Lag0038294 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038294
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon protein
Location	chr2: 14849860 .. 14850618 (+)
RNA-Seq Expression	Lag0038294
Synteny	Lag0038294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTATCTTGTCTTCCACTGGAGGACAACCTAACTTCAAGAAAATACTCGACCACTGAAAGTTTATCACTCGTCTGTTCGCAGAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGTAGATCGCCCCAGACATCGGACGAGGAAGGGGGAGATTGCTACTAATGTACTGGCCGTTTGTTCTCAGAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATCGGACTCAAGGGTACTTCGTGATGCAGTCTCACGTCCTTCGGGACTAAAGGTTCCCAGGGGCTACTACTACCTCTGTGATGCCGGATATCCTAACGCGGATGGATTCCTAGCACCATATCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCGTCGGCACGAAATGTCATAGAAAGAGCCTTCGGACTGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCTTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGCTGCTACCTTCATAACCTAATAACACGGGAGATGGGACAGGATCCTTCGATGGAGGCCGCTCATACGGGGGAGCAAGATTCTAACGATATGGGAACAGAGAACATCACGTTCGTTGAATCCACCACTGCATGGAGTTCCTGGAGGGATGAATTGGCGAATCGAATGTTCGCTGAATGGAACAACAACTGA

mRNA sequence

ATGTTGTTATCTTGTCTTCCACTGGAGGACAACCTAACTTCAAGAAAATACTCGACCACTGAAAGTTTATCACTCGTCTGTTCGCAGAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGTAGATCGCCCCAGACATCGGACGAGGAAGGGGGAGATTGCTACTAATGTACTGGCCGTTTGTTCTCAGAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATCGGACTCAAGGGTACTTCGTGATGCAGTCTCACGTCCTTCGGGACTAAAGGTTCCCAGGGGCTACTACTACCTCTGTGATGCCGGATATCCTAACGCGGATGGATTCCTAGCACCATATCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCGTCGGCACGAAATGTCATAGAAAGAGCCTTCGGACTGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCTTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGCTGCTACCTTCATAACCTAATAACACGGGAGATGGGACAGGATCCTTCGATGGAGGCCGCTCATACGGGGGAGCAAGATTCTAACGATATGGGAACAGAGAACATCACGTTCGTTGAATCCACCACTGCATGGAGTTCCTGGAGGGATGAATTGGCGAATCGAATGTTCGCTGAATGGAACAACAACTGA

Coding sequence (CDS)

ATGTTGTTATCTTGTCTTCCACTGGAGGACAACCTAACTTCAAGAAAATACTCGACCACTGAAAGTTTATCACTCGTCTGTTCGCAGAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGTAGATCGCCCCAGACATCGGACGAGGAAGGGGGAGATTGCTACTAATGTACTGGCCGTTTGTTCTCAGAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATCGGACTCAAGGGTACTTCGTGATGCAGTCTCACGTCCTTCGGGACTAAAGGTTCCCAGGGGCTACTACTACCTCTGTGATGCCGGATATCCTAACGCGGATGGATTCCTAGCACCATATCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCGTCGGCACGAAATGTCATAGAAAGAGCCTTCGGACTGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCTTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGCTGCTACCTTCATAACCTAATAACACGGGAGATGGGACAGGATCCTTCGATGGAGGCCGCTCATACGGGGGAGCAAGATTCTAACGATATGGGAACAGAGAACATCACGTTCGTTGAATCCACCACTGCATGGAGTTCCTGGAGGGATGAATTGGCGAATCGAATGTTCGCTGAATGGAACAACAACTGA

Protein sequence

MLLSCLPLEDNLTSRKYSTTESLSLVCSQNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRDAVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHTGEQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNNN

Homology

[Close]

BLAST of Lag0038294 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 4.7e-97
Identity = 168/223 (75.34%), Postives = 186/223 (83.41%), Query Frame = 0


Query: 29  QNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSR 88
           Q CLGALDGTHIKVNVS  DRPR+R+RKG+I TNVL VC QNGEFIFV PGWEGSASDSR
Sbjct: 92  QKCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVLGVCLQNGEFIFVMPGWEGSASDSR 151

Query: 89  VLRDAVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFN 148
           VLRDAVSR +GLKVP+GYYYLCDAGYPNA+GFLAPYR  RYHLTEWRGGNPP  PKELFN
Sbjct: 152 VLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLTEWRGGNPPKCPKELFN 211

Query: 149 MRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSME 208
           MRHS ARNVIERAFG L  RW IL+G+SYY VD+Q K ITACC LHNLI REMG + + +
Sbjct: 212 MRHSFARNVIERAFGSLNCRWTILQGRSYYLVDIQCKIITACCLLHNLIHREMGSEATFK 271

Query: 209 AAHTGEQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
             H GE DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 272 EPHLGEGDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 314

[Close]

BLAST of Lag0038294 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 2.2e-94
Identity = 163/218 (74.77%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 34  ALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRDA 93
           ALDGTHIKVNVS  D PR+R+RK +I TNVL +CSQNGEFIFV PGWEGSASDSRVLRD 
Sbjct: 110 ALDGTHIKVNVSMSDHPRYRSRKSDITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDV 169

Query: 94  VSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHSS 153
           VSRP GLKVP+GYYYLCDA Y N +GFLAPYR  RYHL EWRGGNPP  PKELFNMRHSS
Sbjct: 170 VSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRYHLIEWRGGNPPKCPKELFNMRHSS 229

Query: 154 ARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHTG 213
           ARNVIERAFG LK RWAILRG+SYYPVD+Q K ITACC LHNLI REM  + + E  H G
Sbjct: 230 ARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLHNLIHREMSSEATFEEPHLG 289

Query: 214 EQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
           E DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 290 EDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 327

[Close]

BLAST of Lag0038294 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 2.2e-94
Identity = 163/218 (74.77%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 34  ALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRDA 93
           ALDGTHIKVNVS  D PR+R+RK +I TNVL +CSQNGEFIFV PGWEGSASDSRVLRD 
Sbjct: 88  ALDGTHIKVNVSMSDHPRYRSRKSDITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDV 147

Query: 94  VSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHSS 153
           VSRP GLKVP+GYYYLCDA Y N +GFLAPYR  RYHL EWRGGNPP  PKELFNMRHSS
Sbjct: 148 VSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRYHLIEWRGGNPPKCPKELFNMRHSS 207

Query: 154 ARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHTG 213
           ARNVIERAFG LK RWAILRG+SYYPVD+Q K ITACC LHNLI REM  + + E  H G
Sbjct: 208 ARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLHNLIHREMSSEATFEEPHLG 267

Query: 214 EQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
           E DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 268 EDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 305

[Close]

BLAST of Lag0038294 vs. NCBI nr
Match: KAA0049607.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.9e-90
Identity = 159/219 (72.60%), Postives = 176/219 (80.37%), Query Frame = 0


Query: 33  GALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRD 92
           GALDGTHIKVNVS  DR R+R+RKG+I TNVL VCSQNGEFIFV P WEGS SDSRVLRD
Sbjct: 4   GALDGTHIKVNVSMSDRLRYRSRKGDITTNVLGVCSQNGEFIFVMPRWEGSVSDSRVLRD 63

Query: 93  AVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHS 152
           AVSRP GLKVP+GYYYLC+A YPNA+GFLAPYR   YHL EWRGGNPP   KELFNMRHS
Sbjct: 64  AVSRPIGLKVPKGYYYLCEASYPNAEGFLAPYRGQCYHLIEWRGGNPPKCSKELFNMRHS 123

Query: 153 SARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHT 212
           S RN+IERAFG LK  WAILRG+SYY VD+Q K IT CC LHNLI REMG + + E  H 
Sbjct: 124 SFRNIIERAFGSLKSWWAILRGRSYYLVDIQCKIITTCCLLHNLIHREMGSEATFEEPHL 183

Query: 213 GEQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
            E DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 184 SEGDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 222

[Close]

BLAST of Lag0038294 vs. NCBI nr
Match: TYK05758.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 6.3e-86
Identity = 152/201 (75.62%), Postives = 166/201 (82.59%), Query Frame = 0


Query: 29  QNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSR 88
           QNCLGALDGTHIKVNVS  DRPR+R+RKG+I TNVL VCSQNGEFIFV PGWE S SDSR
Sbjct: 39  QNCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVLGVCSQNGEFIFVMPGWEESTSDSR 98

