Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTGTACCTACAATTGTCGATGTTGAATACTCGACCGATAATATGTCTTCATTGAACTCCTTCGATTTACAGAGGATTTTCAAAACGATCGACAAAAATGGCGACGGTTTCGTGAGTATCGAGGAACTCAATTGGCTGCTTAATGGTGTCGGCGTCGACCTAATTTTGGACGATCTCGAGAACTTGATAGGTAAATCGAAGATTGATTTCAATGAATTCTTGTCTCTGTACGAATCGTTATTGGAGAAAAATGATTCGGAGAACGGAGAAGGCGAAGAGGAAGAGGAGATTGAGAACGATCTTTTGAATGCATTTGAAGTGTTCGACGAAAATCGAGATGGATTTATTTCGAGCGATGAGCTTCGGAATGTGTTGGTGAGGTTGGGGCTTTGGGATGAGCGTTGTGGCAGTGATTGTAGTCGTATGATTGGCGCATTTGATACCAATTTGGATGGGCGACTAGATTTTGAGGAATTCAAGAACATGATGCGCTCTTCCAATTCTTCTTCTTAG
mRNA sequence
ATGGGCATTGTACCTACAATTGTCGATGTTGAATACTCGACCGATAATATGTCTTCATTGAACTCCTTCGATTTACAGAGGATTTTCAAAACGATCGACAAAAATGGCGACGGTTTCGTGAGTATCGAGGAACTCAATTGGCTGCTTAATGGTGTCGGCGTCGACCTAATTTTGGACGATCTCGAGAACTTGATAGGTAAATCGAAGATTGATTTCAATGAATTCTTGTCTCTGTACGAATCGTTATTGGAGAAAAATGATTCGGAGAACGGAGAAGGCGAAGAGGAAGAGGAGATTGAGAACGATCTTTTGAATGCATTTGAAGTGTTCGACGAAAATCGAGATGGATTTATTTCGAGCGATGAGCTTCGGAATGTGTTGGTGAGGTTGGGGCTTTGGGATGAGCGTTGTGGCAGTGATTGTAGTCGTATGATTGGCGCATTTGATACCAATTTGGATGGGCGACTAGATTTTGAGGAATTCAAGAACATGATGCGCTCTTCCAATTCTTCTTCTTAG
Coding sequence (CDS)
ATGGGCATTGTACCTACAATTGTCGATGTTGAATACTCGACCGATAATATGTCTTCATTGAACTCCTTCGATTTACAGAGGATTTTCAAAACGATCGACAAAAATGGCGACGGTTTCGTGAGTATCGAGGAACTCAATTGGCTGCTTAATGGTGTCGGCGTCGACCTAATTTTGGACGATCTCGAGAACTTGATAGGTAAATCGAAGATTGATTTCAATGAATTCTTGTCTCTGTACGAATCGTTATTGGAGAAAAATGATTCGGAGAACGGAGAAGGCGAAGAGGAAGAGGAGATTGAGAACGATCTTTTGAATGCATTTGAAGTGTTCGACGAAAATCGAGATGGATTTATTTCGAGCGATGAGCTTCGGAATGTGTTGGTGAGGTTGGGGCTTTGGGATGAGCGTTGTGGCAGTGATTGTAGTCGTATGATTGGCGCATTTGATACCAATTTGGATGGGCGACTAGATTTTGAGGAATTCAAGAACATGATGCGCTCTTCCAATTCTTCTTCTTAG
Protein sequence
MGIVPTIVDVEYSTDNMSSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLIGKSKIDFNEFLSLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDERCGSDCSRMIGAFDTNLDGRLDFEEFKNMMRSSNSSS
Homology
BLAST of Lag0038241 vs. NCBI nr
Match:
XP_038899375.1 (calmodulin-like protein 3 [Benincasa hispida])
HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 122/172 (70.93%), Postives = 136/172 (79.07%), Query Frame = 0
Query: 6 TIVDVEYSTDNMSSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLI 65
+IVDVE S MS LNS DLQRIF+TID+NGDGFVS+EELN LLN +GVDL +DLE+L
Sbjct: 46 SIVDVE-SLCTMSPLNSSDLQRIFETIDRNGDGFVSMEELNLLLNRIGVDLASEDLESLT 105
Query: 66 GKSKIDFNEFLSLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRN 125
GKSKID NEFL LYES+ EK + GE EE+E+DLLNAF VFDENRDGFIS DEL N
Sbjct: 106 GKSKIDLNEFLCLYESISEKKE---GENRGSEEVESDLLNAFMVFDENRDGFISCDELEN 165
Query: 126 VLVRLGLW-DERC----GSDCSRMIGAFDTNLDGRLDFEEFKNMMRSSNSSS 173
VLVRLGLW DERC G C RMIGAFD +LDGR+DF+EFKNMM SSNS S
Sbjct: 166 VLVRLGLWNDERCGGCGGDYCRRMIGAFDMDLDGRIDFQEFKNMMNSSNSPS 213
BLAST of Lag0038241 vs. NCBI nr
Match:
XP_022976028.1 (probable calcium-binding protein CML44 [Cucurbita maxima])
HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 116/157 (73.89%), Postives = 128/157 (81.53%), Query Frame = 0
Query: 17 MSSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLIGKSKIDFNEFL 76
MS N+ DLQRIF+TID+NGDGFVSIEEL+WLLN GVD I DDLE+LIGKSKIDF+EFL
Sbjct: 1 MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSKIDFDEFL 60
Query: 77 SLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDE- 136
SLYES+ E N EEIE+DLLNAF+VFDENRDGFIS DEL NVLVRLGLWD+
Sbjct: 61 SLYESISEIN-------RGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLGLWDDK 120
Query: 137 RCGSDCSRMIGAFDTNLDGRLDFEEFKNMMRSSNSSS 173
RC DC RMIGAFD +LDGRLDFEEFKNMM S+ SS
Sbjct: 121 RCVRDCRRMIGAFDVDLDGRLDFEEFKNMMNYSSHSS 150
BLAST of Lag0038241 vs. NCBI nr
Match:
KAG7025009.1 (Calcium-binding protein CML42, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 118/158 (74.68%), Postives = 129/158 (81.65%), Query Frame = 0
Query: 17 MSSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLIGKSKIDFNEFL 76
MS N+ DLQRIF+TID+NGDGFVSIEEL+WLLN GVD I DDLE+LIGKS IDF+EFL
Sbjct: 1 MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
Query: 77 SLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDE- 136
SLYES+ E N EEIE+DLLNAF+VFDENRDGFIS DEL NVLVRLGLWD+
Sbjct: 61 SLYESISEMN-------RGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLGLWDDR 120
Query: 137 RCGSDCSRMIGAFDTNLDGRLDFEEFKNMMR-SSNSSS 173
RC DC RMIGAFD +LDGRLDFEEFKNMM SSNSSS
Sbjct: 121 RCVRDCRRMIGAFDVDLDGRLDFEEFKNMMNYSSNSSS 151
BLAST of Lag0038241 vs. NCBI nr
Match:
XP_023536413.1 (probable calcium-binding protein CML44 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 214.9 bits (546), Expect = 5.3e-52
Identity = 115/157 (73.25%), Postives = 128/157 (81.53%), Query Frame = 0
Query: 17 MSSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLIGKSKIDFNEFL 76
MS N+ DLQRIF+TID+NGDGFVSIEEL+WLLN GVD I DDLE+LIGKS IDF+EFL
Sbjct: 1 MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
Query: 77 SLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDE- 136
SLYES+ E N EEIE+DLLNAF+VFDENRDGFIS DEL NVLVRLGLWD+
Sbjct: 61 SLYESISEIN-------RGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLGLWDDR 120
Query: 137 RCGSDCSRMIGAFDTNLDGRLDFEEFKNMMRSSNSSS 173
RC DC RMIGAFD +LDGRLDFEEFKNMM S++SS
Sbjct: 121 RCVRDCRRMIGAFDVDLDGRLDFEEFKNMMNYSSNSS 150
BLAST of Lag0038241 vs. NCBI nr
Match:
KAG6592136.1 (Calcium-binding protein CML42, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 214.5 bits (545), Expect = 7.0e-52
Identity = 117/158 (74.05%), Postives = 128/158 (81.01%), Query Frame = 0
Query: 17 MSSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLIGKSKIDFNEFL 76
MS N+ DLQRIF+TID+NGDGFVSIEEL+WLLN GVD I DDLE+LIGKS IDF+EFL
Sbjct: 1 MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
Query: 77 SLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDE- 136
SLYES+ E N EEIE+DLLNAF+VFDEN DGFIS DEL NVLVRLGLWD+
Sbjct: 61 SLYESISEMN-------RGGEEIESDLLNAFQVFDENHDGFISCDELHNVLVRLGLWDDK 120
Query: 137 RCGSDCSRMIGAFDTNLDGRLDFEEFKNMMR-SSNSSS 173
RC DC RMIGAFD +LDGRLDFEEFKNMM SSNSSS
Sbjct: 121 RCVRDCRRMIGAFDVDLDGRLDFEEFKNMMNYSSNSSS 151
BLAST of Lag0038241 vs. ExPASy Swiss-Prot
Match:
Q9LPK5 (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana OX=3702 GN=CML44 PE=2 SV=2)
HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 69/151 (45.70%), Postives = 99/151 (65.56%), Query Frame = 0
Query: 18 SSLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVG-VDLILDDLENLIGKSKIDFNEFL 77
S + + DL+R+FKT+DKN DG V+++EL W+L+ +G + D+LE ++GK +D +EFL
Sbjct: 4 SFITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFL 63
Query: 78 SLYESLLEKNDSENGEGEEEEEIEND--LLNAFEVFDENRDGFISSDELRNVLVRLGLWD 137
Y + DS+ + + +ND + AF VFD N DG+IS++ELR+VL RLG +
Sbjct: 64 RFYYDAV--LDSKGSKKNIDVVADNDEAIARAFNVFDVNGDGYISAEELRDVLERLGFEE 123
Query: 138 ERCGSDCSRMIGAFDTNLDGRLDFEEFKNMM 166
E DC RMI D NLDG +DFEEFKNM+
Sbjct: 124 EAKAWDCGRMIRVHDKNLDGFVDFEEFKNMI 152
BLAST of Lag0038241 vs. ExPASy Swiss-Prot
Match:
Q9SVG9 (Calcium-binding protein CML42 OS=Arabidopsis thaliana OX=3702 GN=CML42 PE=1 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 1.3e-24
Identity = 71/162 (43.83%), Postives = 103/162 (63.58%), Query Frame = 0
Query: 19 SLNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLI------GKSKIDF 78
SLN+ LQRIF DKNGDGF+++EEL+ L +G++ L DL++ + G + ++F
Sbjct: 24 SLNALRLQRIFDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGLNF 83
Query: 79 NEFLSLYESLLEK---NDSENGEGEEE----EEIENDLLNAFEVFDENRDGFISSDELRN 138
++F SL+++L + GE E++ E E+DL AF+VFDEN DGFIS+ EL+
Sbjct: 84 DDFSSLHKTLDDSFFGGACGGGENEDDPSSAAENESDLAEAFKVFDENGDGFISARELQT 143
Query: 139 VLVRLGLWDERCGSDCSRMIGAFDTNLDGRLDFEEFKNMMRS 168
VL +LGL + +MI + D N DGR+DF EFKNMMR+
Sbjct: 144 VLKKLGLPEGGEMERVEKMIVSVDRNQDGRVDFFEFKNMMRT 185
BLAST of Lag0038241 vs. ExPASy Swiss-Prot
Match:
Q0JC44 (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica OX=39947 GN=CML22 PE=3 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 66/151 (43.71%), Postives = 90/151 (59.60%), Query Frame = 0
Query: 24 DLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLI------GKSKIDFNEFLS 83
+L R+F+ D+NGDG ++ EEL L +G+ + D+L +I G +D EF
Sbjct: 92 ELARVFELFDRNGDGRITREELEDSLGKLGIPVPADELAAVIARIDANGDGCVDVEEFGE 151
Query: 84 LYESLLE-KNDSENGEG-EEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDE 143
LY S++ +DS++G EEEEE + D+ AF VFD N DG+I+ DEL VL LGL
Sbjct: 152 LYRSIMAGGDDSKDGRAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQG 211
Query: 144 RCGSDCSRMIGAFDTNLDGRLDFEEFKNMMR 167
R +C RMIG D + DGR+DF EF MMR
