Lag0038293 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038293
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon protein
Location	chr2: 14848959 .. 14849776 (+)
RNA-Seq Expression	Lag0038293
Synteny	Lag0038293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGGAACAAATTCTACGTCGTTTTCGTCGGGCGCATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGTTTTTTCTTGGTGTAGCTGTCGTCATATTAGGTAGTCTGATGTAGTATGGACATTTATTTTCAGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACACCGAATCAGGCAACTAAACTTCTTCCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACGCATGGATCGACGAACATTCACGATCCTGTGTACCCTTTTACGGACCACTGGTGGACTACAAGCCACTAGCTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATTGTTGCACACGACGTTAAGAATCGTGTGATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACATTTCAATGCCGTACTGGATGCAGTACTTTGA

mRNA sequence

ATGGGAGGGAACAAATTCTACGTCGTTTTCGTCGGGCGCATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACACCGAATCAGGCAACTAAACTTCTTCCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACGCATGGATCGACGAACATTCACGATCCTGTGTACCCTTTTACGGACCACTGGTGGACTACAAGCCACTAGCTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATTGTTGCACACGACGTTAAGAATCGTGTGATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACATTTCAATGCCGTACTGGATGCAGTACTTTGA

Coding sequence (CDS)

ATGGGAGGGAACAAATTCTACGTCGTTTTCGTCGGGCGCATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTTCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACACCGAATCAGGCAACTAAACTTCTTCCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACGCATGGATCGACGAACATTCACGATCCTGTGTACCCTTTTACGGACCACTGGTGGACTACAAGCCACTAGCTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATTGTTGCACACGACGTTAAGAATCGTGTGATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACATTTCAATGCCGTACTGGATGCAGTACTTTGA

Protein sequence

MGGNKFYVVFVGRMPGVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVSTCSGTYHVLLFIVGIVRRSYRMDAQDNEIQELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNAVLDAVL

Homology

[Close]

BLAST of Lag0038293 vs. NCBI nr
Match: KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-34
Identity = 83/134 (61.94%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 117 QELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACR 176
           Q LI +LT   + Q Q + T L +L +       +P   RHRIR+L +FR+IHE DL CR
Sbjct: 4   QTLIGVLTAFTSAQRQILLT-LELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCR 63

Query: 177 ENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGE 236
           ++TRMDRRTF ILC LLR   GL +T  VDVEEMVAMFLH++AHDVKNRVI+R+FVRSGE
Sbjct: 64  QSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE 123

Query: 237 TVSRHFNAVLDAVL 251
           TVSRHFN VL AVL
Sbjct: 124 TVSRHFNIVLLAVL 136

[Close]

BLAST of Lag0038293 vs. NCBI nr
Match: KAA0043030.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-33
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 117 QELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACR 176
           Q L+  LT     Q Q +  +  +++       ++P   RHRIRQL +FR+IHE DL CR
Sbjct: 4   QTLLGALTAFTMAQRQMLLMLEALMNDNKRLP-QTPYDTRHRIRQLAYFRMIHESDLVCR 63

Query: 177 ENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGE 236
           ++TRMDRRTFTILC LLRT  GL +T  VDVEEMVAMFLH++AHDVKNRVI+R+FVRSGE
Sbjct: 64  KSTRMDRRTFTILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE 123

Query: 237 TVSRHFNAVL 247
           TVSRHFN VL
Sbjct: 124 TVSRHFNIVL 132

[Close]

BLAST of Lag0038293 vs. NCBI nr
Match: KAA0035564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-33
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 151 SPTHVRHRIRQLNFFRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEM 210
           +P   RHRIR+L +FR+IHE DL CR++TRMDRRTFTILC LLR   GL +T  VDVEEM
Sbjct: 10  TPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFTILCHLLRNVAGLSSTEIVDVEEM 69

Query: 211 VAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNAVLDAVL 251
           VAMFLH++AHDVKNRVI+R+FVRSGETVSRHFN VL AVL
Sbjct: 70  VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVL 109

[Close]

BLAST of Lag0038293 vs. NCBI nr
Match: KAA0036563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 6.2e-33
Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 117 QELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACR 176
           Q ++ I T+    Q Q + T+  +++      + +P+  RHRIRQL +FR+IHE DL CR
Sbjct: 4   QTVLGIPTVFTLAQRQILLTLELLMNDNKRITY-TPSDTRHRIRQLAYFRMIHESDLVCR 63

Query: 177 ENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGE 236
           ++TRMDRRTF ILC LLRT   L +T  VDVEEMVAMFLH++AHDVKNRVI+R+FVRSGE
Sbjct: 64  QSTRMDRRTFAILCHLLRTVSSLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE 123

Query: 237 TVSRHFNAVLDAVL 251
           TVS HFN VL AV+
Sbjct: 124 TVSLHFNLVLLAVV 136

[Close]

BLAST of Lag0038293 vs. NCBI nr
Match: KAA0045009.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-32
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 151 SPTHVRHRIRQLNFFRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEM 210
           +P   RHRIR+L +FR+IHE DL CR++TRMDRRTF ILC LLR   GL +T  VDVEEM
Sbjct: 10  TPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEM 69

Query: 211 VAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNAVLDAVL 251
           VAMFLH++AHDVKNRVI+R+FVRSGETVSRHFN VL AVL
Sbjct: 70  VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVL 109

[Close]

BLAST of Lag0038293 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-08
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 6   FYVVFVGRMPGVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGD 65
           FYVV VGR  G+Y TW +C+ QV GF GAVY+S+ TL +A A   A+        S  GD
Sbjct: 156 FYVVAVGRQRGIYSTWDQCSEQVKGFSGAVYKSFRTLSEARAYLTAHPARSGLEKSDRGD 215

[Close]

BLAST of Lag0038293 vs. ExPASy Swiss-Prot
Match: Q9KEI9 (Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rnhA PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-06
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  MGGNKFYVVFVGRMPGVYMTWYECARQVHGFRGAVYQSYETLDDAEATY 50
          M  +K+YVV+ GR PG+Y +W  C  QV G+ GA ++SY + ++AEA +
Sbjct: 1  MAKSKYYVVWNGRKPGIYTSWSACEAQVKGYTGAKFKSYPSKEEAEAAF 49

[Close]

BLAST of Lag0038293 vs. ExPASy Swiss-Prot
Match: Q04740 (Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RNH1 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 8.2e-04
Identity = 18/42 (42.86%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 6  FYVVFVGRMPGVYMTWYECARQVHGFRGAVYQSYETLDDAEA 48
          FY V  GR  G+Y TW EC  QV G+ GA+Y+ + + + A++
Sbjct: 7  FYAVRKGRETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKS 48

[Close]

BLAST of Lag0038293 vs. ExPASy TrEMBL
Match: A0A5A7UUT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00380 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-35
Identity = 83/134 (61.94%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 117 QELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACR 176
           Q LI +LT   + Q Q + T L +L +       +P   RHRIR+L +FR+IHE DL CR
Sbjct: 4   QTLIGVLTAFTSAQRQILLT-LELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCR 63

Query: 177 ENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGE 236
           ++TRMDRRTF ILC LLR   GL +T  VDVEEMVAMFLH++AHDVKNRVI+R+FVRSGE
Sbjct: 64  QSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE 123

Query: 237 TVSRHFNAVLDAVL 251
           TVSRHFN VL AVL
Sbjct: 124 TVSRHFNIVLLAVL 136

[Close]

BLAST of Lag0038293 vs. ExPASy TrEMBL
Match: A0A5A7TI78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001100 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.0e-34
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 117 QELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACR 176
           Q L+  LT     Q Q +  +  +++       ++P   RHRIRQL +FR+IHE DL CR
Sbjct: 4   QTLLGALTAFTMAQRQMLLMLEALMNDNKRLP-QTPYDTRHRIRQLAYFRMIHESDLVCR 63

Query: 177 ENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGE 236
           ++TRMDRRTFTILC LLRT  GL +T  VDVEEMVAMFLH++AHDVKNRVI+R+FVRSGE
Sbjct: 64  KSTRMDRRTFTILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE 123

Query: 237 TVSRHFNAVL 247
           TVSRHFN VL
Sbjct: 124 TVSRHFNIVL 132

[Close]

BLAST of Lag0038293 vs. ExPASy TrEMBL
Match: A0A5A7SW81 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002340 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 151 SPTHVRHRIRQLNFFRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEM 210
           +P   RHRIR+L +FR+IHE DL CR++TRMDRRTFTILC LLR   GL +T  VDVEEM
Sbjct: 10  TPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFTILCHLLRNVAGLSSTEIVDVEEM 69