Query: 89  VLRDAVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFN 148
           VL+DAVS+PSGLK P+GYYYLCD GY NA+GFLAPYR   YHLTEWRGGNPP  PKELFN
Sbjct: 99  VLKDAVSQPSGLKAPKGYYYLCDTGYLNAEGFLAPYRGQHYHLTEWRGGNPPKWPKELFN 158

Query: 149 MRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSME 208
           MRHS ARNVIERAFG LK RWAILRG+SYYPVD+Q K ITACC LH LI REM  + + E
Sbjct: 159 MRHSYARNVIERAFGSLKDRWAILRGRSYYPVDIQCKIITACCLLHTLIHREMDSEATFE 218

Query: 209 AAHTGEQDSNDMGTENITFVE 230
             H GE DS++M  EN+  VE
Sbjct: 219 EPHLGEDDSSEMNIENVNSVE 239

[Close]

BLAST of Lag0038294 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.3e-97
Identity = 168/223 (75.34%), Postives = 186/223 (83.41%), Query Frame = 0


Query: 29  QNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSR 88
           Q CLGALDGTHIKVNVS  DRPR+R+RKG+I TNVL VC QNGEFIFV PGWEGSASDSR
Sbjct: 92  QKCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVLGVCLQNGEFIFVMPGWEGSASDSR 151

Query: 89  VLRDAVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFN 148
           VLRDAVSR +GLKVP+GYYYLCDAGYPNA+GFLAPYR  RYHLTEWRGGNPP  PKELFN
Sbjct: 152 VLRDAVSRLTGLKVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLTEWRGGNPPKCPKELFN 211

Query: 149 MRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSME 208
           MRHS ARNVIERAFG L  RW IL+G+SYY VD+Q K ITACC LHNLI REMG + + +
Sbjct: 212 MRHSFARNVIERAFGSLNCRWTILQGRSYYLVDIQCKIITACCLLHNLIHREMGSEATFK 271

Query: 209 AAHTGEQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
             H GE DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 272 EPHLGEGDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 314

[Close]

BLAST of Lag0038294 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.1e-94
Identity = 163/218 (74.77%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 34  ALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRDA 93
           ALDGTHIKVNVS  D PR+R+RK +I TNVL +CSQNGEFIFV PGWEGSASDSRVLRD 
Sbjct: 110 ALDGTHIKVNVSMSDHPRYRSRKSDITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDV 169

Query: 94  VSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHSS 153
           VSRP GLKVP+GYYYLCDA Y N +GFLAPYR  RYHL EWRGGNPP  PKELFNMRHSS
Sbjct: 170 VSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRYHLIEWRGGNPPKCPKELFNMRHSS 229

Query: 154 ARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHTG 213
           ARNVIERAFG LK RWAILRG+SYYPVD+Q K ITACC LHNLI REM  + + E  H G
Sbjct: 230 ARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLHNLIHREMSSEATFEEPHLG 289

Query: 214 EQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
           E DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 290 EDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 327

[Close]

BLAST of Lag0038294 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.1e-94
Identity = 163/218 (74.77%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 34  ALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRDA 93
           ALDGTHIKVNVS  D PR+R+RK +I TNVL +CSQNGEFIFV PGWEGSASDSRVLRD 
Sbjct: 88  ALDGTHIKVNVSMSDHPRYRSRKSDITTNVLGLCSQNGEFIFVMPGWEGSASDSRVLRDV 147

Query: 94  VSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHSS 153
           VSRP GLKVP+GYYYLCDA Y N +GFLAPYR  RYHL EWRGGNPP  PKELFNMRHSS
Sbjct: 148 VSRPIGLKVPKGYYYLCDASYLNVEGFLAPYRGQRYHLIEWRGGNPPKCPKELFNMRHSS 207

Query: 154 ARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHTG 213
           ARNVIERAFG LK RWAILRG+SYYPVD+Q K ITACC LHNLI REM  + + E  H G
Sbjct: 208 ARNVIERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLHNLIHREMSSEATFEEPHLG 267

Query: 214 EQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
           E DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 268 EDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 305

[Close]

BLAST of Lag0038294 vs. ExPASy TrEMBL
Match: A0A5A7U5I3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00600 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.2e-91
Identity = 159/219 (72.60%), Postives = 176/219 (80.37%), Query Frame = 0


Query: 33  GALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRD 92
           GALDGTHIKVNVS  DR R+R+RKG+I TNVL VCSQNGEFIFV P WEGS SDSRVLRD
Sbjct: 4   GALDGTHIKVNVSMSDRLRYRSRKGDITTNVLGVCSQNGEFIFVMPRWEGSVSDSRVLRD 63

Query: 93  AVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFNMRHS 152
           AVSRP GLKVP+GYYYLC+A YPNA+GFLAPYR   YHL EWRGGNPP   KELFNMRHS
Sbjct: 64  AVSRPIGLKVPKGYYYLCEASYPNAEGFLAPYRGQCYHLIEWRGGNPPKCSKELFNMRHS 123

Query: 153 SARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSMEAAHT 212
           S RN+IERAFG LK  WAILRG+SYY VD+Q K IT CC LHNLI REMG + + E  H 
Sbjct: 124 SFRNIIERAFGSLKSWWAILRGRSYYLVDIQCKIITTCCLLHNLIHREMGSEATFEEPHL 183

Query: 213 GEQDSNDMGTENITFVESTTAWSSWRDELANRMFAEWNN 252
            E DS++M  ENI FVE+T  W+ WRD LAN+MF +WNN
Sbjct: 184 SEGDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNN 222

[Close]

BLAST of Lag0038294 vs. ExPASy TrEMBL
Match: A0A5D3C3H1 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002470 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.1e-86
Identity = 152/201 (75.62%), Postives = 166/201 (82.59%), Query Frame = 0


Query: 29  QNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSR 88
           QNCLGALDGTHIKVNVS  DRPR+R+RKG+I TNVL VCSQNGEFIFV PGWE S SDSR
Sbjct: 39  QNCLGALDGTHIKVNVSMSDRPRYRSRKGDITTNVLGVCSQNGEFIFVMPGWEESTSDSR 98

Query: 89  VLRDAVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFN 148
           VL+DAVS+PSGLK P+GYYYLCD GY NA+GFLAPYR   YHLTEWRGGNPP  PKELFN
Sbjct: 99  VLKDAVSQPSGLKAPKGYYYLCDTGYLNAEGFLAPYRGQHYHLTEWRGGNPPKWPKELFN 158

Query: 149 MRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPSME 208
           MRHS ARNVIERAFG LK RWAILRG+SYYPVD+Q K ITACC LH LI REM  + + E
Sbjct: 159 MRHSYARNVIERAFGSLKDRWAILRGRSYYPVDIQCKIITACCLLHTLIHREMDSEATFE 218

Query: 209 AAHTGEQDSNDMGTENITFVE 230
             H GE DS++M  EN+  VE
Sbjct: 219 EPHLGEDDSSEMNIENVNSVE 239

[Close]

BLAST of Lag0038294 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 9.6e-32
Identity = 71/176 (40.34%), Postives = 93/176 (52.84%), Query Frame = 0


Query: 29  QNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSR 88
           ++C+G +D  HI V V   ++   R   G +  NVLA  S +  F +V  GWEGSASD +
Sbjct: 141 KDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQ 200

Query: 89  VLRDAVSRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPPTTPKELFN 148
           VL  A++R + L+VP+G YY+ D  YPN  GF+APY             N     KE+FN
Sbjct: 201 VLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV--------STNSREEAKEMFN 260

Query: 149 MRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLITREMGQD 205
            RH      I R FG LK R+ IL     YP+  QVK + A C LHN +  E   D
Sbjct: 261 ERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYVRLEKPDD 308

[Close]

BLAST of Lag0038294 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-28
Identity = 78/215 (36.28%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 51  RHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLRDAVSRPSGLKVPRGYYYLC 110
           R  +RK  +  +  A       FI+V  GWEGSA DSRVL DA+ +          +YL 
Sbjct: 3   RDTSRKANMEMSSFAWGYATWIFIYVLSGWEGSAHDSRVLSDALRK----------FYLV 62

Query: 111 DAGYPNADGFLAPYRSTRYHLTEWRG-GNPPTTPKELFNMRHSSARNVIERAFGLLKGRW 170
           D G+ N   FLAP+R  RYHL E+ G    P TP ELFN+RH S RNVIER FG+ K R+
Sbjct: 63  DCGFANRLNFLAPFRGVRYHLQEFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRF 122

