Lag0038233 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038233
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	U6 snRNA-associated Sm-like protein LSm4
Location	chr2: 14115350 .. 14122967 (+)
RNA-Seq Expression	Lag0038233
Synteny	Lag0038233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAGGAGCTGATGAGGACAGCCGGGGAGAAATCAGGCTGGGAGATGGGCCCAAGAGGTGAAACCGACAAGTGGGACGGGCCAAGATCGAAGGAGTCGGGCTTTTGGCCTGACCCCCTGCTCGGCTTCGGCCCATGGCCGAGGCCGAGCCCGTCCGACTCCATTCGATCCCTACCGCCTTTGGGCGCCCCGGTTCCGCCTGGTTTGACCTAAAACGCCTCCAGATCCCTAAAAACCCTAGGAGGATGAGCATGTATTTATACCCCTCTTCACCACTGAATAAGGGGACCCGAACTCTATTCTCGACTCCCTACTCTTACTCTCTAGCTTTCCCTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTGTCTTGCAGACCACGTCTTCCCCCTCATCTACAAATTTACCGTCGGTGGCACGTGAAGGTCAGATGAGTTCCCTCTGACCAAAATCGATCATCAACAATACTTATAGACACAAGTGTCATATTTATCTATTTTTAAAAATGTAATAATTATGCCCTATTCCTATAGGGGTCGTTTGGTGCGCGGGAATTTGATTGGAATGGAATGGAATGTGATTCCCATGGGAATATTTTTGCTGGAATCATGATTCCCATGCATGTGTGTTGGTAGGAGTGCAAACAAAAATCGAAAAACCGACAAACCGAACCGAACCAAATCGATCCAATAGTTTGGTTCGATTATTTTGAAAAAATATGGACATCTCGGTTTCGTTTTTGGGAAAACCGAAAATTGTCGGTTCGGTTCAGTTTTCATTAAAAAAACCAATAAAAAACCGAACCGAACCGACTATATATATACCACTTAAAAAACTCTAACCTTTTTCATCTTGCCTCTCTCCACATCTCACTTTTTTCCTAAATTGGTTGGAAATCTCTTTTTTCCATGTAATTTAAAGTATAAATTATGATATTATTTGTATGTTTATCTTTATTATGTATATTTATTTAAAATCAAATATTTAAAAATTGTTATTTACTGAGAAAATTAAGTAATTGTATTGAATTAATTAATTAATTGAAATTTTGTATTGAAAAAATAGGGTACAATGGATCATTGGGCCAAAAATTAAAAAAAAAAAAAAAACAAATGAGCTGAAATTAGAAGAGAAAATGAGTTATTTAAAAAAATAATAAAAAGGCCCACATTGGGCCCAAAACCAAAAACCGATCCATTGGACAAACCGAACCGAAGGAAAACCGAACCATTGGACATGTCCCATATTGGACATTGGTTCGGTTTAGAGTTTTGTAAAACCGATTGGATCAGTTCAGTTCGCGGTTTGGTCAAAAACCGACAAAACCGAACTGGGTATCACCCTGTTTGATGCATTGGATTTGGGTTGGAATTAATGGAGAGAGAAATAGTGAGTCCCATCAAAATTATGAAGAAAAATAGAGAGAGAAATAATGGGACCCACCAAAATGTGGTTAAAATAGAAAAAGAAATGGTGGGTCCCATCAAAATTATGAAGAAAAATGGGGAGAGAAATAGTGTAACCCACCAAAATGTGGGAATGGGTTGGAATCCACACGCCCACCATTATATTCCAAACTCACATCATTCCAAGACAACCAAACATGGGCATCTCTTTCCAATCCATGTCAACTCATTCTAAACCCTTGGGCCAAATAGCCCCATAGAAAAAAGGAAACTCTCTTTCAATTCATTCTCCTAAAAGGAAACAGAGAACTCTAAGTCTACTATAATAGAAGAGTATATCTCCAAAAGAGGGAAACTCAACCTATTACTCATTCATTATCATTCTTCTTCTTCATTTTCAATTGACTTGCTACACCCACAACTTGACTTAAGCATCTACAGTGGCGTACAGTCTTTTATTGTTTTGCATGTAACGTTTTTCCACATTCAAACAAATTTATCATTGCTCTTACTTAAAGGTTAGATGCATTTTTCTCATCCGAATTTTGGCAATAATATATTATATTTCAATAGAAAGTTTTGAAAATTACAACATTTAATTAAAAAACTAATGATAGATGAGCCCTTTTCAAAAAAAAAAAAAAAGTCCATTTTTACCTTTATTTCACAAATGTTAATTTTTAGAAGAAAACATTTCGACTTCAATTTAGTTTGAGTTTTTGTTTTTGTTTTTTTTCTCATGATTTTACTCTCATTTAATATTATCTACCCATATTTAAATTCTTAATTTTTAATTTATCTTTTCCTTGTACACATTTTTTTTCTCATTGGAGTCACAAGCTTAATTTAATGGCAAATAAGTAAATTCAAGCCTATTTTGGACTTCTGTTCGCCGAACACAAATCTGAAATCATTTAAGGTCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGAAAATTATGCATGTTTTCTTCCAAATTTCCTACAATAATTTTCATCTTTGTTAAGCAATCATATGAAATCCTTGCCAAATTTTAAAAACAAAAACAAGTTTTTAGAAACTATTTTTTTGGTTTTCAAAATTTGACTTGGTTTTTTAAAACAAGGAAGAAGGTAGATTCTAAAACAAAGAAATTGAATAGGTGTGTATAAGTTTAATTTTCAAAAACTAAAAACTAAAAACAAAATGGTTATCAAATGAGGCCTAGTTAACCCTGAAATATAAACAAGGGAAAAAATCATTTTTAACCATAAACTTTGGGGGTTGTATCAATTTTAACCCTGAACTTTCAATTTCATCAAATTGAACCCTAAACTTAACAAGGTGTATCAATTTTAACCCTGAACTTCCAATTTCATCAAATTGAACCTCAAACTTATCAGATTGTGTCGATTTTAACCTCAAACTGGCGTAAGTGTTACAATGTATACATTTGGTTAACTTTCCATTTGAACCACCATACACAATTTATTATTTCTTTTTTTTTTCCCTTAATTCACATTGTACCTGAATTGGTTTCTTATAAATAAAATATTGGAGAAACTTAATTTTATATGACTTTTCTTGTCGTTGAAAATTTTAATTGTGAAGGATTTTTCGCAGGTATTTAAGATTACGAAAGCAAAGAAATTTTGGACTTCAAATATTTGCTGGTTTGTTTTTATTGTTTCTAAGAATTTTGTGAGATTTTTTTTCTTCTTTTACATTTTTTTTCTTGCTAATTAGAAGAATGTACAAACGTAGAAAACGAAAACAAAGAAATTTCGAGTTTTTTATTTATCACATTTGTTGGATTTTTCTTGTTGCCCATAACTTTGTGATTTTTTTTTGGATAATAATGAGAAGAATAATCTAAAATATTTGATTTCTTATAGTTTTTCCAAAAAAAATCTTATAAAATACTAATCATGCAATGTGAATTAAAAAAAAGAAAAGGAAATTGTCAATTACATATTTTTATAGCAATTCAAATGAAAGTTGACCAAAATCTACTTGCAACATTTATGCAAGTTTGAGATTCAAATTGATACTATGTTAAGTTTAGAATTCAATTGGATAAAATTAAAAGTTTGTCTGGGTCAAAATTGATTTTTTTTCCTAAAAATAAAAAAAAAGAGAGAGGAAAACTCACCACGGCATTCATTCTTCGTCTTCGTCTTCTTCACGCCGTCTCCTCTCCGTTTCAGCAGCTCAGTGTCGCCGCCGCCTCTCTCCCGTTCACTGATGCCGCCGCCGCCGTCGTCCTTCAGTTCGTGCCACACAGCCTCCCTTCTAGCGGTTTTGCACGGATTTTCTACTCCTTGTTGCTGGTATTCTCCCAATCTCCGTCTGTGTCTTTCTTATCACTTGAAAAACACAAATTACACCTTCTCTAATGAAAGAATGGAGGAGTTGTTTGATTTTTTTTTTAAAATTTTAAATAACAATAGCCGAATAGCAACAAAAAAAAAAAAAAAAAGAACAAAAACAAAAAAAAGAACCGCATTGCGGCTAATTGGGACGTGGATTGTGTTTGGCTGTTCTGATTCGGACGTCATCCAATTCTCTTTTAATTCCTAACTTGATTGATTGACTGAACAATTTGTATATTTGTAGATTATAATTGGGAGAAGACAATGAGTTTTTTTTTTCTTCCGTAATGTATGATCATCCGGAAACCTGAAATTCTTTTAGGGTTCTTTTTTTTTTTTTTTTGCCCTACAGGTCGTTCCTGCTTCTAGAATCTGCTCCGTGTCCCTAAAGATGGTATGTTCCTCTTGAACTTTCTTTTTGGTCCACCTTTGTTTTGAACTCGGTTGCTAAATTTTGCTTGTTGTAACTGATGGGTATATTTATTCCCACAATGCCTTGGTTAAATTGAACTATTTACTTCAAATACGTCGTCGTCACATGTTTGTTTGTTATGTTTTTTTTCTTTTTGGATGAACTCTGATCGAAATTTCCCACTGCAGCTTCCCCTTCGCTCCTAAAGACCGCTCAAGGGCATCCAATGGTAAGGGTCTCATTTCAATATACGTGTAAATATGGGTGAGCTTATAGCACCTCAACTAAGTTCAAGAGAGAGACTTAAATTTGATCGTCAAGAAACTTAAAGATTTTATATCTAGATAGGGGGCCTCAATATGTAATGCATAATAGGTTGCATTCTGCTTAAACCCTTCCTTCGAGTTTGTTTTTTTTTTTTTTTTTTGTAGTATGCCATTTTATTCTTTCATTTATTCAATGAAATTTCGGTTTCTTACCAAAATAATAATAATAATAATAACAACGACGACGACAACAACAACTTTCATGTTAGGAATTTGCTTTTGAACTTATTTCATGAATGTAAAATTCGTTGTTGCAACAGTTGGTGGAACTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTCATCTGCACTTCTAAAGTAATGAACTTTTATTTCAGTGATGAATTTTTCTCTTTTGCATTTGCTTTTACTTTTTCTGAGAGAATGGGTAATAAGTTTTCTATATCAAATGTAGGATGGTGACCGGTTTTGGCGGATGCCTGAATGTTATATCCATGGCAATAAAATCAAGTATTTGCGAGTTCCTGATGAGGTACTCATGAATGCTGTTGCCAATTTTGAATGTCTAACTGTGACTTTGGACGTATCAGAGGACCAAAACCAATTATATATTTGCTTGTAGATAAAAAAAACTCATATACCTTAAAATTTAGTTCTTCCACTTCTGTCACATGCTTGCCAGCCATATCTCATTTTGATTTCTGGTTTCAAATATTATTTCCTCTTTTCTTTTACATATCCTTTTACATCATTGTGATTTTCTTCAACTTGATCCTTATCCACCAAAAAAGTAGTTTATTGAAACTGTTCTTTGCTTTCTGATGATAGAAGTTATCATTTCCCTTAAAAACTTGTCCTAACCAGTCTAGTAAATGCATGCTAAATTTTTGTACAAACAATTGCAATATTGCAAGCTCGACACAAGTGTGCACATGCATGCACACATGAAATGTTCTGTTTCACTAATGTTGTATCATTTCCCAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATTCTGTTTATGCATTTTATAAGATAACGATTATCAATTGAAGTAAAGTGCATTATGCATTTAGGAAATTGTAAAATCAATTTCATTGATTTTTATTACTGAAATCTTTAACAAAATCCATATAATAAACAATGGGCATTTGAAACATACCATACAATACCAAATGCCTTTGTCAATGTTAGTTTGTATTTGACTCTTGATTGTCCCTCCACATCAAATGAGTCTAAATAAATGATGCCATTAAAGACTAATATTAATTTCTCTTTTGCCCTTAGTTTTGAAAAGTTAGAGCTTTAGTATCAAGGAAACTGATTCTTGGAAACTGAATTTTCAGATAGGAAACCTCCGGGTGTAGGGCATGGAAGAGGAAGAGGACGTGAGGATGGTCCTGGTCTTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCTAAAACTACTTCTGGAGGCCGTGGAAAGGGTGGGCCTGGTGGAAAACCCGTTGCCAACAGAGGTAAATTAAACTGAATCATTGTTATTCATGGAACATACGTTTGTTGTTTTGGCTCCTATTGGATAACAATTTTGTTTTTACTTTTTCTGCCATGTAAAAATTGCACATACCTTACCTATCTTTTTTTTTATTTTTCTCTTTAAACAAGAGATGGAACCTTACCCTATGAAGCACGGACACGCTAAAATGGAGGGAGGATCTGTGTCGGACACGGATTCGTCCGGACACGCTCCGGACACGCAATTTTGCGTGTCCTATTTTTTTTTTTAAATTAATTTATTTTCGGACACGCTTGGACACGGCCAGATACGCCTCAGACACGCTTTCTTCAAATTTTCGCTGAAATTGAAGTCCAAGGTGGGCTGCCTGCTTCATTTAAAAAAAAGAAGAAGAAGAAGAAATAGAAGAAGAAATAGAAAACCCACGTTTTCTGGAGCAGACGGCTAGGGTTTGTTTTAATCTTTCAATTTTGCCCTTTAGTTTCACTTCTTCTCCACGAAATCAGCCCTTCTCCACGAAATCAGCTACTCCATTTAGGGTTTGTTGATCGTTTTCTTCTTCTCTACGATTTCAATAGCCGCCGCACACAAACCCTCACACCTTTTTTCTTTTCCTTCCGTTTAATTCTTTTCTTTTTGTTTTTAAACCCCCAATTAAGCTTCCCTAGACAAACCCTCACACAAACAGGCCCAGCCCAATAAAAGAGGTATTTTTAAATTAAAAAGAAAAAAAAGAAGAATGATGAAAAAAAAAATTATATATATACTAAAAAAAATTAAAAATTTATATATATACTAAAAATTAAAAATATATATACTAAAATTTTTAAAAAAATTATATATATATATATATATATACTAAAAAAAATTAAAAAAAAAAAAACGTATCCTCAACGTATCCGTATCCTAGTTTTTTAGAAATTTACGTATCGCCGTGTCCTGTCGTGTCCGTGTCCCGTATCCGTGTCCGTGTCCGTGCTTCTTAGACCTTACCTATATATCCTTGATGTTTCTTGTCAAAAAAAAAAAAAAAAAAAAACAAGAGATGGAACTTTTCATTGAAGTAATGAAAATAGACTAATGGTCAAAAGATACAAAACTCCACATAGGAGTGAAAAGAAGAAAACTACAGACAAAAAACTAACAACAATTATAAAAGAACAATGAAAGCATGCCAATTATCATGTAAAGAGAAATAAACGAAAAGCTTGGGAAGAGAACACCAAGTAGAAGCCTTTTGTGTTTAGTTTTTCACTCTTTGAAAACACTTGGACCTAATTTAAAAACAAAATACAGGAGCTCTGAGAAGTATTACATTTTTTAGTTTTTTAAAATTTGGCTATGATTTCTAAGTCGATTTTAAGAGTAGATTAGGAAACAAAGTTAAAGGTTTGCCTAAACAAAAACACTAGGAACAAAAACATTATCACTTGGACTTTTTATCTTCCTCTATGTTGGCCATTGTTATAGTCTTGCAAATTTACAGAATCAATCAGCATTTCAGATGCTTCTGGATTTACACCCACCAAAGAATTACTAATTGTAACTTCTGCTGAAGGTAGTTGTTAG

mRNA sequence

ATGTACAAGGAGCTGATGAGGACAGCCGGGGAGAAATCAGGCTGGGAGATGGGCCCAAGAGGTGAAACCGACAAGTGGGACGGGCCAAGATCGAAGGAGTCGGGCTTTTGGCCTGACCCCCTGCTCGGCTTCGGCCCATGGCCGAGGCCGAGCCCGTCCGACTCCATTCGATCCCTACCGCCTTTGGGCGCCCCGGTTCCGCCTGCATCAGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTGTCTTGCAGACCACGTCTTCCCCCTCATCTACAAATTTACCGTCGGTGGCACGTGAAGGGGTCGTTTGGTGCGCGGGAATTTGATTGGAATGGAATGGAATGTGATTCCCATGGGAATATTTTTGCTGGAATCATGATTCCCATGCATAGTTTTGTAAAACCGATTGGATCAGTTCAGTTCGCGGTTTGGTCAAAAACCGACAAAACCGAACTGGAGAGAGGAAAACTCACCACGGCATTCATTCTTCGTCTTCGTCTTCTTCACGCCGTCTCCTCTCCGTTTCAGCAGCTCAGTGTCGCCGCCGCCTCTCTCCCGTTCACTGATGCCGCCGCCGCCGTCGTCCTTCAGTTCGTGCCACACAGCCTCCCTTCTAGCGGTTTTGCACGGATTTTCTACTCCTTGTTGCTGGTCGTTCCTGCTTCTAGAATCTGCTCCGTGTCCCTAAAGATGTTGGTGGAACTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTCATCTGCACTTCTAAAGATGGTGACCGGTTTTGGCGGATGCCTGAATGTTATATCCATGGCAATAAAATCAAGTATTTGCGAGTTCCTGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCCGGGTGTAGGGCATGGAAGAGGAAGAGGACGTGAGGATGGTCCTGGTCTTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCTAAAACTACTTCTGGAGGCCGTGGAAAGGGTGGGCCTGGTGGAAAACCCGTTGCCAACAGAGAATCAATCAGCATTTCAGATGCTTCTGGATTTACACCCACCAAAGAATTACTAATTGTAACTTCTGCTGAAGGTAGTTGTTAG

Coding sequence (CDS)

ATGTACAAGGAGCTGATGAGGACAGCCGGGGAGAAATCAGGCTGGGAGATGGGCCCAAGAGGTGAAACCGACAAGTGGGACGGGCCAAGATCGAAGGAGTCGGGCTTTTGGCCTGACCCCCTGCTCGGCTTCGGCCCATGGCCGAGGCCGAGCCCGTCCGACTCCATTCGATCCCTACCGCCTTTGGGCGCCCCGGTTCCGCCTGCATCAGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTGTCTTGCAGACCACGTCTTCCCCCTCATCTACAAATTTACCGTCGGTGGCACGTGAAGGGGTCGTTTGGTGCGCGGGAATTTGATTGGAATGGAATGGAATGTGATTCCCATGGGAATATTTTTGCTGGAATCATGATTCCCATGCATAGTTTTGTAAAACCGATTGGATCAGTTCAGTTCGCGGTTTGGTCAAAAACCGACAAAACCGAACTGGAGAGAGGAAAACTCACCACGGCATTCATTCTTCGTCTTCGTCTTCTTCACGCCGTCTCCTCTCCGTTTCAGCAGCTCAGTGTCGCCGCCGCCTCTCTCCCGTTCACTGATGCCGCCGCCGCCGTCGTCCTTCAGTTCGTGCCACACAGCCTCCCTTCTAGCGGTTTTGCACGGATTTTCTACTCCTTGTTGCTGGTCGTTCCTGCTTCTAGAATCTGCTCCGTGTCCCTAAAGATGTTGGTGGAACTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGGGAAGTCATCTGCACTTCTAAAGATGGTGACCGGTTTTGGCGGATGCCTGAATGTTATATCCATGGCAATAAAATCAAGTATTTGCGAGTTCCTGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCCGGGTGTAGGGCATGGAAGAGGAAGAGGACGTGAGGATGGTCCTGGTCTTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCTAAAACTACTTCTGGAGGCCGTGGAAAGGGTGGGCCTGGTGGAAAACCCGTTGCCAACAGAGAATCAATCAGCATTTCAGATGCTTCTGGATTTACACCCACCAAAGAATTACTAATTGTAACTTCTGCTGAAGGTAGTTGTTAG

Protein sequence

MYKELMRTAGEKSGWEMGPRGETDKWDGPRSKESGFWPDPLLGFGPWPRPSPSDSIRSLPPLGAPVPPASEAVWLAPHRCAGFLSCRPRLPPHLQIYRRWHVKGSFGAREFDWNGMECDSHGNIFAGIMIPMHSFVKPIGSVQFAVWSKTDKTELERGKLTTAFILRLRLLHAVSSPFQQLSVAAASLPFTDAAAAVVLQFVPHSLPSSGFARIFYSLLLVVPASRICSVSLKMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDEVIDKVQEETKSRADRKPPGVGHGRGRGREDGPGLKGMGRGFDDGAKTTSGGRGKGGPGGKPVANRESISISDASGFTPTKELLIVTSAEGSC

Homology

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BLAST of Lag0038233 vs. NCBI nr
Match: XP_038896461.1 (uncharacterized protein LOC120084721 [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 6.3e-61
Identity = 134/186 (72.04%), Postives = 143/186 (76.88%), Query Frame = 0


Query: 190 FTDAAAAVVLQFVPHSLPSSGFARIFYSLLLVVPASRICSVSLK--------------ML 249
           FT++ +A+ L + P  +P    AR+ +    VV AS +C VSLK              ML
Sbjct: 126 FTNSYSALDLSYGP--VP----ARVQFKYTWVVSASSVCFVSLKMLPLSLLKTAQGHPML 185

Query: 250 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDEVI 309
           VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDEVI
Sbjct: 186 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 245

Query: 310 DKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGPGG 359
           DKVQEETKSRADRKPPGVG GRGRGREDGPG    KGMGRGFDD AK  SGGRGKGGPGG
Sbjct: 246 DKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDDSAKAASGGRGKGGPGG 305

[Close]

BLAST of Lag0038233 vs. NCBI nr
Match: XP_022926288.1 (sm-like protein LSM4 isoform X1 [Cucurbita moschata] >XP_022981642.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_022981643.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_023523329.1 sm-like protein LSM4 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7037244.1 hypothetical protein SDJN02_00867 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 7.7e-59
Identity = 117/128 (91.41%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETK+RADRKPPGVG GRGRGREDGPG    KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

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BLAST of Lag0038233 vs. NCBI nr
Match: XP_011659113.1 (sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_016908 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 2.9e-58
Identity = 117/128 (91.41%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPGL---KGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETKSRADRKP GVG GRGRGREDGPG+   KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

[Close]

BLAST of Lag0038233 vs. NCBI nr
Match: XP_008454536.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454538.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454539.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 5.0e-58
Identity = 117/128 (91.41%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETKSRADRKP GVG GRGRGREDGPG    KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

[Close]

BLAST of Lag0038233 vs. NCBI nr
Match: KAA0046492.1 (putative U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo var. makuwa] >TYJ97721.1 putative U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 5.0e-58
Identity = 117/128 (91.41%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETKSRADRKP GVG GRGRGREDGPG    KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

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BLAST of Lag0038233 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.8e-49
Identity = 99/122 (81.15%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEET-KSRADRKPPGVGHGRGRGR-EDGPGLKGMGRGFDDGAKTTSGGRGKGGPG 353
           VIDKVQEET KSR+DR+PPGVG GRGRG     PG +G+GRG DDG     GGRG+GG G
Sbjct: 75  VIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQDDGGSKGGGGRGRGGIG 134

[Close]

BLAST of Lag0038233 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.4e-47
Identity = 97/124 (78.23%), Postives = 100/124 (80.65%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY+ GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGRED----GPGLKGMGRGFDDGAKTTSGGRGKGG 353
           VIDKVQEE KSR DRKPPGVG  R RG  D    G   KG+GRG DDG    + GRGKGG
Sbjct: 75  VIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMDDGG---AKGRGKGG 134

[Close]

BLAST of Lag0038233 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-45
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CYI GN IKYLRVPDE
Sbjct: 15  MLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRG-FDDGAKTTSGGRGKGG 353
           VIDKVQEETKSRADRKPPGVG GRGRGRE+G G   ++G GR      AK     RG+G 
Sbjct: 75  VIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMMQVAKAWVEVRGRGA 134

[Close]

BLAST of Lag0038233 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-44
Identity = 92/115 (80.00%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPGLKGMGRGFDDGAKTTSGGRGKG 349
           VIDKVQEE K+R DRKPPGVG GRGRG +DG G +G GRG   G    + G G+G
Sbjct: 75  VIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG-GARGRGRGTSMGKMGGNRGAGRG 127

[Close]

BLAST of Lag0038233 vs. ExPASy Swiss-Prot
Match: Q3ZBK6 (U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=9913 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.8e-32
Identity = 76/125 (60.80%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYI G+ IKYLR+PDE
Sbjct: 15  MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRG------REDGPGLKGMGRGFDDGAKTTSGGRGK 352
           +ID V+EE           V  GRGRG      ++ G G+ G GRG         GGRG+
Sbjct: 75  IIDMVKEEV----------VAKGRGRGGLQQQKQQKGRGMGGAGRG-------VFGGRGR 122

[Close]

BLAST of Lag0038233 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-60
Identity = 125/155 (80.65%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 221 VVPASRICSVSLK--------------MLVELKNGETYNGHLVNCDTWMNIHLREVICTS 280
           VV AS +C +SLK              MLVELKNGETYNGHLVNCDTWMNIHLREVICTS
Sbjct: 83  VVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS 142

Query: 281 KDGDRFWRMPECYIHGNKIKYLRVPDEVIDKVQEETKSRADRKPPGVGHGRGRGREDGPG 340
           KDGDRFWRMPECYI GN IKYLRVPDEVIDKVQEETKSRADRKP GVG GRGRGREDGPG
Sbjct: 143 KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG 202

Query: 341 L---KGMGRGFDDGAKTTSGGRGKGGPGGKPVANR 359
           +   KGMGRGFDDGAK  SGGRGKGGPGGKP ANR
Sbjct: 203 VRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANR 237

[Close]

BLAST of Lag0038233 vs. ExPASy TrEMBL
Match: A0A6J1J2N4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111480701 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-59
Identity = 117/128 (91.41%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETK+RADRKPPGVG GRGRGREDGPG    KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

[Close]

BLAST of Lag0038233 vs. ExPASy TrEMBL
Match: A0A6J1EHL8 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita moschata OX=3662 GN=LOC111433469 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-59
Identity = 117/128 (91.41%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETK+RADRKPPGVG GRGRGREDGPG    KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

[Close]

BLAST of Lag0038233 vs. ExPASy TrEMBL
Match: A0A0A0K9I4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 117/128 (91.41%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPGL---KGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETKSRADRKP GVG GRGRGREDGPG+   KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

[Close]

BLAST of Lag0038233 vs. ExPASy TrEMBL
Match: A0A1S3BYD6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.4e-58
Identity = 117/128 (91.41%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPG---LKGMGRGFDDGAKTTSGGRGKGGP 353
           VIDKVQEETKSRADRKP GVG GRGRGREDGPG    KGMGRGFDDGAK  SGGRGKGGP
Sbjct: 75  VIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGP 134

Query: 354 GGKPVANR 359
           GGKP ANR
Sbjct: 135 GGKPGANR 142

[Close]

BLAST of Lag0038233 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-45
Identity = 92/115 (80.00%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 234 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDE 293
           MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI GN IKYLRVPDE
Sbjct: 15  MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74

Query: 294 VIDKVQEETKSRADRKPPGVGHGRGRGREDGPGLKGMGRGFDDGAKTTSGGRGKG 349
           VIDKVQEE K+R DRKPPGVG GRGRG +DG G +G GRG   G    + G G+G
Sbjct: 75  VIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG-GARGRGRGTSMGKMGGNRGAGRG 127

[Close]

BLAST of Lag0038233 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 236 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDEVI 295
           VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I G+K++++ +PD + 
Sbjct: 22  VELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDILK 81

Query: 296 D-KVQEETKSRADRKPPGVGHGRGRGREDGPGLKGMGRGFDDGAKTTSGGRGKGGP 351
              + +   +R   K   +G GRGRG   G    G GRG        +GGRG   P
Sbjct: 82  HAPMFKRLDARIKGKSSSLGVGRGRGAMRGKPAAGPGRG--------TGGRGAVPP 128

[Close]

BLAST of Lag0038233 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 236 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIHGNKIKYLRVPDEVI 295
           VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I G+ +++L +PD ++
Sbjct: 22  VEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSLVRFLVIPD-ML 81

Query: 296 DKVQEETKSRADRKPPGVGHGRGRGREDGPGLKGMGRGFDDGAKTTSGGRGKGGP 351
                    R   K   +G GRGRG       KG GRG       T GGRG   P
Sbjct: 82  KNAPMFKDVRGKGKSASLGVGRGRGA--AMRAKGTGRG-------TGGGRGAVPP 125

The following BLAST results are available for this feature:

BLAST of Lag0038233 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896461.1	6.3e-61	72.04	uncharacterized protein LOC120084721 [Benincasa hispida]	[more]
XP_022926288.1	7.7e-59	91.41	sm-like protein LSM4 isoform X1 [Cucurbita moschata] >XP_022981642.1 sm-like pro...	[more]
XP_011659113.1	2.9e-58	91.41	sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_0169...	[more]
XP_008454536.1	5.0e-58	91.41	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_...	[more]
KAA0046492.1	5.0e-58	91.41	putative U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo var. makuwa] >TY...	[more]

BLAST of Lag0038233 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LGE6	9.8e-49	81.15	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
Q43582	5.4e-47	78.23	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P...	[more]
Q9ZRU9	1.7e-45	77.42	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN...	[more]
F4K4E3	1.5e-44	80.00	Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1	[more]
Q3ZBK6	3.8e-32	60.80	U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=9913 GN=LSM4 PE=2 SV=1	[more]

BLAST of Lag0038233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q6	2.6e-60	80.65	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A6J1J2N4	3.7e-59	91.41	U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1EHL8	3.7e-59	91.41	U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0K9I4	1.4e-58	91.41	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A1S3BYD6	2.4e-58	91.41	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929...	[more]

BLAST of Lag0038233 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27720.1	1.0e-45	80.00	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	1.5e-07	32.76	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	2.1e-06	33.04	snRNP core protein SMD3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 226..290 e-value: 1.9E-11 score: 54.1
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 233..289 e-value: 4.1E-12 score: 45.6
None	No IPR available	GENE3D	2.30.30.100		coord: 229..302 e-value: 6.1E-29 score: 101.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..329
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 233..353
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 233..353
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 234..296 e-value: 2.45065E-47 score: 153.886
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 233..331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038233.1	Lag0038233.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0033962	P-body assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0017070	U6 snRNA binding