Query: 211 VAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNAVLDAVL 251
           VAMFLH++AHDVKNRVI+R+FVRSGETVSRHFN VL AVL
Sbjct: 70  VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVL 109

[Close]

BLAST of Lag0038293 vs. ExPASy TrEMBL
Match: A0A5A7T0Z8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00710 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-33
Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 117 QELIAILTIICATQYQFIATVLGILHSGYSWEFRSPTHVRHRIRQLNFFRLIHEDDLACR 176
           Q ++ I T+    Q Q + T+  +++      + +P+  RHRIRQL +FR+IHE DL CR
Sbjct: 4   QTVLGIPTVFTLAQRQILLTLELLMNDNKRITY-TPSDTRHRIRQLAYFRMIHESDLVCR 63

Query: 177 ENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGE 236
           ++TRMDRRTF ILC LLRT   L +T  VDVEEMVAMFLH++AHDVKNRVI+R+FVRSGE
Sbjct: 64  QSTRMDRRTFAILCHLLRTVSSLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGE 123

Query: 237 TVSRHFNAVLDAVL 251
           TVS HFN VL AV+
Sbjct: 124 TVSLHFNLVLLAVV 136

[Close]

BLAST of Lag0038293 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.1e-33
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 151 SPTHVRHRIRQLNFFRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEM 210
           +P   RHRIR+L +FR+IHE DL CR++TRMDRRTF ILC LLR   GL +T  VDVEEM
Sbjct: 10  TPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEM 69

Query: 211 VAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNAVLDAVL 251
           VAMFLH++AHDVKNRVI+R+FVRSGETVSRHFN VL AVL
Sbjct: 70  VAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVL 109

[Close]

BLAST of Lag0038293 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-14
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 165 FRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKN 224
           +++++  +  C EN RMD+  F  LC LL+T G L+ T+ + +E  +A+FL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 225 RVIRRQFVRSGETVSRHFNAVLDAVL 251
           R ++  F  SGET+SRHFN VL+AV+
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVI 117

[Close]

BLAST of Lag0038293 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-11
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 150 RSPTHVRHRIRQLNFFRLIHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEE 209
           R+P  +   +   N +R + +D  AC +  RM    FT LC +L+T   LQ T  + +EE
Sbjct: 41  RAPVQIDRGLGWRNIWRRLQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEE 100

Query: 210 MVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNAVLDA 249
            VAMFL I  H+   R +  +F R+ ETV R F  VL A
Sbjct: 101 SVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTA 139

[Close]

BLAST of Lag0038293 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-07
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 168 IHEDDLACRENTRMDRRTFTILCTLLRTTGGLQATSYVDVEEMVAMFLHIVAHDVKNRVI 227
           I+ ++++C+   RM    FT LC +L    GLQ+++ + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 228 RRQFVRSGETVSRHFNAVLDAV 250
             +F  + ET+ R F+ VL A+
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAM 98

The following BLAST results are available for this feature:

BLAST of Lag0038293 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058874.1	1.1e-34	61.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043030.1	1.2e-33	60.77	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035564.1	2.8e-33	74.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036563.1	6.2e-33	58.21	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045009.1	1.1e-32	73.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0038293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07762	5.5e-08	48.33	Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1	[more]
Q9KEI9	2.3e-06	44.90	Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 73...	[more]
Q04740	8.2e-04	42.86	Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55929...	[more]

BLAST of Lag0038293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUT3	5.5e-35	61.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TI78	6.0e-34	60.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SW81	1.3e-33	74.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T0Z8	3.0e-33	58.21	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	5.1e-33	73.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lag0038293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.8e-14	41.86	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.4e-11	38.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	4.8e-07	35.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011320	Ribonuclease H1, N-terminal	PFAM	PF01693	Cauli_VI	coord: 5..47 e-value: 2.2E-16 score: 59.8
IPR037056	Ribonuclease H1, N-terminal domain superfamily	GENE3D	3.40.970.10		coord: 2..51 e-value: 4.0E-17 score: 64.1
None	No IPR available	PIRSR	PIRSR037839-1	PIRSR037839-1	coord: 1..58 e-value: 8.4E-14 score: 49.6
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 120..250
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 120..250
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 4..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038293.1	Lag0038293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding