Lag0038221 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038221
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGPI-anchored protein LLG1-like
Locationchr2: 13960065 .. 13962797 (+)
RNA-Seq ExpressionLag0038221
SyntenyLag0038221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGGAAAAAAGAATAATAGGAAAAAAAAAGGAAGTCACCGGCGGCGACCGACCGTCGGCGACAGCCGCCGCCGGCAGGTGTGCTAGTGGTGGGTTAAAGAACAAGAGGAAGGTTGAAAGAAGAAAGAGGAAGGTTGAAGAAGAAGAAATAAAATTAAAAAAAAACAATATTAATTTATTTTTTAATAAAAAAATAGTGCCACGTTAGCAAACCGTTAGTTTTTAACAGAAAATTGGATGGAGGGACCAAAATGCTACTAAATACAAACCTGATGGACTAAAATGTTGAGTTCGAAACCTCAGGGACCAAAACGAAACCTAAACCAAACCTCAGGGACCAAAAGTGTATTTTACCTATCTTTGAATTATGCTTTGGTGATCCCTCTTTTTTTTTGAAACAATGCTTTGGTGATCCCTCTTCTACTAACTTAGTATTAAAAAAAATTGTATTAAAAAAATTAGGCATTGGAATTCCTGGTTCATATGAAGCCCATTTGTTCAGCAATTATGAAAATCAAGACCATTTCCTCCAGCAAAATACCAATTTATACTATATATTAAAATCGATCTCCGTTTAAATACCAAAGTACAGAACTAGAGAAGCTTTCAATTGGTTGTAACCACTGACATCTGGTTTGATAATAATTTTGTTTCTGATTCTCTGTTTGTTAAATTACATTTCTTTACCGTAGATTTTACTTTGTTCGAAGAAAAACTTGAATCCTTATGAAAATTTCCATTTTTTTTTTCTTTCTTTCTCCTTCAAAAGTTGACTTGGATTTTGAAAATAGTTTTAAAAAGTAGGGGAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAGGTTTCATTTTGCTCCCTCAGTTTTCAAACTCGACATTTTAATCCTTGAGTTTGGATTTTGTTTCATTTTAGTCCATCCGTCCATTTTTCTTTAGAAATTAACGGAATGCTGGTGTGACACCTATTTTTATTTAAAAATATATATTTTAATTTTAAAATAAAAATAATATTAAATTAATAAAAATTATTATTTTATTACTTTTTTTTTTTTTTACTTCTTCATCTCTCTTCCTCCCCTCCTTCTTTCTTTTTCTTCCTCTTCTTTTTTTCCTCTAGTCTGGCGGGACCGCCAGCCGCCGCCGCCGACAGCCGGTTGCCACCATCATTTTTTTTGTTGTCTTTTCTTCTCTTTCTTTCTTCTTCTTTTCCTTCTCCTTATTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTTTTTTTGTTAAAATCCAAACAGAGGACGGAGAACCCTCCTCCCTCCTTTGTTCCTTTTTTTTAAAAAGAAAAACTAGTGAAAGAAAGGGAAGTGAGGAAGAGGGAAGAAGAAGAAAAAGGGGAGAAAAGAGGGAAGAAGAAGAAAAAAAAAGGAGAAAAAAGAGGAAAAAAGGGAATGGCGGTGGCGGCGACCGACAACTAGAGGTAGTGGTGGCTGCCAAGTGAATTGACATTAGGTTTTGAGAGTGGTGGAGAATAAGATCAAGGAAGAAGATGGAAGAGGAAAAAGAAAAGAAAAAATAAAAAAAGAAAAAAAAATAATAAAAAAGTATTTAATATATTATTTTATTTTACAAATAAAAAATATATTTTTTAAATAAAAAAAACTAATGTCATATTAGCAATTTGTTAGTGTTTAATAGAAAGATTTATTGAGGGACCAAGGGTGTAACAAAATCCAAATCTCAGGGACTAAAATGTCGGGTTTGAAAACTACCAAAATGAAACCTAACCCAAACCTTCGGGACCAAAAATGTATTTTTCCCTAAAAAAAAATCAAATGGTTAGTAAATGATTTTTTTAGTTTTCAATCACCACGTCACCCGTCAAAGTTTTAGTGTATGTTTGAAATGAGTCTTTAAGTGTTTAATTTTTTTTCTTTTACATTTAAAAATACTTTTTTAAACACTTAGAAAGTCATGTCAAATGGATCCTTAATTTTCTTAACGAACCTTCTATTAATATGCTTTATAGCAATATACTTATAATTATAATTGAAGAAATAATAGGCAGAAATAAAACCTTCACATTGACAAAGTGAACATAGCTTAGTAGTAATTGACATGTAATCTCGATCAAGAGGTTAGAGGTTTGAATCCACGTCCCAAATGTTGTTCACCTAAAGAAAATAAATAAATAAACCTTCCCACTTTCTTTCAAAAAAAAAAGAAAAAAAAAAGTAGACTGCTATTATCAACGAAATGACAGATTGTAGCAGCAAAAATGTAGCAAAGAAGAGAAACTGTTTATAAAAAAAGTGCTTTCTTTTATTTTTAAAGATCCCTCTTCCTTCATTTTGATCATTCCCACCATGTCATGTGTTTCATAACAAATTTGTGCAGCTTGCCCTGTGAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCTATATTCTCCAAAGCTATGTTGTTCAGCTCTTACAGAATTCTCTTGCCCTTATGCTGATGCTGTGAATGATATGACAACTAATTGTGCTTCAACCATGTTTAGCTACATTAACCTCCATGGAAAGTACCCGCCTGGCCTTTTCTCGAACGTGTGTCGAGAAGGAGATCGAGGTCTTGCCTGCCCTCTATTGCCAGATCCATCTGATCCAAGCTCGACTCCGCTCTCGAAACGTCCATCTCTCGCAATCATCATTGGTTCTGGACTTGTACTTCTCTTGTTATACCTTTTGTGA

mRNA sequence

ATGGAGGCGGAAAAAAGAATAATAGGAAAAAAAAAGGAAGTCACCGGCGGCGACCGACCGTCGGCGACAGCCGCCGCCGGCAGGTGTGCTAGTGCTTGCCCTGTGAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCTATATTCTCCAAAGCTATGTTGTTCAGCTCTTACAGAATTCTCTTGCCCTTATGCTGATGCTGTGAATGATATGACAACTAATTGTGCTTCAACCATGTTTAGCTACATTAACCTCCATGGAAAGTACCCGCCTGGCCTTTTCTCGAACGTGTGTCGAGAAGGAGATCGAGGTCTTGCCTGCCCTCTATTGCCAGATCCATCTGATCCAAGCTCGACTCCGCTCTCGAAACGTCCATCTCTCGCAATCATCATTGGTTCTGGACTTGTACTTCTCTTGTTATACCTTTTGTGA

Coding sequence (CDS)

ATGGAGGCGGAAAAAAGAATAATAGGAAAAAAAAAGGAAGTCACCGGCGGCGACCGACCGTCGGCGACAGCCGCCGCCGGCAGGTGTGCTAGTGCTTGCCCTGTGAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCTATATTCTCCAAAGCTATGTTGTTCAGCTCTTACAGAATTCTCTTGCCCTTATGCTGATGCTGTGAATGATATGACAACTAATTGTGCTTCAACCATGTTTAGCTACATTAACCTCCATGGAAAGTACCCGCCTGGCCTTTTCTCGAACGTGTGTCGAGAAGGAGATCGAGGTCTTGCCTGCCCTCTATTGCCAGATCCATCTGATCCAAGCTCGACTCCGCTCTCGAAACGTCCATCTCTCGCAATCATCATTGGTTCTGGACTTGTACTTCTCTTGTTATACCTTTTGTGA

Protein sequence

MEAEKRIIGKKKEVTGGDRPSATAAAGRCASACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINLHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLLLLYLL
Homology
[Close]
BLAST of Lag0038221 vs. NCBI nr
Match: XP_023525702.1 (GPI-anchored protein LLG1-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 5.1e-51
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0 

Query: 31  SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYIN 90
           SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYIN
Sbjct: 26  SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYIN 85

Query: 91  LHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
           LHGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 86  LHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 139

[Close]
BLAST of Lag0038221 vs. NCBI nr
Match: XP_023525699.1 (GPI-anchored protein LLG1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0 

Query: 32  ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINL 91
           ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYINL
Sbjct: 52  ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYINL 111

Query: 92  HGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
           HGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 112 HGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 164

[Close]
BLAST of Lag0038221 vs. NCBI nr
Match: XP_023525701.1 (GPI-anchored protein LLG1-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0 

Query: 32  ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINL 91
           ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYINL
Sbjct: 46  ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYINL 105

Query: 92  HGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
           HGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 106 HGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 158

[Close]
BLAST of Lag0038221 vs. NCBI nr
Match: XP_023525700.1 (GPI-anchored protein LLG1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 0 

Query: 32  ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINL 91
           ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTE SCPY D +NDMTT CASTMFSYINL
Sbjct: 48  ACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTELSCPYVDVMNDMTTLCASTMFSYINL 107

Query: 92  HGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
           HGKYPPGLFS++CREGD+GLACP LP PS P+STPLSKRPS AII+ SGLVLL
Sbjct: 108 HGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAIIVASGLVLL 160

[Close]
BLAST of Lag0038221 vs. NCBI nr
Match: KAG7037291.1 (GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 0 

Query: 31  SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYIN 90
           SACPVSFEFLNYTIITSKCKGPLYSP+LCCSALTE SCPY D +NDMTT CASTMFSYIN
Sbjct: 28  SACPVSFEFLNYTIITSKCKGPLYSPELCCSALTELSCPYVDVMNDMTTVCASTMFSYIN 87