Query: 171 AILRGKSYYPVDVQVKTITACCYLHNLITREMGQDPS---MEAAHTGE---QDSNDMGTE 230
           AI +    +    Q   +  C  LHN + +E   D +    E  + G+    + N M T 
Sbjct: 123 AIFKSAPPFSYKKQAGLVLTCAALHNFLRKECRSDEADFPDEVGNEGDVVNNEGNAMNTN 182

Query: 231 NITFVESTTA-------WSSWRDELANRMFAEWNN 252
            I   E   A        + WR  +A  M+ +  N
Sbjct: 183 EIDNEEPLEAQKQDRENTNMWRKSMAEDMWKDATN 207

[Close]

BLAST of Lag0038294 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-22
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 32  LGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSRVLR 91
           +GA+DGTH+ V V    +  +  R    + N++A+C     F +++ G  GS  D+ VL+
Sbjct: 177 VGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQ 236

Query: 92  DAVSRPSGLKVPRG-YYYLCDAGYPNADGFLAPYRST-----RYHLTEWRGGNPPTTPKE 151
            A    S   +P    YYL D+GYPN  G LAPYRS+     RYH++++  G  P    E
Sbjct: 237 IAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPRPRNKHE 296

Query: 152 LFNMRHSSARNVIERAFGLLKGR 169
           LFN  H+S R+VIER F + K +
Sbjct: 297 LFNQCHTSLRSVIERTFRIWKNK 319

[Close]

BLAST of Lag0038294 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 5.6e-16
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 29  QNCLGALDGTHIKVNVSAVDRPRHRTRKGEIATNVLAVCSQNGEFIFVFPGWEGSASDSR 88
           ++C+GA+D THI   VS    P  R RKG+I+ N+LA C+ + EF++V  GWEGSA DS+
Sbjct: 23  KDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSK 82

Query: 89  VLRDAVSRPSG-LKVP---RGYYYLCDAGYPNADGFLAPYRSTRYHLTEWR 136
           VL DA++R S  L VP        + +    N D  L      R +  +WR
Sbjct: 83  VLNDALTRNSNRLPVPEEDESAEEVVEEVNDNNDEVLTTQDQQREYANQWR 133

[Close]

BLAST of Lag0038294 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-15
Identity = 57/188 (30.32%), Postives = 91/188 (48.40%), Query Frame = 0


Query: 30  NCLGALDGTHI-----KVNVSAVDRPRH--RTRKGEIATNVLAVCSQNGEFIFVFPGWEG 89
           N +G++  THI     K++V++    RH  R +K   +  + AV +  G F  +  GW G
Sbjct: 284 NVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLCIGWPG 343

Query: 90  SASDSRVLRDAV--SRPSGLKVPRGYYYLCDAGYPNADGFLAPYRSTRYHLTEWRGGNPP 149
           S  D +VL  ++   R +   + +G +     G+P  D  L PY  T+ +LT W      
Sbjct: 344 SMPDDKVLEKSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPY--TQQNLT-W------ 403

Query: 150 TTPKELFNMRHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQVKTITACCYLHNLI-TR 208
              +  FN + S  + V + AFG LKGRWA L+ ++   +      + ACC LHN+   R
Sbjct: 404 --TQHAFNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNICEMR 460

The following BLAST results are available for this feature:

BLAST of Lag0038294 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065306.1	4.7e-97	75.34	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048191.1	2.2e-94	74.77	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08067.1	2.2e-94	74.77	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049607.1	1.9e-90	72.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05758.1	6.3e-86	75.62	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0038294 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0038294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG45	2.3e-97	75.34	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U3R2	1.1e-94	74.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7X6	1.1e-94	74.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U5I3	9.2e-91	72.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C3H1	3.1e-86	75.62	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Lag0038294 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	9.6e-32	40.34	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G35695.1	2.2e-28	36.28	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	4.0e-22	38.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	5.6e-16	40.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G12010.1	1.3e-15	30.32	unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 35..195 e-value: 3.1E-28 score: 98.4
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 23..248
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 23..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038294.1	Lag0038294.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding