Lag0038287 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038287
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	pre-rRNA-processing protein TSR1 homolog
Location	chr2: 14812069 .. 14814021 (-)
RNA-Seq Expression	Lag0038287
Synteny	Lag0038287

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGGAGTAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAACATAAAACATCTTTAAAAGGTGCATATTTTCTTTCTGGAAGCCTAGTTTTTGCTTTCTTCTTTTTAAGTTAATTTTTGGTTCATGTAGGGACCTGGTTTAATTTTCTCAATAACAAAATACTTAGGGTTATGTAGCTATTGGTTTCTAATTTGAGTTTTGGGCAATTAGATAGAAGCAAAGTTACGAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGCAGTAAAATGGTACTTGATGCCCAATCTTTTTCTACCTATTCTTCCTTTCCCTCGGGCATATTTGGCATGCCTTATTGTCATTGGTGCTCCTTTATTTTGATCACTGAATTTGCTTGTTGTGCAGATTCGAGAGCAGAAAAGGGTTGCTCTTTTACAGGACAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTGAGTAGTTAGAATATCAATGCTTTCTCTCTTATTTACTCATTCCCTGCTTCGATCAATTTTCTTATTCTATTTGTTAATGGTTATGCTCACAGGTTCTTTTTGGGCTTTCCGCCTCAGTAGACCTGAATCCACTTGCTGAGGATCTTTTGTCTCTATTAGCTCCTGGAACTTTGTCATCCACAGTTGCTTCTTCAGAGTACAAGCTACGGGCAACAGTAAGTTGTATCTATGTGATTCTTCTTCGCATCCACAGTTGCTTTATATATTTATATATATGTAATTTTCTGTGTATTTATGTTTGCTTTCATTGTGCTACTTTTTTATGCTCCAGGTACTGAAAGCACCCTATGGTGATTTGCAATCATGTATGGAGATGGCTAAGGTTCTAACTTCTCATGCAATTGTATCTTCTGTTGTTTCTTCACTCATCAAGTTTTAGTTTTGATCTCTAGTTTTTTAATTGGCCATGTACCTGTTAATTTGTAGGTAGCCGACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTATTCGAGTATGTTTATCACGTTATTTCCTTTTTGAGACTACTAATCTAAAAGGAGAAGAATTTTTGTGTGTATAGTTAAAGCTACTTTTCTTTTCTGGCAGGACCTACCCGCTGATATAAAGAAAAGAAACGATTATAAAAAAATTTGTATTTCTAGCATTACTTCTGAATTTCCCGAAGATTGCAAGTTTTATCCTGCAGATACTAAAGATGAGTTACACAAGGTAAACAAGTGTAGGTTGTTTGTATAGGTTACTCATTTACATGGCTTTTTATGCTTATTTCAGTTTTCATGATTTATATTTGCAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCACTGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAGAAGGTTCTTAAATATATGTACTTTGATACATTTCATAGATTTTGACAACTATTTTCTTTTTACTCTGTAAGGTACGTCTGTTTTTTAGATATTATTTTGCTAATTCTATGGTTTTCCCTTAGGTTGATATGGTAGCTGATAATTGTACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTACGTGCTCGAAGTCTCTCTGTGAATCAGCTGGTAGAGTCCTCTGTTTTGCCATGTTTCTTGCTTCAGGTAGGTTGATATGCTGTTCATACTTGCCTTTTCTTTCACCAGGTTCATGTCGCTGGAGCAGGAGATTTCCAGCTTCGCAAAATTGAAGTTCTCAAGGATCCAGTTCCATTGAATCCAAGAATAGAACAAGATGCCATGGATACTCACGACGTGGAGGTAATGAACATAATCTTTGCACGAGTAGAGTGA

mRNA sequence

ATGGGAGGGAGTAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAACATAAAACATCTTTAAAAGATAGAAGCAAAGTTACGAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGCAGTAAAATGATTCGAGAGCAGAAAAGGGTTGCTCTTTTACAGGACAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTTCTTTTTGGGCTTTCCGCCTCAGTAGACCTGAATCCACTTGCTGAGGATCTTTTGTCTCTATTAGCTCCTGGAACTTTGTCATCCACAGTTGCTTCTTCAGAGTACAAGCTACGGGCAACAGTACTGAAAGCACCCTATGGTGATTTGCAATCATGTATGGAGATGGCTAAGGTAGCCGACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTATTCGAGACCTACCCGCTGATATAAAGAAAAGAAACGATTATAAAAAAATTTGTATTTCTAGCATTACTTCTGAATTTCCCGAAGATTGCAAGTTTTATCCTGCAGATACTAAAGATGAGTTACACAAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCACTGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAGAAGGTTGATATGGTAGCTGATAATTGTACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTACGTGCTCGAAGTCTCTCTGTGAATCAGCTGGTTCATGTCGCTGGAGCAGGAGATTTCCAGCTTCGCAAAATTGAAGTTCTCAAGGATCCAGTTCCATTGAATCCAAGAATAGAACAAGATGCCATGGATACTCACGACGTGGAGGTAATGAACATAATCTTTGCACGAGTAGAGTGA

Coding sequence (CDS)

ATGGGAGGGAGTAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAACATAAAACATCTTTAAAAGATAGAAGCAAAGTTACGAAGAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGCAGTAAAATGATTCGAGAGCAGAAAAGGGTTGCTCTTTTACAGGACAAAAGAGCATTAAGTGGATCAAAGAGTCCTCCCAGAGTCATAGTTCTTTTTGGGCTTTCCGCCTCAGTAGACCTGAATCCACTTGCTGAGGATCTTTTGTCTCTATTAGCTCCTGGAACTTTGTCATCCACAGTTGCTTCTTCAGAGTACAAGCTACGGGCAACAGTACTGAAAGCACCCTATGGTGATTTGCAATCATGTATGGAGATGGCTAAGGTAGCCGACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTATTCGAGACCTACCCGCTGATATAAAGAAAAGAAACGATTATAAAAAAATTTGTATTTCTAGCATTACTTCTGAATTTCCCGAAGATTGCAAGTTTTATCCTGCAGATACTAAAGATGAGTTACACAAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCACTGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAGAAGGTTGATATGGTAGCTGATAATTGTACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTACGTGCTCGAAGTCTCTCTGTGAATCAGCTGGTTCATGTCGCTGGAGCAGGAGATTTCCAGCTTCGCAAAATTGAAGTTCTCAAGGATCCAGTTCCATTGAATCCAAGAATAGAACAAGATGCCATGGATACTCACGACGTGGAGGTAATGAACATAATCTTTGCACGAGTAGAGTGA

Protein sequence

MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVLKDPVPLNPRIEQDAMDTHDVEVMNIIFARVE

Homology

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BLAST of Lag0038287 vs. NCBI nr
Match: XP_038875506.1 (pre-rRNA-processing protein TSR1 homolog [Benincasa hispida])

HSP 1 Score: 595.5 bits (1534), Expect = 2.8e-166
Identity = 307/326 (94.17%), Postives = 315/326 (96.63%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLL PG  SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLTPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLSVLRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVVSASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AVLIRDLP DIKKRNDYKK+CISSITSEFPEDCK+YPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVLIRDLPTDIKKRNDYKKMCISSITSEFPEDCKYYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTSGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCKIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR+EQDAMDT D EV+ ++
Sbjct: 301 KDPVPLNPRVEQDAMDTQDEEVVRLL 326

[Close]

BLAST of Lag0038287 vs. NCBI nr
Match: XP_023513549.1 (pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo] >XP_023513550.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo] >XP_023513551.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 595.5 bits (1534), Expect = 2.8e-166
Identity = 306/326 (93.87%), Postives = 316/326 (96.93%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGSRAQVNKPHKSRFSSKATRQQHKTS KDRSKVTKNNVAKGARAARLQR+KMIREQKR
Sbjct: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSFKDRSKVTKNNVAKGARAARLQRNKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLSLLAPG+ SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRASSGSKNPPRVIVLFGLSASVDLNPLAEDLLSLLAPGSSSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVTSASYYIEGSTSLYIDSFGSECLSLLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AV IRDLP DIKKRNDYKK+CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVFIRDLPTDIKKRNDYKKMCISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTSGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCKIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR+EQDAMDTHDVEV+ ++
Sbjct: 301 KDPVPLNPRMEQDAMDTHDVEVIQLL 326

[Close]

BLAST of Lag0038287 vs. NCBI nr
Match: XP_023004943.1 (pre-rRNA-processing protein TSR1 homolog [Cucurbita maxima] >XP_023004944.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita maxima])

HSP 1 Score: 594.0 bits (1530), Expect = 8.1e-166
Identity = 305/326 (93.56%), Postives = 316/326 (96.93%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGSR QVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQR+KMIREQKR
Sbjct: 1   MGGSRPQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRNKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLSLLAPG+ SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRASSGSKNPPRVIVLFGLSASVDLNPLAEDLLSLLAPGSSSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVTSASYYIEGSTSLYIDSFGSECLSLLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AV IRDLP DIKKRNDYKK+CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVFIRDLPTDIKKRNDYKKMCISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTSGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCRIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR+EQDAMDTHDVEV+ ++
Sbjct: 301 KDPVPLNPRMEQDAMDTHDVEVVQLL 326

[Close]

BLAST of Lag0038287 vs. NCBI nr
Match: KAG6592850.1 (Pre-rRNA-processing protein TSR1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 593.2 bits (1528), Expect = 1.4e-165
Identity = 304/326 (93.25%), Postives = 316/326 (96.93%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGSRAQVNKPHKSRFSSKATRQQHKTS KDR+KVTKNNVAKGARAARLQR+KMIREQKR
Sbjct: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSFKDRNKVTKNNVAKGARAARLQRNKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLSLLAPG+ SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRASSGSKNPPRVIVLFGLSASVDLNPLAEDLLSLLAPGSSSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVTSASYYIEGSTSLYIDSFGSECLSLLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AV IRDLP DIKKRNDYKK+CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVFIRDLPTDIKKRNDYKKMCISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTSGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCRIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR+EQDAMDTHDVEV+ ++
Sbjct: 301 KDPVPLNPRMEQDAMDTHDVEVVQLL 326

[Close]

BLAST of Lag0038287 vs. NCBI nr
Match: XP_023547507.1 (pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo] >XP_023547508.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 592.4 bits (1526), Expect = 2.4e-165
Identity = 305/326 (93.56%), Postives = 315/326 (96.63%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHKSRFSSKATRQQHKTSL DRSKVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLTDRSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRALSGSKSPPRVIVL GLSASVDLNPLAEDLLSLL+PG  SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRALSGSKSPPRVIVLLGLSASVDLNPLAEDLLSLLSPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYI+SFGSECLSVLRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVVSASYYIEGSTSLYINSFGSECLSVLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AVLIRDLP DIKKRNDYKK+CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVLIRDLPTDIKKRNDYKKMCISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIE+L
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCKIEIL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPRIEQD+MDT D EV+ ++
Sbjct: 301 KDPVPLNPRIEQDSMDTQDEEVVRLL 326

[Close]

BLAST of Lag0038287 vs. ExPASy Swiss-Prot
Match: Q5R434 (Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii OX=9601 GN=TSR1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-27
Identity = 103/321 (32.09%), Postives = 162/321 (50.47%), Query Frame = 0


Query: 3   GSRAQVNKPHK-SRFSSKATRQQH---KTSLKDRSKVTKNNVAKGARAARLQRSKMIREQ 62
           G+  Q NK HK  R   + + Q+    + +LK  SK  +  +   +R  +  R+  +R+Q
Sbjct: 7   GTLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKEL---SRVDQRHRASQLRKQ 66

Query: 63  KRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTL---------SS 122
           K+ A+L +KR L G   PP  +++  L + + L P A  LL     GT+         S 
Sbjct: 67  KKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISL-PEAMQLLQDRDTGTVHLNELGNTQSF 126

Query: 123 TVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECL 182
            +     K R     A  GDL   ++MAKVAD I F+      +EG      DS G  CL
Sbjct: 127 MLLCPRLKHRWFFTSARPGDLHIVLDMAKVADTILFLLDP---LEG-----WDSTGDYCL 186

Query: 183 SVLRSLGLPSTAVLIRDLPA-DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFM 242
           S L + GLP+  + ++ +    +KK+ D +K    ++   FP D K    DT+ E    +
Sbjct: 187 SCLFAQGLPTYTLAVQGISGLPLKKQIDARKKLSKAVEKRFPHD-KLLLLDTQQEAGMLL 246

Query: 243 WLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAG 302
                Q+     +R++R YL ++ VD VA        TL ++GY+R ++L+VN+L+H+ G
Sbjct: 247 RQLANQKQQHLAFRDRRAYLFARAVDFVASEENNLVGTLKISGYVRGQTLNVNRLLHIVG 306

Query: 303 AGDFQLRKIEVLKDPVPLNPR 310
            GDFQ+++I+   DP PLNPR
Sbjct: 307 HGDFQMKQIDAPGDPFPLNPR 314

[Close]

BLAST of Lag0038287 vs. ExPASy Swiss-Prot
Match: Q5XGY1 (Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis OX=8355 GN=tsr1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-26
Identity = 99/325 (30.46%), Postives = 159/325 (48.92%), Query Frame = 0


Query: 3   GSRAQVNKPHKS-RFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRV 62
           G+  Q NKPHKS R   +  + +          + K N     +  R  ++  IR Q++ 
Sbjct: 13  GAYKQQNKPHKSGRHRGRGAQDRENKGRVAAKILGKKNKKDLRKLDRRHKANQIRRQRKD 72

Query: 63  ALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLL-------------APGTLS 122
           A+L +KR+L     PP +++   L A      + +DL SL+               G L+
Sbjct: 73  AVLAEKRSLGTKDGPPHLVIAISLHA----RAVKDDLFSLVQNNEGDILHVNDQIKGLLA 132

Query: 123 STVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSEC 182
             +   + K R   ++A   DL S +++AKVAD + F+       EG      DS+G  C
Sbjct: 133 --LVCPKVKQRWCFIQANRDDLCSLLDLAKVADTLLFLLDPQ---EG-----WDSYGDYC 192

Query: 183 LSVLRSLGLPSTAVLIRDLP-ADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKF 242
           LS L + GLPS  + ++ +    IKKR D KK     I + F  D K +  DT+ E    
Sbjct: 193 LSCLFAQGLPSYVLAVQGMNYIPIKKRADIKKQLSKVIENRF-TDAKLFQLDTEQEAAVL 252

Query: 243 MWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVA 302
           +     Q+     +R++R Y+++Q+ D    + +    TL L+GY+R + L+VN+LVH+ 
Sbjct: 253 IRQISTQKQRHLAFRSRRSYMLAQRADFQPTDESGLVGTLKLSGYVRGQELNVNRLVHIV 312

Query: 303 GAGDFQLRKIEVLKDPVPLNPRIEQ 313
           G GDF + +I+   DP PLNPR+ +
Sbjct: 313 GHGDFHMSQIDAPPDPYPLNPRVHK 322

[Close]