Query: 91  LHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLAIIIGSGLVLL 145
           LHGKYPPGLFS++CREGD+GLACP LP PS P+STPLSK  S AII+ SGLVLL
Sbjct: 88  LHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKCRSPAIIVASGLVLL 141

[Close]
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match: Q9FKT1 (GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-32
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 0 

Query: 33  CPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYINLH 92
           CPV+FEF+NYTIITSKCKGP Y PK CC A  +F+CPY D +ND++++CA+TMFSYINL+
Sbjct: 49  CPVNFEFMNYTIITSKCKGPKYPPKECCGAFKDFACPYTDQLNDLSSDCATTMFSYINLY 108

Query: 93  GKYPPGLFSNVCREGDRGLACP----LLPDPSDPSSTPLSKRPSLAIIIGSGLVLLL 146
           GKYPPGLF+N C+EG  GL CP    L P+ S   +   +    L + + + L++ +
Sbjct: 109 GKYPPGLFANQCKEGKEGLECPAGSQLPPETSAEVNAATTSSSRLWLTVSAALLVFV 165

[Close]
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match: Q9M0I0 (GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-29
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 20  PSATAAAGRCASACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTT 79
           PS + A  +  + C   F   NYTIITSKCKGP Y  K+CCSA  +F+CP+A+ +ND  T
Sbjct: 35  PSTSRALLQAKATCKEDFAAKNYTIITSKCKGPNYPAKVCCSAFKDFACPFAEVLNDEKT 94

Query: 80  NCASTMFSYINLHGKYPPGLFSNVCREGDRGLAC-PLLPDPSDPSSTPLSKRPSLAIII 138
           +CASTMFSYINL+G+YPPG+F+N+C+EG  GL C  + P  S  +S PL     L I +
Sbjct: 95  DCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTPTSSSHASIPLVSTHVLLITV 153

[Close]
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match: Q6NLF4 (GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 56/120 (46.67%), Postives = 81/120 (67.50%), Query Frame = 0 

Query: 31  SACPVSFEFLNYTIITSKCKGPLYSPKLCCSALTEFSCPYADAVNDMTTNCASTMFSYIN 90
           + C   F   NYTIITS+CKGP Y   +CCSA  +F+CP+A+ +ND   +CASTMFSYIN
Sbjct: 42  TTCKEDFANKNYTIITSRCKGPNYPANVCCSAFKDFACPFAEVLNDEKNDCASTMFSYIN 101

Query: 91  LHGKYPPGLFSNVCREGDRGLACPLLPDPSDPSSTPLSKRPSLA--IIIGSGLVLLLLYL 149
           L+G+YPPG+F+N+C+EG  GL C  +   +  +S  + +  + A   ++ + LVL LL+L
Sbjct: 102 LYGRYPPGIFANMCKEGKEGLDCTDVTQSASATSDSIPRASTTASLAVLSTFLVLCLLFL 161

[Close]
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match: B3GS44 (GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 59/148 (39.86%), Postives = 88/148 (59.46%), Query Frame = 0 

Query: 8   IGKKKEVTGGDRPSATAAAGR----CASACPVSFEFLNYTIITSKCKGPLYSPKLCCSAL 67
           +     ++ G   S T+ +GR        C V+FE+++Y ++T +CKGP +  K CCSA 
Sbjct: 17  LSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCKGPAFPAKECCSAF 76

Query: 68  TEFSCPYADAVNDMTTNCASTMFSYINLHGKYPPGLFSNVCREGDRGLACPLLPDPSD-- 127
            EF+CPY   +NDM ++CA TMFSY+N++G YP GLF+N CRE   GL CPL P  S   
Sbjct: 77  KEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVCPLPPLYSHNL 136

Query: 128 PSSTPLSKRPSLAIIIGSGLVLLLLYLL 150
            +ST  S    ++++I +   +  L +L
Sbjct: 137 NASTADSTPRFISLLISAATAVFALLVL 164

The following BLAST results are available for this feature:
BLAST of Lag0038221 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525702.15.1e-5186.84GPI-anchored protein LLG1-like isoform X4 [Cucurbita pepo subsp. pepo][more]
XP_023525699.11.5e-5086.73GPI-anchored protein LLG1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023525701.11.5e-5086.73GPI-anchored protein LLG1-like isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_023525700.11.5e-5086.73GPI-anchored protein LLG1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
KAG7037291.11.4e-4884.21GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lag0038221 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FKT13.2e-3252.99GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1[more]
Q9M0I03.4e-2951.26GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1[more]
Q6NLF41.6e-2646.67GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1[more]
B3GS441.7e-2539.86GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR31533:SF2GPI-ANCHORED PROTEIN LLG1-RELATEDcoord: 30..144
IPR039307GPI-anchored protein LORELEI-likePANTHERPTHR31533GPI-ANCHORED PROTEIN LLG1-RELATED-RELATEDcoord: 30..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038221.1Lag0038221.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane