Lag0038340 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038340
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr2: 15752532 .. 15753462 (-)
RNA-Seq ExpressionLag0038340
SyntenyLag0038340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGACAATGTTCTAGTAGGATTCGAGTGTATCCATGCCCTTAACAATAGGAGGAAAGGAAAAACGGGGTATCTAGCCATCAAGCTAGACATGAGCAAGGCATACGATCGAGTGGAATGGGAGTTCATCGAAGAGCTTATGAGAAGTATGAACTTCAGTGAAAACTGGATTCAGAAGGTTCTAAATTGCATCTCTACGGTGAACTACTCTATTCTCATCAATGGTTCCCCCATGGGTAATGTTAAACCAAGTAGAGGACTTAGGCAAAGAGACCCTCTCTCCCCTTACCTGTTCCTCCTCTGTGGGGAAGGTTTCTCGGCTCTTTTGGAAAAAGGAGGAATCTCTTCATAATCTGTCTGGTTTCCAAATTAATAAATATTGTCCTATGCTAACTCACCTTTTCTTTGCAGATGACAGTCTCATTTTCGTCAAAGCTCAAAGGAAAGACCTATCAACCTTTAAAAGGATCCTGAGTTGGTACGAGGAGGCATCGGGACAAACCATCAACTTGGAAAAGTCATCCTTTATGACGAGCAGGAATATAGTGAGTGAGGCCGCGGCTGAATGTGAAAATTTGCTAGGAATCAAGAGAACAAATTCACTAGGCCAATACTTGGGCATGCCGGCTCAGGTGGGAAGAAACAAAGGTCTCGTATTCAGAAGAATCAAGGATAGGGTGGAAAAAGTTCTTCAAGGCTGGAAGGAGAAGCTTTTCTCCCTTGGGGGAAAAAAAGTTCTCATAAAATCAATAGCCCAAGTCATTCCCACCTATACTATGAATTGTTTTAAGCTCCCAATCAGCATCTGCAGGGAGATTGATCGCCTTTGTGCCAGTTTTTGGTGGGGTGAAGCACGAGGGAAAAGGAAGGCCCATTGGATGAGCTGGAGCAAGTTGTGTAGAAGTAAAGAGGGGGGGTCTGGGATTTAG

mRNA sequence

ATGTCTGACAATGTTCTAGTAGGATTCGAGTGTATCCATGCCCTTAACAATAGGAGGAAAGGAAAAACGGGGTATCTAGCCATCAAGCTAGACATGAGCAAGGCATACGATCGAGTGGAATGGGAGTTCATCGAAGAGCTTATGAGAAGTATGAACTTCAGTGAAAACTGGATTCAGAAGGTTCTAAATTGCATCTCTACGGTGAACTACTCTATTCTCATCAATGGTTCCCCCATGGGTAATGTTAAACCAAGTAGAGGACTTAGGCAAAGAGACCCTCTCTCCCCTTACCTGTTCCTCCTCTGTGGGGAAGATGACAGTCTCATTTTCGTCAAAGCTCAAAGGAAAGACCTATCAACCTTTAAAAGGATCCTGAGTTGGTACGAGGAGGCATCGGGACAAACCATCAACTTGGAAAAGTCATCCTTTATGACGAGCAGGAATATAGTGAGTGAGGCCGCGGCTGAATGTGAAAATTTGCTAGGAATCAAGAGAACAAATTCACTAGGCCAATACTTGGGCATGCCGGCTCAGGTGGGAAGAAACAAAGGTCTCGTATTCAGAAGAATCAAGGATAGGGTGGAAAAAGTTCTTCAAGGCTGGAAGGAGAAGCTTTTCTCCCTTGGGGGAAAAAAAGTTCTCATAAAATCAATAGCCCAAGTCATTCCCACCTATACTATGAATTGTTTTAAGCTCCCAATCAGCATCTGCAGGGAGATTGATCGCCTTTGTGCCAGTTTTTGGTGGGGTGAAGCACGAGGGAAAAGGAAGGCCCATTGGATGAGCTGGAGCAAGTTGTGTAGAAGTAAAGAGGGGGGGTCTGGGATTTAG

Coding sequence (CDS)

ATGTCTGACAATGTTCTAGTAGGATTCGAGTGTATCCATGCCCTTAACAATAGGAGGAAAGGAAAAACGGGGTATCTAGCCATCAAGCTAGACATGAGCAAGGCATACGATCGAGTGGAATGGGAGTTCATCGAAGAGCTTATGAGAAGTATGAACTTCAGTGAAAACTGGATTCAGAAGGTTCTAAATTGCATCTCTACGGTGAACTACTCTATTCTCATCAATGGTTCCCCCATGGGTAATGTTAAACCAAGTAGAGGACTTAGGCAAAGAGACCCTCTCTCCCCTTACCTGTTCCTCCTCTGTGGGGAAGATGACAGTCTCATTTTCGTCAAAGCTCAAAGGAAAGACCTATCAACCTTTAAAAGGATCCTGAGTTGGTACGAGGAGGCATCGGGACAAACCATCAACTTGGAAAAGTCATCCTTTATGACGAGCAGGAATATAGTGAGTGAGGCCGCGGCTGAATGTGAAAATTTGCTAGGAATCAAGAGAACAAATTCACTAGGCCAATACTTGGGCATGCCGGCTCAGGTGGGAAGAAACAAAGGTCTCGTATTCAGAAGAATCAAGGATAGGGTGGAAAAAGTTCTTCAAGGCTGGAAGGAGAAGCTTTTCTCCCTTGGGGGAAAAAAAGTTCTCATAAAATCAATAGCCCAAGTCATTCCCACCTATACTATGAATTGTTTTAAGCTCCCAATCAGCATCTGCAGGGAGATTGATCGCCTTTGTGCCAGTTTTTGGTGGGGTGAAGCACGAGGGAAAAGGAAGGCCCATTGGATGAGCTGGAGCAAGTTGTGTAGAAGTAAAGAGGGGGGGTCTGGGATTTAG

Protein sequence

MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQKVLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGEDDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSRNIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFSLGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLCRSKEGGSGI
Homology
BLAST of Lag0038340 vs. NCBI nr
Match: XP_030946812.1 (uncharacterized protein LOC115971195 [Quercus lobata])

HSP 1 Score: 298.9 bits (764), Expect = 4.5e-77
Identity = 145/306 (47.39%), Postives = 192/306 (62.75%), Query Frame = 0

Query: 1   MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
           +SDN+LV FE +H L  + KGKTG++AIKLDMSKAYDRVEW F+E++M  + F   WI  
Sbjct: 554 ISDNILVAFETLHHLKTKTKGKTGFMAIKLDMSKAYDRVEWAFLEKVMEKLGFDNRWITL 613

Query: 61  VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
           V +CI +V++S+L+NG P GN  P+RGLRQ DPLSPYLFLLC E                
Sbjct: 614 VSSCIRSVSFSVLVNGEPHGNFTPNRGLRQGDPLSPYLFLLCAEGLHSLIQQVEISGSIK 673

Query: 121 -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                            DDSL+F +A  +++S+   IL  YEEASGQ IN EK+    S 
Sbjct: 674 GVSLCSTVPKVSHLFFADDSLLFCRANSQEVSSIMEILKQYEEASGQQINREKTQLFFSP 733

Query: 181 NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
           N       E + LLG+  T +  +YLG+P+ VGR K   F  I++RV + +QGWKE+L S
Sbjct: 734 NTDPHVQEEIKTLLGVAATTNYEKYLGLPSFVGRGKKQSFAYIRERVWQKMQGWKERLLS 793

Query: 241 LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 274
            GG++VLIK++ Q +PT+TM CFKLP S+C++I+ L   FWWG     RK HW+ W KLC
Sbjct: 794 QGGREVLIKAVLQAMPTFTMGCFKLPKSLCKDIESLIRKFWWGYKGEARKIHWVGWKKLC 853

BLAST of Lag0038340 vs. NCBI nr
Match: XP_030936723.1 (uncharacterized protein LOC115961982 [Quercus lobata])

HSP 1 Score: 298.5 bits (763), Expect = 5.9e-77
Identity = 142/309 (45.95%), Postives = 195/309 (63.11%), Query Frame = 0

Query: 1   MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
           ++DN+LV FE +H + N   GK+G++A+KLDMSKAYDRVEW F+ ++M+ M FS+ WI  
Sbjct: 459 ITDNILVAFETLHYMKNHNSGKSGFMALKLDMSKAYDRVEWSFLRDIMKQMGFSDKWIAL 518

Query: 61  VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
           V+ C++TV+YS+L+NG P GN+KPSRG+RQ DPLSPYLFLLC E                
Sbjct: 519 VMECVTTVSYSLLVNGEPQGNIKPSRGIRQGDPLSPYLFLLCFEGLHRLIQRAANLGEIQ 578

Query: 121 -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                            DDSL+F +A ++D      ILS YE+ SGQ +N EK+S   S+
Sbjct: 579 GVSICRNGPKLTHLLFADDSLLFCRATKQDCRKVLEILSSYEKVSGQKLNREKTSLFFSK 638

Query: 181 NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
           +  S+         G+       +YLG+P  VGRNK   F ++K RV K LQGW+ KL S
Sbjct: 639 STASDMQNYIMAEFGVAEVKHYEEYLGLPTLVGRNKRASFDKLKQRVWKRLQGWEGKLLS 698

Query: 241 LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 276
             G++VLIKS+ Q IPT+TM+CFKLP+++C+E + L   FWWG+   +RK HW+ W +LC
Sbjct: 699 QAGREVLIKSVIQSIPTFTMSCFKLPVTLCQEFESLTRKFWWGQRGERRKIHWVRWGELC 758

BLAST of Lag0038340 vs. NCBI nr
Match: XP_023901742.1 (uncharacterized protein LOC112013579 [Quercus suber])

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-76
Identity = 144/309 (46.60%), Postives = 199/309 (64.40%), Query Frame = 0

Query: 1   MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
           ++DNVLV FE +H LN++ +GK  Y++IKLDMSKA+DRVEW FI+ +M  + F E WI  
Sbjct: 395 ITDNVLVAFEFMHYLNHKNEGKENYMSIKLDMSKAFDRVEWSFIKGVMEKLGFMEKWIHL 454

Query: 61  VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
           ++NC+S+V+YS+LING   GN+ PSRG+RQ DPLSP LFLLC E                
Sbjct: 455 IMNCVSSVSYSVLINGEAYGNITPSRGIRQGDPLSPCLFLLCAEGLSALIHEAARNQQIN 514

Query: 121 -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                            DDSL+F KA+ ++      IL+ YEEASGQ IN +KSS   S 
Sbjct: 515 GISICRGCPLITHLFFADDSLLFCKAKEQECHALVSILNRYEEASGQKINTDKSSVFFSP 574

Query: 181 NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
           N   E      N+LG  + +   +YLG+P+ +G++K  VF  +KDRV K L GWK KL S
Sbjct: 575 NTSQELRESIFNILGPMQDSRHSKYLGLPSIIGKSKAQVFAEVKDRVAKKLAGWKGKLLS 634

Query: 241 LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 276
           +GG+++LIK++AQ +PTYTM+CF+LP ++C++++ L  SFWWG+   + K  W+SW K+C
Sbjct: 635 IGGREILIKAVAQAVPTYTMSCFQLPKTLCQDLESLMRSFWWGQKDKENKIAWVSWRKMC 694

BLAST of Lag0038340 vs. NCBI nr
Match: XP_023909336.1 (uncharacterized protein LOC112020997 [Quercus suber])

HSP 1 Score: 297.4 bits (760), Expect = 1.3e-76
Identity = 145/309 (46.93%), Postives = 197/309 (63.75%), Query Frame = 0

Query: 1   MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
           ++DN+L+ FE +H L N+RKGKTGY+A+KLDMSKAYDRVEW F+E LM  + F+  WI  
Sbjct: 554 ITDNILIAFETLHHLKNKRKGKTGYMALKLDMSKAYDRVEWTFLENLMDKLGFARKWIDL 613

