSARIWFRQLKRGSISSFKSL 258

[Close]

BLAST of Lag0038354 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-17
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 143 MKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWF 202
           MK +VP KFK+   K YDG  DP+ HL+ Y  W D +  ++AIRCR FSFTLT ST+ WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 203 ERLKRRSISSFKEL 217
           ++LKR+SISSFKEL
Sbjct: 61  QQLKRKSISSFKEL 74

[Close]

BLAST of Lag0038354 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 143 MKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCRAFSFTLTRSTKHWF 202
           MK +   KFK+     YDG  DP+ HL+ YR W D +D  +AIRCR FSFTLT S ++WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 203 ERLKRRSISSFKEL 217
            +LKR SISSFKEL
Sbjct: 61  RQLKRNSISSFKEL 74

[Close]

BLAST of Lag0038354 vs. ExPASy TrEMBL
Match: A0A7J0DBQ5 (Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0019390 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-15
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 74  AVEAETRAAEARA----AEAETKKDNLLWKTELLNTLKELGNPQGDLQKSKDPREQDLEE 133
           A EA++ A +++A    A   T +   +W  ++     +L    G +   K+     +EE
Sbjct: 155 ADEAQSHAVQSKAKTVVALEHTGETRPIWDEQMRQMQAQLA---GVIAAVKEKGTNSVEE 214

Query: 134 LIDQVDPPFTKEVMKAEVPQKFKVLTFKPYDGKKDPLQHLNTYRNWMDFHDFSDAIRCRA 193
           LI++ D PFT  VM+  +P KFK+ T +P+DG KDPL HL TY+  MD     D I CRA
Sbjct: 215 LINRTDTPFTPAVMRVSLPLKFKMPTLEPFDGTKDPLDHLETYKALMDLQAVPDEIMCRA 274

Query: 194 FSFTLTRSTKHWFERLKRRSISSFKEL 217
           F  TL  ST+ WF RL   +IS F +L
Sbjct: 275 FPTTLKGSTRIWFHRLPPGTISKFVDL 298

The following BLAST results are available for this feature:

BLAST of Lag0038354 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159109.1	3.3e-22	51.72	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022158830.1	6.2e-21	57.14	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022147761.1	9.2e-17	59.46	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158344.1	3.9e-15	56.76	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_015383577.1	3.9e-15	34.90	uncharacterized protein LOC107176071 [Citrus sinensis]	[more]

BLAST of Lag0038354 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1E7	1.6e-22	51.72	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DWY0	3.0e-21	57.14	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D3B7	4.5e-17	59.46	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DZ49	1.9e-15	56.76	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A7J0DBQ5	2.4e-15	38.78	Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0...	[more]

BLAST of Lag0038354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038354.1	Lag0038354.1	mRNA