Lag0038285 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038285
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	pre-rRNA-processing protein TSR1 homolog
Location	chr2: 14798010 .. 14800134 (-)
RNA-Seq Expression	Lag0038285
Synteny	Lag0038285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGGTCTCTGTTCTAAGTTTGTTCTCGTTCATACATATGGTTCTCTAAAGGTCATACTAAAACGTGCATAGAGAACCCCGTGGTCTATACTAATCAACTAGTCGGTTAAGCACTTCATATTCCAAGGGATATTTCTAAACTTAGTCCCTTTAACAACTGCAATACTACCGAAAATTCGGCAGCATAACGACATACATATAGGCAAATCCCAAATTTTCCTATCACCTAGAAACAAGACAATACACTTCTTTAACCAAAGCGAGTCAGATCTCACATCCACAATTCAACCACAACTTCAACAAACATTCAGTCCATCCTCCAATATCATAAACAGACATCCAAAGAAACCATAACTTATCCAACCCAAACATGCTTTGAAGTGAACCAAAAGACGCTAATCCAACTAAAGGCAGTCTCAACAGACTACAATTAACTATAAAATTCTCATACAGATACCATGCCTCACAATAAAACTCAACATGCTTATTTAAATCCAAAAGCAAAACTCAAGGCTCAAATCCGATTCATGCTAGCATATTAAATTCTCAAAGAAAATTAGTCCAAAACATAGGACTTAGACCATTGATTACTTATCAATTCCAACGATCATGCAATGGGTCTAAAACACGAAAAATTGCATCCAAATGGCTACTTACCTTAGCAAAATAAGTTGGCTTGACAAAACTATAAAGTTCCTTAGTTCCAATGCCTTAAAACAAGCTACATAAGAGAAAGGGAGAAATCCTTTAAAATCAATAGGACTACAACCGATTATGCAATTGTATCTTCTGTTGTTTCTTCACTCATCAAGTTTTGAGTTTTGATCTCTAGTTTTTTAATTGGCCATGTACCTGTTAATTTGTAGGTAGCCAACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGTCTTTCTATTTTAAGATCTTTGGGCTTACTAAGTATTGCAGTGCTTATTCGAGTATGTTATCACATTATTTCCTTTTTGAGACTTCTAATCTAAAAGGAGAATAATTTTTGTGTGTATAGTTAAAGCTACTTTCCTTTTCTGGTAGGACTTACCCACTGATATAGAAACGATTATAAAAAAATGTGTATTTCTAGCATTACTTTTGAATTTCCCGAAGATTGCAAGTTTTATCCCGCATATACTAAAGATGAGTTACACAAGGTAAACAAGTGTAGGTTGTTTGTATAGATTACTCATTTACATGCCTTTTTATGCTTATTTTCAGTTTTCATGATTTATATTTGTAGTTTATGTGGCTTTTTAAGGAGAGAAATCAAAGGCCTTATTTGATGTCTCATAAGGTTCTTAAATATATGTACTTTGATACATTTCATAGATTTTGACCACTATTTTTTCTTACTCTATAAGGTACGTCAGAAGTTAAAGAATTCTGGAGAACAAAACTTGGAAGAACTGATCGACCAAGTCGACCCACCCTTCACGGAAGAAGTCATGAAAGCCGAGGTGCCCCAGAAGTTCAAGGTACCTACATCCAAACCGTATGGTGGCAAGAAAGACCTCGTATAACATCTAGGCTCCTACAAGAACTATATGGATTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCCTTCTCTTTCATTCTAACAGGATCAACCAAGTAATGGTTTGAAAGGTTGAAAAGGAGATCCATTAGCTCTTTCAAGGAATTAGCCTAAGCATTCCTCTGGCAATTCGTGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTCTTAATTGTCAAACAACAGCCTGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAACACTGCAGGTTGAGGGATATAGTGAGAGATCAACCCTAGTAGCCATAACAGCCGGACTAGAAGACAAGAGACTTCTTAATTCGATAGGTAATAGCCAACCTCGAACATATGCAGACTTTGTTTCCCGAGCACATAAATACATGAGCGCAGAGGAGTTGCTCAAGTCAAAGAAGTCGGAACGAGAATACAAGAGGTCTTCTTCATTCGATCACGACAGTAAGAAGGACAAAAGGCAGCGAACAGACGAAGGAGGCCAAGGTTGA

mRNA sequence

ATGGATAAGGTAGCCAACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGTCTTTCTATTTTAAGATCTTTGGGCTTACTAAGTATTGCAGTGCTTATTCGAGTACGTCAGAAGTTAAAGAATTCTGGAGAACAAAACTTGGAAGAACTGATCGACCAAGTCGACCCACCCTTCACGGAAGAAGTCATGAAAGCCGAGGTGCCCCAGAAGTTCAAGCCTGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAACACTGCAGGTTGAGGGATATAGTGAGAGATCAACCCTAGTAGCCATAACAGCCGGACTAGAAGACAAGAGACTTCTTAATTCGATAGGTAATAGCCAACCTCGAACATATGCAGACTTTGTTTCCCGAGCACATAAATACATGAGCGCAGAGGAGTTGCTCAAGTCAAAGAAGTCGGAACGAGAATACAAGAGGTCTTCTTCATTCGATCACGACAGTAAGAAGGACAAAAGGCAGCGAACAGACGAAGGAGGCCAAGGTTGA

Coding sequence (CDS)

ATGGATAAGGTAGCCAACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGTCTTTCTATTTTAAGATCTTTGGGCTTACTAAGTATTGCAGTGCTTATTCGAGTACGTCAGAAGTTAAAGAATTCTGGAGAACAAAACTTGGAAGAACTGATCGACCAAGTCGACCCACCCTTCACGGAAGAAGTCATGAAAGCCGAGGTGCCCCAGAAGTTCAAGCCTGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAACACTGCAGGTTGAGGGATATAGTGAGAGATCAACCCTAGTAGCCATAACAGCCGGACTAGAAGACAAGAGACTTCTTAATTCGATAGGTAATAGCCAACCTCGAACATATGCAGACTTTGTTTCCCGAGCACATAAATACATGAGCGCAGAGGAGTTGCTCAAGTCAAAGAAGTCGGAACGAGAATACAAGAGGTCTTCTTCATTCGATCACGACAGTAAGAAGGACAAAAGGCAGCGAACAGACGAAGGAGGCCAAGGTTGA

Protein sequence

MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIRVRQKLKNSGEQNLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGYSERSTLVAITAGLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKSKKSEREYKRSSSFDHDSKKDKRQRTDEGGQG

Homology

[Close]

BLAST of Lag0038285 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-14
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 62  NLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGYSERSTLVAITA 121
           +LEEL+DQ D PFTEE+M+ +     +  ESL DY+TRFNKE LQVEG ++  +L+A   
Sbjct: 89  DLEELLDQADSPFTEEIMREK-----RTTESLHDYVTRFNKEKLQVEGLTDAVSLLAFIF 148

Query: 122 GLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKS------KKSEREYKRSSSFDHD 181
           G+ D+ L  S G   P T+++ +SRA +YMSA E   S      K+++++ +RS      
Sbjct: 149 GVRDEHLSFSFGKRTPSTFSEALSRAQRYMSAGEFFYSKRESNGKRTDQKRERSGDKPQG 208

Query: 182 SKKDKRQRT 185
           S+ +KR R+
Sbjct: 209 SRWEKRDRS 212

[Close]

BLAST of Lag0038285 vs. NCBI nr
Match: TYK24600.1 (pre-rRNA-processing protein TSR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR 51
          M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Sbjct: 37 MAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIR 86

[Close]

BLAST of Lag0038285 vs. NCBI nr
Match: KAA0039900.1 (pre-rRNA-processing protein TSR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR 51
           M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Sbjct: 136 MAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIR 185

[Close]

BLAST of Lag0038285 vs. NCBI nr
Match: XP_011656753.1 (pre-rRNA-processing protein TSR1 homolog [Cucumis sativus] >XP_011656754.1 pre-rRNA-processing protein TSR1 homolog [Cucumis sativus] >XP_011656755.1 pre-rRNA-processing protein TSR1 homolog [Cucumis sativus] >KGN46362.1 hypothetical protein Csa_005399 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR 51
           M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Sbjct: 136 MAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIR 185

[Close]

BLAST of Lag0038285 vs. NCBI nr
Match: XP_008459984.1 (PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR 51
           M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Sbjct: 136 MAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIR 185

The following BLAST results are available for this feature:

BLAST of Lag0038285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142767.1	2.9e-14	41.86	uncharacterized protein LOC111012805 [Momordica charantia]	[more]
TYK24600.1	2.7e-12	90.00	pre-rRNA-processing protein TSR1-like protein [Cucumis melo var. makuwa]	[more]
KAA0039900.1	2.7e-12	90.00	pre-rRNA-processing protein TSR1-like protein [Cucumis melo var. makuwa]	[more]
XP_011656753.1	2.7e-12	90.00	pre-rRNA-processing protein TSR1 homolog [Cucumis sativus] >XP_011656754.1 pre-r...	[more]
XP_008459984.1	2.7e-12	90.00	PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis melo]	[more]

BLAST of Lag0038285 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038285.1	Lag0038285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030688	preribosome, small subunit precursor
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0034511	U3 snoRNA binding