BLAST of Lag0038287 vs. ExPASy Swiss-Prot
Match: Q2NL82 (Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens OX=9606 GN=TSR1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.5e-26
Identity = 103/321 (32.09%), Postives = 161/321 (50.16%), Query Frame = 0


Query: 3   GSRAQVNKPHK-SRFSSKATRQQH---KTSLKDRSKVTKNNVAKGARAARLQRSKMIREQ 62
           G   Q NK HK  R   + + Q+    + +LK  SK  +  +   +R  +  R+  +R+Q
Sbjct: 7   GPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKEL---SRVDQRHRASQLRKQ 66

Query: 63  KRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGT--LSSTVASSEY 122
           K+ A+L +KR L G   PP  +++  L + + L P A  LL     GT  L+    +  +
Sbjct: 67  KKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISL-PEAMQLLQDRDTGTVHLNELGNTQNF 126

Query: 123 KLRATVLK-------APYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECL 182
            L    LK       A  GDL   ++MAKVAD I F+      +EG      DS G  CL
Sbjct: 127 MLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDP---LEG-----WDSTGDYCL 186

Query: 183 SVLRSLGLPSTAVLIRDLPA-DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFM 242
           S L + GLP+  + ++ +    +KK+ D +K    ++   FP D K    DT+ E    +
Sbjct: 187 SCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHD-KLLLLDTQQEAGMLL 246

Query: 243 WLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAG 302
                Q+     +R++R YL +  VD V         TL ++GY+R ++L+VN+L+H+ G
Sbjct: 247 RQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVG 306

Query: 303 AGDFQLRKIEVLKDPVPLNPR 310
            GDFQ+++I+   DP PLNPR
Sbjct: 307 YGDFQMKQIDAPGDPFPLNPR 314

[Close]

BLAST of Lag0038287 vs. ExPASy Swiss-Prot
Match: Q5SWD9 (Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX=10090 GN=Tsr1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.5e-25
Identity = 102/319 (31.97%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 3   GSRAQVNKPHK-SRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRV 62
           G   Q NK HK  R     + Q+          + K    + +R  +  R+  +R+QKR 
Sbjct: 7   GPLKQQNKAHKGGRHHGGGSAQRDSKGRVGPKILCKKLKRQLSRIDQRHRASQLRKQKRE 66

Query: 63  ALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGT--LSSTVASSEYKLR 122
           ++L +KR L     PP  +++  L + + L P A  LL     GT  LS   ++  + L 
Sbjct: 67  SVLAEKRQLGSKDGPPHQVLVVPLHSRISL-PEAFKLLQNEDLGTVYLSERGSTQSFMLL 126

Query: 123 ATVLK-------APYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVL 182
              LK       A  GDL + ++MAKVAD I F+      +EG      DS G  CLS L
Sbjct: 127 CPSLKHRWFFTYARPGDLHTLLDMAKVADTILFLLDP---LEG-----WDSTGDYCLSCL 186

Query: 183 RSLGLPSTAVLIRDLPA-DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLF 242
            + GLP+  + ++ L     KK+ D +K     +   FPED K    DT+ E    +   
Sbjct: 187 FAQGLPTYTLAVQGLSGFPPKKQIDARKKLSKMVEKRFPED-KLLLLDTQQESGMLLRQL 246

Query: 243 KEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGD 302
             Q+     +R++R YL +   D V    +    TL ++GY+R R+L+VN L+H+ G GD
Sbjct: 247 ANQKQRHLAFRDRRAYLFAHVADFVPSEESDLVGTLKISGYVRGRTLNVNSLLHIVGHGD 306

Query: 303 FQLRKIEVLKDPVPLNPRI 311
           FQ+ +I+   DP PLNPR+
Sbjct: 307 FQMNQIDAPVDPFPLNPRV 315

[Close]

BLAST of Lag0038287 vs. ExPASy Swiss-Prot
Match: Q54YA7 (Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum OX=44689 GN=tsr1 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-16
Identity = 84/326 (25.77%), Postives = 141/326 (43.25%), Query Frame = 0


Query: 3   GSRAQVNKPHK-SRFSSKAT---RQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQ 62
           G   Q NK  K  +  SK     R Q K       +  KN      + A  Q+ + + + 
Sbjct: 9   GDLHQQNKGFKGGKHDSKGAIKRRAQGKIETNGARQSIKNLAIVNNKDAMRQKHQKLVKS 68

Query: 63  KRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLA------------PGT 122
           K+  LL+ KR     +  PRV+ +  LS S +   + E LL                  T
Sbjct: 69  KKNELLERKRLGLPDQVAPRVVTIIKLSESCNTKKVKEMLLQKFKLNINTGEMEMDNEET 128

Query: 123 LSS--------TVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTS 182
           L++        T  S   K+R  +L+         +E  K++D+I FV  A+        
Sbjct: 129 LNNKNNNNDNFTTISLTSKVRMMLLECQTMAYDQVIEFCKLSDIILFVIDAN-------Q 188

Query: 183 LYIDSFGSECLSVLRSLGLPSTAVLIRDL-PADIKKRNDYKKICISSITSEFPEDCKFYP 242
             ++S      +++++  +P+   +I++L    IKKRN+ KK   S     FP + K  P
Sbjct: 189 AKLNSEAERIFTIVKAQSVPTVIEIIQNLDQTPIKKRNELKKSIQSVFHFHFPNEPKVLP 248

Query: 243 ADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARS 302
            DT DE  + +   +   +    WR  RPY++ +K   +     P    + + G++R  +
Sbjct: 249 MDTNDECSQVLRYIENIHVNEIIWRKVRPYMLIEKSSYI-----PETKVVTIDGFIRGNN 308

Query: 303 LSVNQLVHVAGAGDFQLRKIEVLKDP 304
           LS  Q++H+   GDFQ+ KIE++ DP
Sbjct: 309 LSAKQIIHIPDYGDFQIEKIELIDDP 322

[Close]

BLAST of Lag0038287 vs. ExPASy TrEMBL
Match: A0A6J1L0W3 (pre-rRNA-processing protein TSR1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498098 PE=4 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 3.9e-166
Identity = 305/326 (93.56%), Postives = 316/326 (96.93%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGSR QVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQR+KMIREQKR
Sbjct: 1   MGGSRPQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRNKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLSLLAPG+ SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRASSGSKNPPRVIVLFGLSASVDLNPLAEDLLSLLAPGSSSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVTSASYYIEGSTSLYIDSFGSECLSLLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AV IRDLP DIKKRNDYKK+CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVFIRDLPTDIKKRNDYKKMCISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTSGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCRIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR+EQDAMDTHDVEV+ ++
Sbjct: 301 KDPVPLNPRMEQDAMDTHDVEVVQLL 326

[Close]

BLAST of Lag0038287 vs. ExPASy TrEMBL
Match: A0A5A7T9F0 (Pre-rRNA-processing protein TSR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G001780 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.3e-165
Identity = 304/326 (93.25%), Postives = 315/326 (96.63%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHKSRFS+KATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSTKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRALSGSKSPPRVIVLF LSASVDLNPLAEDLLSLLAPG  SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRALSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AVLIRDLP DIKK+NDYKK+CISSI+SEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVLIRDLPTDIKKKNDYKKMCISSISSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WR QRPYLMSQKVDMVADNCTPG+CTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Sbjct: 241 WRTQRPYLMSQKVDMVADNCTPGRCTLLLTGYLRARSLSVNQLVHVAGAGDFQLSKIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR EQDAMDT D E++ ++
Sbjct: 301 KDPVPLNPRTEQDAMDTQDDEIIRLL 326

[Close]

BLAST of Lag0038287 vs. ExPASy TrEMBL
Match: A0A1S3CBG5 (pre-rRNA-processing protein TSR1 homolog OS=Cucumis melo OX=3656 GN=LOC103498933 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.3e-165
Identity = 304/326 (93.25%), Postives = 315/326 (96.63%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHKSRFS+KATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSTKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRALSGSKSPPRVIVLF LSASVDLNPLAEDLLSLLAPG  SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRALSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AVLIRDLP DIKK+NDYKK+CISSI+SEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVLIRDLPTDIKKKNDYKKMCISSISSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WR QRPYLMSQKVDMVADNCTPG+CTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Sbjct: 241 WRTQRPYLMSQKVDMVADNCTPGRCTLLLTGYLRARSLSVNQLVHVAGAGDFQLSKIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR EQDAMDT D E++ ++
Sbjct: 301 KDPVPLNPRTEQDAMDTQDDEIIRLL 326

[Close]

BLAST of Lag0038287 vs. ExPASy TrEMBL
Match: A0A6J1H8A7 (pre-rRNA-processing protein TSR1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461047 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 7.4e-165
Identity = 304/326 (93.25%), Postives = 314/326 (96.32%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVT NNVAKGARAARLQR+KMIREQKR
Sbjct: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTTNNVAKGARAARLQRNKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLSLLA G+ SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRASSGSKNPPRVIVLFGLSASVDLNPLAEDLLSLLASGSSSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVTSASYYIEGSTSLYIDSFGSECLSLLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AV IRDLP DIKKRNDYKK+CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVFIRDLPTDIKKRNDYKKMCISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Sbjct: 241 WRNQRPYLMSQKVDMVADNCTSGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLCRIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR EQDAMDTHDVEV+ ++
Sbjct: 301 KDPVPLNPRTEQDAMDTHDVEVVQLL 326

[Close]

BLAST of Lag0038287 vs. ExPASy TrEMBL
Match: A0A0A0KDA2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087900 PE=4 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 4.8e-164
Identity = 303/326 (92.94%), Postives = 312/326 (95.71%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR 60
           MGG+RAQVNKPHKSRFSSKATRQQHKTSLKD+SKVTKNNVAKGARAARLQRSKMIREQKR
Sbjct: 1   MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKNNVAKGARAARLQRSKMIREQKR 60

Query: 61  VALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSSTVASSEYKLRA 120
            A+LQDKR LSGSKSPPRVIVLF LSASVDLNPLAEDLLSLLAPG  SSTVASSEYKLRA
Sbjct: 61  AAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAPGASSSTVASSEYKLRA 120

Query: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180
           TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST
Sbjct: 121 TVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPST 180

Query: 181 AVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPH 240
           AVLIRDLP DIKK+NDYKK+CISSI SEFPEDCKFY ADTKDELHKFMWLFKEQRLTVPH
Sbjct: 181 AVLIRDLPTDIKKKNDYKKMCISSINSEFPEDCKFYAADTKDELHKFMWLFKEQRLTVPH 240

Query: 241 WRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL 300
           WR QRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Sbjct: 241 WRTQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLSKIEVL 300

Query: 301 KDPVPLNPRIEQDAMDTHDVEVMNII 327
           KDPVPLNPR EQDAMDT D E++ ++
Sbjct: 301 KDPVPLNPRTEQDAMDTQDDEIIRLL 326

[Close]

BLAST of Lag0038287 vs. TAIR 10
Match: AT1G42440.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). )

HSP 1 Score: 425.6 bits (1093), Expect = 3.6e-119
Identity = 224/331 (67.67%), Postives = 271/331 (81.87%), Query Frame = 0


Query: 1   MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTK--NNVAKGARAARLQRSKMIREQ 60
           MG SR QVNK HK+RFSSK++R  H+T+L+D  ++ K  +N  KGA+AAR+QR KM+REQ
Sbjct: 1   MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ 60