Sbjct: 212 RTAEECRRMIGQVDRDGDGRVDFHEFLQMMR 242
BLAST of Lag0038241 vs. ExPASy Swiss-Prot
Match:
Q9SRR7 (Calmodulin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CML3 PE=2 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 0
Query: 20 LNSFDLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLI------GKSKIDFN 79
++ +L RIF+ D+NGDG ++ +ELN L +G+ + DL +I G +D
Sbjct: 1 MDQAELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIE 60
Query: 80 EFLSLYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLW 139
EF LY++++E+ D E D+ AF VFD+NRDGFI+ +ELR+VL LGL
Sbjct: 61 EFGGLYQTIMEERDE-----------EEDMREAFNVFDQNRDGFITVEELRSVLASLGLK 120
Query: 140 DERCGSDCSRMIGAFDTNLDGRLDFEEFKNMMR 167
R DC RMI D + DG ++F+EFK MM+
Sbjct: 121 QGRTLEDCKRMISKVDVDGDGMVNFKEFKQMMK 142
BLAST of Lag0038241 vs. ExPASy Swiss-Prot
Match:
Q9SU00 (Calmodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CML2 PE=2 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 3.0e-21
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 0
Query: 24 DLQRIFKTIDKNGDGFVSIEELNWLLNGVGVDLILDDLENLIGKSKI------DFNEFLS 83
+L R+F+ DKNGDG ++ EL VG+ + +++ +I K + D +EF S
Sbjct: 5 ELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGS 64
Query: 84 LYESLLEKNDSENGEGEEEEEIENDLLNAFEVFDENRDGFISSDELRNVLVRLGLWDERC 143
LY+ ++ EE+E E D+ AF VFD+N DGFI+ +ELR+VL +GL R
Sbjct: 65 LYQEMV-----------EEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRT 124
Query: 144 GSDCSRMIGAFDTNLDGRLDFEEFKNMMR 167
DC +MI D + DG ++F+EFK MMR
Sbjct: 125 LEDCKKMISKVDVDGDGMVNFKEFKQMMR 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038899375.1 | 1.1e-52 | 70.93 | calmodulin-like protein 3 [Benincasa hispida] | [more] |
XP_022976028.1 | 1.8e-52 | 73.89 | probable calcium-binding protein CML44 [Cucurbita maxima] | [more] |
KAG7025009.1 | 1.8e-52 | 74.68 | Calcium-binding protein CML42, partial [Cucurbita argyrosperma subsp. argyrosper... | [more] |
XP_023536413.1 | 5.3e-52 | 73.25 | probable calcium-binding protein CML44 [Cucurbita pepo subsp. pepo] | [more] |
KAG6592136.1 | 7.0e-52 | 74.05 | Calcium-binding protein CML42, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
Match Name | E-value | Identity | Description | |
Q9LPK5 | 1.1e-26 | 45.70 | Probable calcium-binding protein CML44 OS=Arabidopsis thaliana OX=3702 GN=CML44 ... | [more] |
Q9SVG9 | 1.3e-24 | 43.83 | Calcium-binding protein CML42 OS=Arabidopsis thaliana OX=3702 GN=CML42 PE=1 SV=1 | [more] |
Q0JC44 | 1.2e-22 | 43.71 | Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica OX=39947 ... | [more] |
Q9SRR7 | 1.6e-22 | 39.87 | Calmodulin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CML3 PE=2 SV=1 | [more] |
Q9SU00 | 3.0e-21 | 38.93 | Calmodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CML2 PE=2 SV=1 | [more] |