Query: 61  VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
           + +CISTV++SILING+P G + P RGLRQ DPLSPYLFLLC E                
Sbjct: 614 IKSCISTVSFSILINGAPYGLIHPQRGLRQGDPLSPYLFLLCAEGLHALIKQAATNGTIS 673

Query: 121 -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                            DDSL+  KA  ++ ++   +L  YE ASGQ IN +K+    S 
Sbjct: 674 GVSLCREGPRVTHLLFADDSLLLCKANSRECNSVLELLEKYERASGQRINRDKTQLFFSS 733

Query: 181 NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
           N   +     ++ LG+  ++ L +YLG+P+ VGR K   F  I++R+ + +QGWKEKL S
Sbjct: 734 NTNQQTRNSIKSSLGVAVSHQLDKYLGLPSFVGRGKKQSFSYIRERIWQKIQGWKEKLLS 793

Query: 241 LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 276
             GK+VLIKSI Q +PTY+MNCFKLP S+C++I+ L   FWWG    +RK HW++W+K+C
Sbjct: 794 QAGKEVLIKSILQAMPTYSMNCFKLPRSLCKDIESLIRKFWWGYRGEQRKTHWVAWNKMC 853

BLAST of Lag0038340 vs. NCBI nr
Match: XP_030923826.1 (uncharacterized protein LOC115950728 [Quercus lobata])

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-76
Identity = 143/309 (46.28%), Postives = 191/309 (61.81%), Query Frame = 0

Query: 1   MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
           ++DN++V +EC+HA++ R+KGK G LA+KLD+SKAYDRVEW F++ +M  M F E WI +
Sbjct: 407 ITDNIMVAYECLHAMHCRKKGKKGSLALKLDISKAYDRVEWAFLKGIMEKMGFPEIWIDR 466

Query: 61  VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
           V++C+ST ++S+ ING P GN+ PSRG+RQ DPLSPYLFLLC E                
Sbjct: 467 VMSCVSTPSFSVCINGKPFGNILPSRGIRQGDPLSPYLFLLCAEGFTSLLAKAELEGQIH 526

Query: 121 -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                            DDSL+F KA + ++     +L  Y  ASGQ IN EKSS     
Sbjct: 527 GMSICRRAPCISNLLFADDSLLFCKATQGEVQVLMEMLDLYASASGQCINFEKSSIFFGS 586

Query: 181 NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
           N  +       NLLG+K       YLG+P  +GR+K   F  +KDRV K LQGWK K+ S
Sbjct: 587 NTEASHKERIINLLGVKEVARFESYLGLPTLIGRSKYQTFSFLKDRVWKKLQGWKGKMLS 646

Query: 241 LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 276
             GK+VLIK++AQ IPTYTM  F+LP+ +C E++ +CA FWWG+   +RK HW SW  L 
Sbjct: 647 KAGKEVLIKAVAQSIPTYTMGVFQLPVKLCNELNAMCARFWWGQVGDERKIHWKSWESLA 706

BLAST of Lag0038340 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-13
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 175 MPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFSLGGKKVLIKSIAQVIPTYTMNCFKLPI 234
           MP    R     F  I +RV   + GW+EK  S  G+  L K++   +P ++M+   LP 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 235 SICREIDRLCASFWWGEARGKRKAHWMSWSKLCR-SKEGGSGI 277
           SI   +D+L  +F WG    K+K H + WSK+C   KEGG G+
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGV 103

BLAST of Lag0038340 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-09
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 222 IPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLCRSKEGGSGI 277
           +P Y M+CF+L   +C+++      FWW     KRK  W++W KLC+SKE   G+
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGL 57

BLAST of Lag0038340 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-07
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 73  LINGSPMGNVKPSRGLRQRDPLSPYLFLLCGEDDSLIFVKAQRK 117
           +ING+P G V PSRGLRQ DPLSPYLF+LC E  S +  +AQ +
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQ 56

BLAST of Lag0038340 vs. ExPASy TrEMBL
Match: A0A5B7BN08 (Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_039618 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.4e-79
Identity = 141/303 (46.53%), Postives = 196/303 (64.69%), Query Frame = 0

Query: 1   MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
           ++DN+LV FE IH L N+RKGK G  A+KLDMSKAYDRVEW F+E +M  M F + W+  
Sbjct: 136 ITDNILVAFELIHCLKNKRKGKMGQSALKLDMSKAYDRVEWSFLEAVMLRMGFHQKWVDL 195

Query: 61  VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
           +++C+STV++S+LING P G +KP+RGLRQ DPLSPYLF+LC E                
Sbjct: 196 IMHCVSTVSFSVLINGDPRGCIKPTRGLRQGDPLSPYLFILCAEAFSALLRKSENENKIH 255

Query: 121 -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                            DDSL+F  A     S   RI+S Y  ASGQ +N EKS+   S 
Sbjct: 256 GISVARNAPRVSHLFFADDSLLFANATENQASEISRIISMYGAASGQQVNFEKSAISFSA 315

Query: 181 NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
           N+ ++   + + +LG+   +   +YLG+P+ +GR+K   F  I+DRV + L+GWKEKL S
Sbjct: 316 NVTADRREQIKQILGVSICSIHNKYLGLPSTIGRSKVQPFNLIRDRVWRKLKGWKEKLLS 375

Query: 241 LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 271
             G++VLIKS+AQ IPTY M+CFK+P++IC EI+R+ ++FWWG+   +RK HW+ W  LC
Sbjct: 376 KAGREVLIKSVAQAIPTYMMSCFKIPVAICEEINRMVSNFWWGQTGSERKLHWLRWDSLC 435

BLAST of Lag0038340 vs. ExPASy TrEMBL
Match: A0A2N9ESZ1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9799 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 4.0e-79
Identity = 137/276 (49.64%), Postives = 195/276 (70.65%), Query Frame = 0

Query: 1    MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
            M+DNVL+ FE +H ++N+R GK G +A+KLDMSKAYDRVEWEF+ ++M  M F   W+  
Sbjct: 919  MTDNVLIAFETLHHMHNQRTGKHGSMALKLDMSKAYDRVEWEFLRQVMIKMGFHSQWVSL 978

Query: 61   VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGEDDSLIFVKAQRKDLST 120
            ++ CI+TV+YS+LING P G++ PSRGLRQ DP+SPYLFL+C EDDSL+F +A + +   
Sbjct: 979  LMECITTVSYSLLINGEPRGHITPSRGLRQGDPISPYLFLICAEDDSLLFCRATQTECQK 1038

Query: 121  FKRILSWYEEASGQTINLEKSSFMTSRNIVSEAAAECENLLGIKRTNSLGQYLGMPAQVG 180
             + IL  YE+ASGQ +N  K++   SRN    A    ++ LG+       +YLG+ + VG
Sbjct: 1039 LQDILQAYEKASGQQLNGAKTTLFFSRNTSQAAQEAIKSTLGVPCIRQYEKYLGLLSLVG 1098

Query: 181  RNKGLVFRRIKDRVEKVLQGWKEKLFSLGGKKVLIKSIAQVIPTYTMNCFKLPISICREI 240
            + K   F +IK+RV   ++GWKEKL S  G+++LIK++ Q IPTYTMNCFKLP+ +C++I
Sbjct: 1099 KEKMQCFSQIKERVWCKVKGWKEKLLSQAGREILIKAVVQAIPTYTMNCFKLPVKLCKDI 1158

Query: 241  DRLCASFWWGEARGKRKAHWMSWSKLCRSKE-GGSG 276
            + +   FWWG+   +RK HW+ W KLC++K+ GG G
Sbjct: 1159 EAIIRRFWWGQKEQERKIHWIKWKKLCQTKDMGGLG 1194

BLAST of Lag0038340 vs. ExPASy TrEMBL
Match: A0A2N9GD63 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25220 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 5.8e-78
Identity = 143/306 (46.73%), Postives = 195/306 (63.73%), Query Frame = 0

Query: 1    MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
            ++DNV V FE +H +  +RKGK G +A+KLDMSKAYDRVEW+F+E +M+ + F+E WI  
Sbjct: 780  ITDNVSVAFEILHKMKAKRKGKQGEMAVKLDMSKAYDRVEWQFVEAIMKKLGFAERWISM 839

Query: 61   VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
            ++ CI TV YS+L++G P G + PSRGLRQ DPLSPYLFLLC E                
Sbjct: 840  IMECIRTVQYSVLLDGVPKGFIIPSRGLRQGDPLSPYLFLLCVEGLSALMRKAGTMGRLK 899

Query: 121  -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                             DDSL+F KA   +   F RIL  YE +SGQ +N EK++   S 
Sbjct: 900  GTKTSRVGPWVSHLFFADDSLLFGKASVAESQEFMRILQLYEASSGQQLNREKTAIFFSS 959

Query: 181  NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
            N V E     ++L G   T +  +YLG+PA +GR+K  +F  +K+R+ + LQGWKEK  S
Sbjct: 960  NTVPETRQAIQDLWGSNGTQNFDKYLGLPALIGRSKRSIFNGLKERIVRRLQGWKEKFLS 1019

Query: 241  LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 274
              G+++LIK++AQ IPTYTMNCF+LP + C E++ L A +WWG+++ +RK HW+ W KLC
Sbjct: 1020 KAGREILIKAVAQSIPTYTMNCFRLPKAWCDEVNSLIAKYWWGQSKDERKIHWLKWDKLC 1079

BLAST of Lag0038340 vs. ExPASy TrEMBL
Match: A0A2N9FP20 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16366 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 7.5e-78
Identity = 142/306 (46.41%), Postives = 193/306 (63.07%), Query Frame = 0

Query: 1    MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
            ++DNV V FE +H +  +RKGK G +A+KLDMSKAYDRVEW+F+E +MR + F+E W+  
Sbjct: 992  ITDNVAVAFEILHKMKAKRKGKQGEMAVKLDMSKAYDRVEWKFVEAMMRKLGFAERWVSM 1051

Query: 61   VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
            ++ CI TV YS+L++G P G V PSRGLRQ DPLSPYLFLLC E                
Sbjct: 1052 IMECICTVQYSVLLDGVPKGYVIPSRGLRQGDPLSPYLFLLCAEGLSALMRQTGTMGRLK 1111

Query: 121  -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                             DDSL+F KA   +   F R+L  YE++SGQ +N EK+S   S 
Sbjct: 1112 GVKTSRAGPWVSHLFFADDSLLFGKASVSESQEFMRLLRLYEDSSGQQLNREKTSIFFSS 1171

Query: 181  NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
            N +     + + L G     +  +YLG+PA +GR+K  +F  +K+R+ + LQGWKEK  S
Sbjct: 1172 NTLPATRQDIQELWGSNGVQNFDKYLGLPALIGRSKRSIFNGLKERIVRRLQGWKEKFLS 1231

Query: 241  LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 274
              G+++LIK++AQ IPTYTMNCF+LP   C E++ L A +WWG++R +RK HW+ W KLC
Sbjct: 1232 KAGREILIKAVAQSIPTYTMNCFRLPKVWCDEVNSLIARYWWGQSRDERKIHWLKWDKLC 1291

BLAST of Lag0038340 vs. ExPASy TrEMBL
Match: A0A2N9G933 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23593 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 7.5e-78
Identity = 142/306 (46.41%), Postives = 193/306 (63.07%), Query Frame = 0

Query: 1    MSDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQK 60
            ++DNV V FE +H +  +RKGK G +A+KLDMSKAYDRVEW+F+E +MR + F+E W+  
Sbjct: 1019 ITDNVAVAFEILHKMKAKRKGKQGEMAVKLDMSKAYDRVEWKFVEAMMRKLGFAERWVSM 1078

Query: 61   VLNCISTVNYSILINGSPMGNVKPSRGLRQRDPLSPYLFLLCGE---------------- 120
            ++ CI TV YS+L++G P G V PSRGLRQ DPLSPYLFLLC E                
Sbjct: 1079 IMECICTVQYSVLLDGVPKGYVIPSRGLRQGDPLSPYLFLLCAEGLSALMRQTGTMGRLK 1138

Query: 121  -----------------DDSLIFVKAQRKDLSTFKRILSWYEEASGQTINLEKSSFMTSR 180
                             DDSL+F KA   +   F R+L  YE++SGQ +N EK+S   S 
Sbjct: 1139 GVKTSRAGPWVSHLFFADDSLLFGKASVSESQEFMRLLRLYEDSSGQQLNREKTSIFFSS 1198

Query: 181  NIVSEAAAECENLLGIKRTNSLGQYLGMPAQVGRNKGLVFRRIKDRVEKVLQGWKEKLFS 240
            N +     + + L G     +  +YLG+PA +GR+K  +F  +K+R+ + LQGWKEK  S
Sbjct: 1199 NTLPATRQDIQELWGSNGVQNFDKYLGLPALIGRSKRSIFNGLKERIVRRLQGWKEKFLS 1258

Query: 241  LGGKKVLIKSIAQVIPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLC 274
              G+++LIK++AQ IPTYTMNCF+LP   C E++ L A +WWG++R +RK HW+ W KLC
Sbjct: 1259 KAGREILIKAVAQSIPTYTMNCFRLPKVWCDEVNSLIARYWWGQSRDERKIHWLKWDKLC 1318

BLAST of Lag0038340 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-10
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 222 IPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKLCRSKEGGSGI 277
           +P Y M+CF+L   +C+++      FWW     KRK  W++W KLC+SKE   G+
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGL 57

BLAST of Lag0038340 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09
Identity = 22/60 (36.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 2  SDNVLVGFECIHALNNRRKGKTGYLAIKLDMSKAYDRVEWEFIEELMRSMNFSENWIQKV 61
          +DN++   E +H++  R+KG  G++ +KLD+ KAYDR+ W+++E+ + S  F E W+ ++
Sbjct: 27 TDNIVFVQEAVHSM-RRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWLPEI 85

BLAST of Lag0038340 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-09
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 222 IPTYTMNCFKLPISICREIDRLCASFWWGEARGKRKAHWMSWSKL-CRSKEGGSG 276
           +PTYTM CF LP ++C++I  + A FWW   +  +  HW +W  L C   EGG G
Sbjct: 3   LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIG 57

BLAST of Lag0038340 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-08
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 73  LINGSPMGNVKPSRGLRQRDPLSPYLFLLCGEDDSLIFVKAQRK 117
           +ING+P G V PSRGLRQ DPLSPYLF+LC E  S +  +AQ +
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQ 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030946812.14.5e-7747.39uncharacterized protein LOC115971195 [Quercus lobata][more]
XP_030936723.15.9e-7745.95uncharacterized protein LOC115961982 [Quercus lobata][more]
XP_023901742.11.0e-7646.60uncharacterized protein LOC112013579 [Quercus suber][more]
XP_023909336.11.3e-7646.93uncharacterized protein LOC112020997 [Quercus suber][more]
XP_030923826.11.7e-7646.28uncharacterized protein LOC115950728 [Quercus lobata][more]
Match NameE-valueIdentityDescription
P0C2F63.7e-1336.89Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
P932953.2e-0940.00Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P925553.0e-0761.36Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5B7BN081.4e-7946.53Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 ... [more]
A0A2N9ESZ14.0e-7949.64Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9799 PE=4 SV=1[more]
A0A2N9GD635.8e-7846.73Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9FP207.5e-7846.41Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9G9337.5e-7846.41Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
ATMG00310.12.3e-1040.00RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G20520.15.6e-0936.67RNA binding;RNA-directed DNA polymerases [more]
AT4G29090.19.6e-0943.64Ribonuclease H-like superfamily protein [more]
ATMG01250.12.1e-0861.36RNA-directed DNA polymerase (reverse transcriptase) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 12..102
e-value: 1.8E-11
score: 44.0
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 10..273
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 10..273
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 7..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038340.1Lag0038340.1mRNA