Query: 61  KRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLA---PGTLSSTVASSE 120
           KR A+L++KRA  G  S PRVIVLF LSASV+LN L ED+L LL+    G  SSTVASSE
Sbjct: 61  KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE 120

Query: 121 YKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSL 180
           YKLRATVLKAP+GDL +CMEMAKVADL+AFVASAS   E ++S +IDSFGS+CLSV RS+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI 180

Query: 181 GLPSTAVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQR 240
           GLPST VLIRDLP+D+KK+N+ KK+C S + SEFPEDCKFYPADT+DELHKFMWLFK QR
Sbjct: 181 GLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDELHKFMWLFKAQR 240

Query: 241 LTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLR 300
           LTVPHWR+QR Y++++K  M+ D+ + GKCTLLL+GYLRAR LSVNQLVHV+G GDFQ  
Sbjct: 241 LTVPHWRSQRSYIVARKAGMLVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFS 300

Query: 301 KIEVLKDPVPLNPRIEQDAM---DTHDVEVM 324
           KIEVLKDP PLN R  Q++M   D+HD EV+
Sbjct: 301 KIEVLKDPFPLNERKNQNSMELDDSHDEEVL 331

The following BLAST results are available for this feature:

BLAST of Lag0038287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875506.1	2.8e-166	94.17	pre-rRNA-processing protein TSR1 homolog [Benincasa hispida]	[more]
XP_023513549.1	2.8e-166	93.87	pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo] >XP_023513...	[more]
XP_023004943.1	8.1e-166	93.56	pre-rRNA-processing protein TSR1 homolog [Cucurbita maxima] >XP_023004944.1 pre-...	[more]
KAG6592850.1	1.4e-165	93.25	Pre-rRNA-processing protein TSR1-like protein, partial [Cucurbita argyrosperma s...	[more]
XP_023547507.1	2.4e-165	93.56	pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo] >XP_023547...	[more]

BLAST of Lag0038287 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5R434	4.1e-27	32.09	Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii OX=9601 GN=TSR1 PE=2 SV...	[more]
Q5XGY1	2.6e-26	30.46	Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis OX=8355 GN=tsr1 PE=2 ...	[more]
Q2NL82	4.5e-26	32.09	Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens OX=9606 GN=TSR1 PE=1 SV...	[more]
Q5SWD9	8.5e-25	31.97	Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX=10090 GN=Tsr1 PE=1 S...	[more]
Q54YA7	3.2e-16	25.77	Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum OX=44689 GN...	[more]

BLAST of Lag0038287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0W3	3.9e-166	93.56	pre-rRNA-processing protein TSR1 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5A7T9F0	3.3e-165	93.25	Pre-rRNA-processing protein TSR1-like protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CBG5	3.3e-165	93.25	pre-rRNA-processing protein TSR1 homolog OS=Cucumis melo OX=3656 GN=LOC103498933...	[more]
A0A6J1H8A7	7.4e-165	93.25	pre-rRNA-processing protein TSR1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0KDA2	4.8e-164	92.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087900 PE=4 SV=1	[more]

BLAST of Lag0038287 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42440.1	3.6e-119	67.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012948	AARP2CN	SMART	SM00785	aarp2cn2	coord: 223..304 e-value: 4.0E-23 score: 92.8
IPR012948	AARP2CN	PFAM	PF08142	AARP2CN	coord: 223..303 e-value: 1.6E-20 score: 73.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..38
None	No IPR available	PANTHER	PTHR12858:SF1	PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOG	coord: 2..326
IPR039761	Ribosome biogenesis protein Bms1/Tsr1	PANTHER	PTHR12858	RIBOSOME BIOGENESIS PROTEIN	coord: 2..326
IPR030387	Bms1/Tsr1-type G domain	PROSITE	PS51714	G_BMS1	coord: 76..237 score: 18.017952

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038287.1	Lag0038287.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030688	preribosome, small subunit precursor
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0034511	U3 snoRNA binding